RNA id: XM_034303172.1


Basic Information

Item Value
RNA id XM_034303172.1
length 3675
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC113545189
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16875201 ~ 16892743 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaCTGATGCTAGCATATGCGCGCtcgtctctctgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagatctcgCCACGTGACACATCTCGCCAATGTCCTTCTGCAAAGCCACTCAGCATCATGGCTGCGGATGCTGCGGATGCTCTCCTCCCGCTCTGCATCCCGGCATCATGGCAGCTGCCGCTGCTGCTTCTCCTCGTCTCGCATCTTCCGGGTCACACCTTCGGCCTGTTAGGCTTCCGTCCAGAGGACACGGGTCCGGCGCTGTCTGTGCAAAATGGGCTGCTGAGGGCGACCGAGGGAACGCGCTTCGTGTTGCGGGTGTACTACGCAGCGTCGCCGCAGAGGATGAACCGAAACGCGAGCTCCAGAGCGGACGCTGCCACTGCGCCTTGGATCGCTTTTGTCGAGGAGCCGCAGCCGGGCCGAGAGGGTCAAGCTCACCCGAAGAGGAACTTATGTGTGGAAGAGAGCGCGCGAACTTCTGACATAGAGCTGCTGGGCTCGTTCAAGTCGGCCTCCAGCCAGAATTCCATCCTCGTGGAGCTGCTGGCCAAAGACCTGCGGCGAGGTGAGAAAGTCAAATATTACTCCATGTGCGCCTTTGACGGGGCCAAGTGGGAGCACTTCAGGTCGAGGGACTTCTGGCTCGCGGTGGTCGAGCGGCCACCACACACAGACGGATGGCTACAGGCGAGTCTTTCTGTGCTGCTGCTGGCGCTGTCTGCGCTCTTCAGCGGACTGGTTATAAGCATGCTCGCCCTCGACCCCGTGGAGCTGAAAGTGCTCCAGAACAGTGGCACGGAGAAGGAGCAGAAGTACGCGGGCAAGATCGAGTCCGTGCGCAAGCACGGAAACTACGTGCTCTGCACGTTGGTGTTGTGCAACGTGCTCACCAATACATTTTTGGTTGTTTGGATGTGCCAGATTCTCGGAGTCACGCCTCTGTCCACCGCCGCCTGcacttttctgatctttttcGTTGGGGAGATTCTACCGCATTCCGTCGCATCCAGACACGGGCTGGCCATAGCATCTAAAACCATCTGGCTCACCCGGCTGCTGATGCTGCTCACTTTTCCCATCACCTACCCGATTAGCAAACTATTGGATAACATGTTGCATCAAGAAATAAGTAACTTTTACACTCGTGAAAAGTTACTGGCGATGCTGCGCGTCACAGATCCCTATCATGACCTGGTGAAAGAGGAGCTCAACATCATCCAGGGAGCGCTGGAGCTTAGGACCAAAACGGTCGAGGATGTTCTGACCCCGCTCAATGACTGCTTCATGCTGGCTTCTGACGCCATCCTGGATTTCTACACGATGTCTGACATCATGCAGAGCGGTTATACTCGCATCCCTGTTTTTGAGAACGAGAGGTCTAACATTGTTGACATTCTGTTTGTTAAAGATCTGGCCTTTGTTGATCCAGATGACTGTACCCCACTTAAAACCGTCACACAGTTCTACAAACATCCTTTGCATTGTGTATTCAATGATACCAAGCTTGATGCAGTGCTAGAGCAGTTCAAGAAAGGGAAGAGCCACTTAGCCATAGTGCAGCGAGTCAACAATGAGGGAGAAGGGGACCCTTTCTATGAGGTTATGGGAATTGTCACCTTGGAAGATGTTATTGAAGAGATTATCAAGTCAGAAATCGTGGATGAGACGGACTTGTACACTGATAACCGCACTAAAAGGCGAGTGTCACACCACGAGAGGAAACAGCAAGATTTCTCCATTTTCAAACTGTCTGAGAGTGAGATGAAGGTGAAGGTCTCCCCTCAGCTGCTGCTGGCTACACATCGCTTCCTGGCTACAGAAGTGGAGCCTTTCAAGTCTACTTACATCTCAGAGAAGATCCTGCTGCGCCTCATTAAACATCCAAGTGTAGTACAGGAGCTGAAGTTtgatgagaagaaaaagaaatcaccAAAGCACTACCTCTACCAGCGTAACAAACCTGTGGATTACTTTGTGCTGATTTTGCAGGGTCGAGTGGAGGTAGAGATCGGAAAAGAAGCACTGAAGTTTGAAAATGGTCCTTTCACTTATTATGGCATGCCTGCCATCATGGCTGTACTACCCTCAGTTCACAGGTCACCATCACGGAGCAGTGGACTAAATCATTCAGACACCACCATCCATGCGGGGAGTCTGAGCCAGCTGAGCATAGGTGGAGGAGCTTACCTACCAGACTACTCTGTTCGCCAGCTCACCGACCTGCAGATCATCAAGGTAACTCGTAACCACTACCAGAATGCTCTAACAGCCACGCGGATGGACAGCTCTCCTCAGACCCCTGATGCAGACATGCAGGCCGGAGGAGAGAGGACCACAATTCCAGAAACACGCTCCAACAGCATTGCGCTGCCCCTTCCCCGATCACACCACCATACACAACACTTCAAACACCCCCACAGCACCTCCATGCTTAACGAGAAGAACCGCATCGTCCGGAGTAAATCAGATGGACAGAAAAGCCCCAGTGACTCTGTGTTCTTGCGGATGGATGAGATCCCGTACATGCGGACCGAATGTCTAGAGGAAAAAGGAGGAACTGATACTGTGGTTGTACCAAAAGAAACAGGCCTGTCCTCATCTCAGCTGATCAGCTCTCACTCTCTGAATGGATCAGAGGATAACCTGGGCAAGAAGCTGCTGCGCAAACTAAGTAACAAGAAACGGAAAAAGTCACGTGATGGAGAGAAGCCAGTAGAGGACATTTGTGAACTGTCTCAGGCATCAGTATCCTACTCTATAGCTAATGAGAACTGAGAGGCATGTCTGCATGAGGCGCACACACCCAGGAGATCCGCAGTGCCTCTGAGCTGCTAGGAATCGATGATGGCATTCAACCCGATTCCATCAGTTTACAGCACAGAGAAACAATGACTCAGGCTGGCAACAACAACACGTCCTTGATATCCCTCGAATAGCTATTTATAGTAATGATAAGCAATAACAAAGCTGTATGATGAATAACCCCCTTTTTCTACTGACTTATTGGAGTCTAGTGTTTTTTGAAAAGGCGCCTGTCAGCGGTGCTGCTGCTCTCAGGTCATGTTCTGTTGTGCAATACAGTAAGCTGACTCTGCTTTACTGAGAGCACATGAGAcaggagagatggagaaagcGCTCTTGGACCCATTGCTGCATTGCAGGCATAGGAACATGTGACACCTGCTGACGTCTGGGCCCAACCCCCCTCCACACgtacacacccacactctctcacacacaaacacgtgcacacacacaatccagtGGCTTCGGGGAATTGCAGTAGCACTGACTAACCTAGCTAGCATCAGCTGGCGGAGCACAAGATACACTGCATCCCTCCCTCaggctctctctcactctaatTCTGATGATGCATACATTAATGCCTTATAGCCCGTCAGTATTGCTAAAGGCAATGGGAAAAATATTTCTGTGAAGCCATCTCTCCCATGCACTCTCAGTAAAGATTGTAAGCAATGGCTGAAGAATATATAAAGTTGATATAAGAATATAgtgtttataaagaaatgttCAGAATGAGTATATAAGAAATACAAAGATTTACAAATATAGTATATGAGAACTATATAAGATGATATTGTGGTACAATGAAAATGacaacttttttaaataaataaatttgacttgCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56451 lncRNA downstream 86472 16788519 ~ 16788729 (-) True G47735
TU56444 lncRNA downstream 107691 16765709 ~ 16767510 (-) True G47731
TU56286 lncRNA downstream 183602 16676050 ~ 16691599 (-) True G47599
TU56130 lncRNA downstream 428897 16444696 ~ 16446304 (-) False zdhhc16a
TU55985 lncRNA downstream 602670 16271270 ~ 16272531 (-) True G47359
TU56621 lncRNA upstream 116105 17008840 ~ 17009049 (-) True G47882
TU56682 lncRNA upstream 197647 17090382 ~ 17090583 (-) True G47940
XR_004577905.1 lncRNA upstream 224219 17116954 ~ 17129613 (-) True LOC117596916
XR_003404617.2 lncRNA upstream 478707 17371442 ~ 17419407 (-) True LOC113545496
TU56927 lncRNA upstream 607898 17500633 ~ 17503860 (-) True G48158
XM_026933324.2 mRNA downstream 22317 16848352 ~ 16852884 (-) True nkx2.3
XM_026942495.2 mRNA downstream 32057 16841588 ~ 16843144 (-) True nkx3.3
XM_026944497.1 mRNA downstream 75569 16789679 ~ 16799632 (-) True pyroxd2
XM_026942127.2 mRNA downstream 89013 16767582 ~ 16786188 (-) True zgc:123010
XM_026932552.2 mRNA downstream 115915 16738724 ~ 16759286 (-) True loxl4
XM_026942679.2 mRNA upstream 75586 16968321 ~ 16972471 (-) False st3gal7
XM_026942688.2 mRNA upstream 75586 16968321 ~ 16972433 (-) True st3gal7
XM_026933946.2 mRNA upstream 86396 16979131 ~ 16982729 (-) True morn4
XM_026933955.2 mRNA upstream 86396 16979131 ~ 16982012 (-) False morn4
XM_034303043.1 mRNA upstream 239397 17132132 ~ 17276658 (-) False pcdh15a
TU55523 other downstream 1458718 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2090467 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 2682958 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 3844005 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 4140919 12734200 ~ 12734282 (-) True trnal-cag
XR_004577773.1 other upstream 86396 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 86396 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 86396 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 578452 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 669597 17562332 ~ 17574422 (-) False LOC113538666

Expression Profile