RNA id: XM_026944588.2


Basic Information

Item Value
RNA id XM_026944588.2
length 3186
RNA type mRNA
GC content 0.52
exon number 17
gene id dclk2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4545139 ~ 4609450 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgtgtgtgtgcatgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgggatGAGGTTGGAATAACGGAGCAGCTGCTCGGACTTTTGATGTGGAGGTTTTCATTCCTGATCACCAGCTTCACGACTGGATGGATGCTTTTCAGTGGGATTCCCATCTTCCAGTCATATTAAACAGGTTTTGTGAACTATTTGGGAATTTTGGGAATTTGGTGCCAATCCTAGGAGTTGATTTTGGATTCTTTTAAAcggatttgatttttttttgttattggattttctttttatataataataacttgCATTAGGAGCATTTTGGTGGTCGGATGAACTTGTAGCCAAGTTCATATTAGGGATTTTTTTGGCATCAGAAATTCATTCTTTCTGAATTGATGAGTTTTATGAGGCGGTTCGGCGACGCGAAACCGGGCCGCTTCATCCAGCCGAGACGCACCGGCGACGCGTAGAGCCACACGTTCACACGTCCACATCCCTGCACCATGTCTTTAAGCAGAAGCATCGAGTGGGAGCACTTTGAGGAGAGGGAGAAGGCACCACGTTCGGGTCGCGGAAGCGCAGCCAGCTCTCGCGGCGCGTCCCGGGGAAACGGGAACGGCTACGGCTCGGTGGCGAGTCCCGCGCACAGCGCGCACTGCAGCTTCTACCGGGCGCGCACCCTGCGCTCCCTCACTGCCGAGAAGAAGGCGCGGAAAGTGCGCTTCTACCGCAACGGAGACCGCCACTTCGAGGGCTTGGCGTACGCCGTGTCCGGTGACCGCTTCCGCTCGCTGGACGCGCTGCTCGTGGAGCTCACGCGCTCTCTGTCGGACGGCGCGAGCTTACCGCAGGGAGTGCGCTGCATTTATACTATAGACGGTGCGAGGAAGATCACCAGTCTGGATGAGCTTGTAGaagGCGAAAGCTACGTCTGCGCCTCTAACGAACCCTTCCGCAAAGTGGACTACACCAAGAACGTGAACCCTAACTGGTCAGTGAACATTAGGGCAGGCACATCgcgctctctctcctctttacCCATACTAAAGAACGAGCTGAGGGAGCGAGAAAACAAGGATTTCATCCGGCCCAAGCTGGTGACGGTGATCCGGAGCGGCGTGAAGCCACGCAAGGCCGTGCGCATCCTCCTGAACAAGAAGACGGCACACTCGTTCGAGCAAGTGCTCACGGACATCAGTGATGCCATCAAGCTGGACTCGGGAGTGGTGAAGAGACTCTACACGCTGGAGGGGAAGCAGGTCACGTGTCTGCAGGACTTTTTTGGCGATCACGACGTGTTTATTGCGTGTGGTCCGGAGAAGTACCGCTATGCTCAGGATGATTTTGTGTTGGATCACAGTGagtgccGTGTGCTGAAATCTTCCAGTACTTCTCGCTCCACTACTCCCGTGAGGTCCAGTGGCAGTAAGAGTCCAGCACGGCGCAGCAAATCTCCGGGATCAGTGAGGAAGACGTCTCCGTACTTGTCCGCCAGCGGACAGTCTCCAGTCAAATCCCCCGtTAATGGAGTGGTTCCCAGCCTGAGTCAGATTTCCACCCCCAAATCCACCAAGTCCTCCAGCTCGTCCCCCACGAGTCCCCGCAGCATGCGCAACTTCAAGATTCCGACTCATCACTCGTCTGCGTCGAATGTGAGCATCTCCTCCGAGCAGCATCAGCCTCATCACACTGACAACACCAGCCCCGAGGTTAATGGAAACAGAAATCCTACAGCCTCTGCCATCGTGGAGAAGTACAAAGTGGGAAAAGTTATCGGTGATGGGAATTTTGCGGTGGTGAAGGAATGTGTTGAACGGTCGACTGGAAAGGAGTTCGCCTTAAAGATCATTGATAAGAATAAATGTCGTGGCAAAGAGCACCTGATTGAGAGCGAGGTGGCTGTACTAAGGCGGGTCAAACACCCCAACATCATAATGCTGATGGAGGAAGTGGACACGCCCTCTGAGCTCTATCTCGTCATGGAGCTAGTCAAGGGTGGAGATCTGTTTGACGCCATCACGTCCTCTACGAAGTACACAGAGAAAGACGCCAGTGCCATGGTGTACAACCTGGCTGCTGCTCTCCAATACCTGCACAAGATGAACATCGTCCACCGAGACATCAAACCCGAAAATCTACTggtgTGTGAATATCCGAACGGCACCAAATCTCTGAAGCTGGGGGACTTTGGGTTGGCGACGGTGGTGGAAGGCCCGCTGTACACCGTGTGTGGGACTCCAACTTACGTCGCGCCGGAGATTATAGCAGAGTCGGGTTACGGTATAAAGGTGGACATCTGGGCAGCAGGTGTGATTACCTACATCCTGCTGTGTGGCTTCCCACCTTTCCGGagtgaGAATAACGTGCAGGAGGAGCTGTTTGATCAGATCCTGCAGGGCCACGTGGACTTTCCCTCTCCGTACTGGGACAGCATCACCGACTCAGCCAAGGAGCTGATTGGCCAGATGCTGCAGGTGAATTCTGAGATGAGATACACAGCGGAAGATATTTTGTGTCACCCCTGGGTcacgGATGATGCTGCTGTGGACAACAACATGAAGATGGAGGTGACGGGGAAGCTCAAGAAGCACTTTACCTCCGCACAGAAAGAGGGCAACACCACTGCCGGAGTGTCTGTTATTATGAACACAGCTCTAGATAAGGAAAAGCTGCAGCTGTGCCGTCGCAGTCAGGGGAACAGCGCCACCCTGCCTGAAGGGGAAGGAGGATTGGGACACAGCCGCTCTGAGAAGAAAAGCCCCTCTGGCTTATCAGAGGACACCAAAAGCCCTGGAGCCGCCCCTCTTCAGGCTTTACCCTCCCCCTTGCCCTCCTCTGATGCCCCTCCCCTGTCGTCTTCCCCGTCCTCTCCTCGGTGTAGCGAAGAACCCGGCGAAGAGCGAGCCTTTGAGAGGGAGGAATAGATCCGCTtagaacaagaacaacaaccgggagaggaagaaagactgacaaaaatatatacaatacatgTTCTGTTGATTGAAATCCATTCCAGCTTTTGGCTTTTTCTGGAACTGTTGCTTcctcaattgtttttttttttgtctttacacttttggaaacaaaaaagagatataatgatatgaattttaaaagccATTGAATTTGTAATATTGAAATTTAAACATTGAATTCATGGTTACTTCAAAAACcatatatttgtatctg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48257 lncRNA downstream 5613 4538059 ~ 4539526 (-) True G40770
XR_004577552.1 lncRNA downstream 48443 4488546 ~ 4496696 (-) True LOC117596430
TU47974 lncRNA downstream 703979 3792229 ~ 3841160 (-) False G40522
TU48440 lncRNA upstream 56072 4665522 ~ 4665725 (-) True G40936
TU48442 lncRNA upstream 57756 4667206 ~ 4668993 (-) True G40938
TU48466 lncRNA upstream 129934 4739384 ~ 4739711 (-) True G40962
TU48470 lncRNA upstream 134277 4743727 ~ 4744074 (-) True G40966
TU48483 lncRNA upstream 155629 4765079 ~ 4769220 (-) True G40979
XM_026940605.2 mRNA downstream 4516 4511701 ~ 4540623 (-) False fam193a
XM_026940596.2 mRNA downstream 4516 4511701 ~ 4540623 (-) True fam193a
XM_026941951.2 mRNA downstream 71841 4463696 ~ 4473298 (-) True sparcl1
XM_026939714.2 mRNA downstream 249010 4293496 ~ 4296129 (-) True LOC113542300
XM_034303192.1 mRNA downstream 255700 4284375 ~ 4289439 (-) False LOC117596921
XM_034302822.1 mRNA upstream 176323 4785773 ~ 4878809 (-) True arhgap10
XM_034303183.1 mRNA upstream 284452 4893902 ~ 4906239 (-) True tmem184c
XM_026939751.2 mRNA upstream 312338 4921788 ~ 4944595 (-) True ednraa
XM_026943133.2 mRNA upstream 468910 5078360 ~ 5081554 (-) True pou4f2
XM_034302558.1 mRNA upstream 615492 5224942 ~ 5227808 (-) True lsm6
trnah-gug_3 other downstream 1510586 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 1511202 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 1512336 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 2371388 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 2565608 1977326 ~ 1979531 (-) False lgi2b
TU48529 other upstream 594256 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 615580 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 1147261 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 2552024 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 2552024 7161474 ~ 7204151 (-) False lef1

Expression Profile