RNA id: XM_026944599.2


Basic Information

Item Value
RNA id XM_026944599.2
length 8711
RNA type mRNA
GC content 0.49
exon number 59
gene id LOC113545306
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11682864 ~ 11745224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAATGACTTGACGCTCCATTTCCGGAGCACGCGCGCGCTGAGTTCCACCGTTGCTAAGATACGGGTCTTAGTAACAGGCACGCGAACCCGAAGTGGCTGTGAGTTCGCCAGTTAGCTGTTTAACTTAACTTTATGTCTGTTAAAATGACGTTTGCTTAGATGAACGAGGCAGGTTACAACTACCAAATCACTTCCAGTTGGTTGTTTTACCTGTGTTGAATGTCGTTCTTGTACTTTCTGAAGCCTGCTTCGAAACACAGACAGAATAGTTCATTATATCCAGTTGGCTAGTTTGAACGCCAGACACTGCGCTAGCTAACTGTAACAGGTCTCGCGCGGAAAATATGGATCTCCAAATCCGACAATATTTGACACAAGCACAGGATAAAGACGATCCTGTAGCTCTGAGGAAAGCTTATAACACAATCAAGGACGCTATCCCGGGAAAGACAGCATCAGATACTCGGTGTTTCCTCCCTGAACTGTATGTGCTGTGTGCAGAGCAGGCTCTCAGGCTGGGATGTAAGGAGATCACAGAGGACTGCCTAATGATGTACTTAGAGAGCAAACCCCCACCTAATCAGTTTCTATGCCGCATACTTCTGCCAGGCTCAGCTGAACTCACCACGCACTATTGCCTCTGTGGAGGACATGGATAGAGCTGTGACATACTATCTGAAGGCTATAGAGATATCCAAAGACAAGCCGAGATACCATTTTCTAGTCTTCAACGCTTCTGTTCTGTACCTTCAGACAGTGCGAGGTTTCCTGCGGCCTGGTTGGCGGCAGTACCTGGTCTCCTCTCTCACACAGGTGCTCAGTGCTCTGGAGGAGGTAGTCGAACCTGACTATGCCTGGAGGGCTGAACTGATGATACTCCTTGTGGAGTGCCTGGTGGATGCTGGAAAAGAGAACGACGCTGCTGATTTTTCCAAGGTCACCTCTGATTTTATAGAGCAGCACACACCCGAGCTGTATCCCCGAATTTTCTCCATACAGGTGCAACATGATCTTATAGATGTCTCCAACATTTTAACAAAAGCGAGTCCAAAATTACTTGCCATCTATAAACTGCAGAAGCTTAAAAACACGGCTATGAATGAAGGCAGAATAGAATCTGATGAACTGAGGGAGATTTTTCTCCTGCTGACTCATTCATCCCAGACCCAATCACCTGCTTCTAACAGTTTTAGTCCTGACACTGATGACAGTCCTCACATCCCATTGTCTGACCGGTTTGAACTCCTTTTGGAGTTGGCCTTCCTCTCTCTACAGCTGAAAGAGCAGTTCATagctgaggaatgtgtaaaggagcTAAAGATCATTGATGGCACTGCTGTGGGGCAGCATATCATGGTGGAGTGTGTTGCGTGTGAACTGGCCTTTAGTAAACAGAGCATTGAGGACTACACCAAAAGCAGTGTGGAGGCCCAGTTAAGCATAGTAAGCCGTTTGGAAGCATTGCTCCTCAGggcagtgagagagggagatgcTCAGGTGacgcagagtgtgtgtgctgctctgtGGAACAGCTGCTTACCTCTCCTCCAGCATAGTCTCCGGAAGAACCTCAAAAGCCCTCTGCTCACTCTCTCACAAGCCCTAGAAAACATCaatagCATGTCGTTGGACATGCGATGTCAGATCCATGCTGAGCTGGCTGCTGTAGAGGAGGAAGCAGAGAGGTTGGAGCCTGCAGTACAACACCTCCATGCAGCCCTGGGCCTGGATGAGAGTGGCCAGTTCCAACAGCGTCTATCCTTCTCCCTTCACCTCCTTCAGCTGCGCAGCAAACCTTACAGCACTCCTACACGCCCAGAGGACCAGGCAGCCATGCTCATTCAACAGACAAAAGAGCGGGTTGGTGATGAGCCAGCAAAGAAATGGCGCCCCACACTGGTTAGTGCTGGTATTGCTTTGGCACCTGACACCTTCCAGATGGTCCTAGATGCAGACAGCACAGCTAAAGGTAGCAGACTACAGGACAATGTGGAGCAACTTGCTGCTAAGGCCAAGCACTACAGGACCTGTGTACAAAAAGCAGAATGTCATCTTGCCAGGCTGGAGAGAGACACCAATGACAGAGAGAGGATGAGACTATGGGCATCCCTAGTCAAGGCTGCACGGAAACAGGAGTTGTGGGATGTGTGCAGGGCAGCTTGCCGCTTCTGTCTGCTTTATGATGACAAGAGATGGAAAATCGAGTGTAAACAGATGTACAAAGAAGAGAGTGGAGAGCGAGAGCTGCTGCGTCTGCTGACTGAGGTCCACTTTATCAATGCTGAGGCAACTATTCATAAACTCCGCTCTGAGGGAGTAGAACTCAATGACTCACCTGTCCCGCCTGCTAAGAGAGGAGTGTCCACACTTGATATCCACACTGAGAATGACCCTCAGTGGACTCTTTACAGTGACTGGATTCAAGAGATGTCAGTCTATGCTATGGGTAATTTCCTGCGAGGAGCAGAACTCGGGGCAGAGCTGCAGGAGCCATGGCTGGTGGTTAATGCGGCCGTGTACCTGTGGAACTATAATAACCACATTCTTGCCACAAAGGGGCAGGACAGGCTTGTACCCACATTCAGCCAATTGGTGGAGCTACTCAGACAGACAGGCCATGCAGGGGAAGTGGTGCTGCTTGTCCTGTTGTGCGATGCTGTGGCACAGGGTATCATCCAACCTTGGTGCGGGACATCTGGACAGACTAGTCAGGAGGTAAAGCACCCTCAGGCTCAAGCTGACAACACtaagaaaaatggaaagaaaggaaTGGAGAAATCAGGCTCCACTCCTGCCATTCCCCTGGAGGAAGCTGCTTTGCAGGACATCAAGAAGGCTCTGCAGATGTGTGACTATGCTCTGCATCTGTCCAATGAGAATGATGAGACAGTGCCCATCATGGTTCGAAAGCAGCTTCTTAGCACATGGGTAAATACCAAATGCCTGTTGCAACAGCAGATCGGACAGAACCTCGACATTGATAATGAGTGTAAAAACGAGGCAGTGAAGGCCATGTCACGTGTACTGGTTGGAGTGGAGATGATGCGGTGTAATACTAACCATGGACTGATGGAGTTCTCTGTGCCCAGTCTTACAATGCTCGTGCAAATAGCATCTGACTGTAAATGGTCTGATCCTGTGGTGGAGCTTTATGCATGGTCTCAGCTTGCTCACTTTGCCCATCGGAGCGCTGATCATGACCTTGTTATGATTTGCACCCAGAATGCACTTCAGCTGGATCAGACTGCCATCCATAAGGCAAAAATCTCAGTGTGCAACCTGTACAGCGTGAAAGCAGTGCAGGAGCTGCTGAGCAGTGCTGCATGTTTGAGAGGACTGAGCATGCTTCATAAGTCCTGTGGCCATCCTGCCAAGTACACAGAGGCTCTTGCTGTGCTCCAGACTAGCATCAGCTATGCTGAACAGGCAGGTAGCTGGTCTCTCTGTGGGACTGCAGCAAGGCATTACTGGAACTCATGCCTCCCTCTCTTGGACACTCCTGAGCAGAGACAGCAGCTCCAAAAACCACTGGAGCTTATTGTGAAGGCTCTAACCCGCACCTACCCTCAACCAGCCAGCGTGAGAAATAGAGTAATGAATGCTCAGAAGGAAAGACAAACAGGATCTGCAACCTCAGCACTGGACTCTAACAGTACAGCTGAAGGTGACCTGGCAGTGAGAGCAGCCATGTACAATGTGATGTTCCAAATCCATGTAGACAATGGTAATTTGAGGAGTGGCCTGCAGGTCCTGGATCAGGCCATCAGAGAGATGCCCCGCAGCCCTCACAGACTTAACCTCTATAAGCAGCGGGTACTGGTGAAGGCTCAGCTAGGGGAGAGCATTGAGCTGGACATGCACAAGTTTGCAGAGTATGGAGACGTGGCCTGTGCTATGATGTGGCATCATGTGGCTCTGTCTACCAGAGACACACAGCAAAAAATGCACTGTTATCAGAACGCAATCGATAAATTACATAGTGCTGATAGTCAGTGGCAGAAGGTAGATTTACTACTGGAATTTGCAGAGTGGCTGTACTCTAATAATTTCCCTGTGACTGATGCACAGCTGCAGACCCAGTTGGCCATCGACATTCTGCTCTCCTCTGGTTTGGACACCAGTCAGAGTGACAGGAACCGAGAGACCCCTGGTCAGGCAGATGCCCCAGTCAGCAGTCCGTCTCAGCTGAGTCTACAGGCTCCAACTTCTGTGCCAACTCAAACTGAGCTGAATGATGTGCGCACTCTAGATATCCTggtgcaagcacacacactaaTGGCTCTCATGGAGTCCAGAGTATCTGCCAAGCACCAGCAGTACCTGTTTCAAGCTTATCACTATGTTGTGAAGATCTGGCAGGTGTCCATGGAAACGGCTCAGGAAGTCATCAAAGATGTGTTAAAGAATTCTGATGTTCTGTCTCAGCCTGTGTTAGCAGATAGCCCCAAAAAAGacaaggaaaaagagaaagaaaaagagaaaagcttAAAGTCTAAAGAGCCTTCAACCGTTCAGAAGAAGCCCAAGGTCCCAGGTTTGGACACATCTTTTCCTTTAAGCCCAGAGAAATGGGCTCAATTTGAGTGCCCTGAAGAGTTTCGGCAGGCTTTCAAACATGACCGTGGCCCTTGCTCCATCAACAGCCACAGTATCAGCATGCAGAGCCGGACTTTCTTCTATCTAGATGTCCTGGTGAAAGAGCTGGAATCCATCTCTCTGACTCTGCTGACCCTACCTCCTTTGCATCTGGCTGAGGTCATTGCTCATGATCTCTCACTCAGCAAGAGCCATTCTGACCTTTACCGCCTTAGGATAGTGAAGACCTGTTGTGAACTGGGGCTTGACTCTACATCACCCTACAAAGAAGCATTACTGAGCTTTGCTCATATTCCTGAGGATGAGCAAATTTTATGTCGAAAGACAGTTGCTCTCGAAAGGGAAAGAACAGGACCTCATACAGAGGCTGAAGTGAACAAGACACAGGAGACAGCACCTCCTTGCAGTGTGTGGGGTGTAGCTAGAGGCAGCATGTGCAGGAAGAGGCTGAGTGGATGCGCTGTGCAGGAGCTGTGGCTGGACAAGGCTGCTGTGTGCATCAGTATGGGCCTGTACCAGCCTGCTAGAAGTCTGTTAGCTGAGGCTCACCTGGTGGCCAAGGAACTTGGAGACCAAACCACACTGGCTAAGAGTTTTTACCTGTTGGCTTTTCTGGCCAGTCAGGAGCAGCAGCATGGCCAGGCTCTTGCTTTATTGGAGCAGGCTCAGGAAATTGGCGGGGATGAGGACTTCTGGTACAACCTCATTCAGTGCCTCTTGAACACCACAGCACAGCTTGATGGAGATGACGTTTACACACAGGTGTGTCAGATCACAGACACAGCCCTAAGAGTCTTTAGGTCTGCTCAAGAGCAAAAACCGAATCGAGGCCCAGTCCTCCACTTCTATATTGCGTCACTGCAGGCCAAAGGTGCAGTTCTGTGTCGTCAGTCTCTGAGGGTCACTTGTCCTGGTCACAGTGTTAGTGCTGAGACAATGAAGAAGCTGAATGCAGTGTGTGACACTCTGAAAGACAGTGCTGCAGCATTACGCCAACATGGCTATAAGACCCATGCTGCAGAGACGGCCCTAGAGCAGGCAAACACTCTGAGAATGCTGGCCATGCTCACTTCCataaaagaagagaaacagCAGCACTTGCTTGATGCCCTCTCACTCACACAGCAGGCTGTATCCCTTCAGGAGGAAGTACTTTCCAGTTGCCTCAGACTTCTCCCAACTCAAGAGggtGGGTGGTGTAGGCTGCCTGCCATGCGTGTGTCTGTGCGCTTTAGGCTAGCTCTGGCTGACCTTGGTTTGTTGATTCTGGAGATGCAATGTGAGGTGGAGAAGGTCCAAGCAACAATCCGGAGCAAGATGAGTTCCACTGAGCGAGCTGTGGATGACTATATGAGGAGCAGCTTAGACCTTAATGCTCTACAGAGGGAATGGCTAACCATAGGTCAGTCTGTGGGTCAGCTGACCTTTACCCAGCTGACTGTGGTCCAGTCTCTCATGAAGGACTGTGTTGAAACCAGAGTACAGACGCTTGGCATGCTGGGAAAGTGCTTGAGGCTGTTAGCGCTGCAGAGAGATCCACTCTACCCCACCTCTGTGTGGGACAAACCAACCATGGTGGAAAACGGAGCAgagggaaaggaaaaggaagatGAAAAAGAGGAGAGTAGCAGAGTAGCGGAAGGGCGCGTAACACGGAGACAAAACACTATTAAAAGTGACGAAGTGCAGAACAACAGAAAGGCTGTGCAGCAGATGTTGGTGCAGGCCAGTGAAACTCTAACTGAGGCTTTGAGTCTTGGGCTGCAGCAAAACCTGCCTGAGCTGCTCTCACATATCTGCGAGGAGCTGCTGGAGTCTCACAGCCAGTATGACCCAGCTGCCTTAGGCCAATACCTCGCACTGCTACAGagctgtgtgtgctgtactGAGATGTCCAGAGTGTTAGGTGCTGCCTGTTGGGACAGCAGGCAGTCTCAGGTGGCTGCTCTTCTGGGTCTACAGAAAAGAGTGAAGTTCTCTCAACCCAGCCGCAGCAGCCTGATTTCAGCCATTGACCACTCACTCCACATACTGTCCAAGGCCTACCAGCACCTGATTGTAAACCCTAACCACATGAGCTTCCTGGGAGAACTGCCACCAAATCTCAAAATCCTGCTGTTGCAGCATACTAAAGATGGtTCAGTGCTGTATGGGGCTTTTTATGAAAAATCAAAATCCACTGAAAGTCAGAAAGTTAAGAGTATGCAGACAACAGGTGGGTTAGTGTGCTCCAGAATGGCCAAGGCCCGGGTGCAGCCTTCTGTCCTGCTCCAACTCCAAGATCAAGCCCAAGCCTTTCGACAATTCGCTGCACAAACCATGATCAGAGAGTCCTGCTGGCTCAGAAATGCTATGCAGACTGAGGATTACACACAGCTgaaacacaacacagacCAAGAGTTAAGGGAGCATTTTCAAGCTGTAGTTAAAGGAATGGAGGACTATCTGCATCCTATCCTCTCTCAGTTTGACTTCTCATGTTTAagccAGTGCCCTCAATCAATAGTCATCGACGAGGCAACCCGGCCCAAAGATAAAGAAGAGCAAGAGGCTACAGATAAAGCTTTGCCTGAGTATGGcgagtgtgtagtggtgttagCAGACACTATGTTGCTGGAGTTGCCATTAGAAGCTCTCACTGTTCTGCAGGGAAGTGGAATCAGCTCCATCTCACGGGATTTCTCCTTGCAGGTCTTTCACACACGTCTCCACAGAGACGAGCAAGTTGAAAGTgacaacaaaaaagagagaaaaagtgcaACGGCAGCTAAAGGAAAAGGAGATCAAAGCAAAGCCTTCAAAGTGGCACCCGTGAACCGTGTCTTACCTGCCCACACTCTTTCAGTGGATTCGCACAAGTTCAAATATATTGTTGATCCACACAGTGATGGGGGAGATAGCAGGAGCAGTCCACCAGAGACCATGAGAAAGATTCTAGACATGTACTCAGAACAGTTCACAGCTCACTGGGAAGGACTCATAGGAAGTGAGCAGCCCTGCAGTCCTCAagatgtggagcatctgctgacTAACTGCAGTTCCTTTATCTTCTACGGTCGAGAACCCCTTTTCACCCACATCTCTCCTGACAGACTGGCCAACATCAATCTGAGTGAATGCCAGTTGGCTATCATCCTTGGCTTGGTTCATAACAGCCCTAGTATGTGGCATCAGTCTCAACGGGATATTCAGAAGAGTAAGACCCACCTTcctctggagactcctttagAGTGTGTTCTTCTGCTCACCCTCAGTGGAGTTCACTCCATAATGCTCAACCAGTGGTCCAGCAGCACCAAGACTAATGCACACACCTTGGAAGCTACCTTGGAAAATCTCCTGAAAACAGGACTGACATCTGGTCAGGCTGTCCATACTTTGAGAGCATCTTTGGCCCAGAGAGAGCCTGAATGTGCTCGGAATGAGGATGCTGTACCAGGCTGGAATTCACCCTCTGCTTTCAACTTCATCATCTATGGATTACCTAATTTAATTGTTATCTGAATGCATGGGACATTTTCACATACACCATTGCAAAGAATGTTGaaaataattcagtaatatTACTGTCCCATGCTCAAATATTGACAGATATCATACCTAATACCTACTTGAAGCAGTAACAATGTCCTGGATTGTTTAGCTTTTTTCTATGTTTAACATAATACAAcctgctgtctgttttattgctcttaataaaaattcatttacaaTAGGCTTTGGCTCCACACAACACTGGAGGaagtgaaaacatttattttaagtgcCTATGTCCTGTCCAAGGGGTTCTAGGAGATGCTTGGGCTGGTTGAATTTAAAGGAATAAAGACGTTTACATATGGATTTactacatttgtttaaaaaagatgGGTTTGTTGCTGTGGTCTGGAAGCATGTGGGTTATAATGTTACCCCTCTCAATAAAATCAAGTATTAATTAGCCATTTAGTATAAAAGATTAAGAACtttttcaccttccagcacaataatCACCAAAAACATGAATCCAAGTCAGCAAAGGAATGGCTTTAGAAGAAGGAGATCAACAtcttggaatggcccagtcagagcccaggtCTAAATCCTATTAAAAACCCATGCACAGGAGGTTT

Function

GO: NA

KEGG:

id description
K24938 CFAP46, TTC40; cilia- and flagella-associated protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52526 lncRNA upstream 297704 11384792 ~ 11385164 (+) True G44463
XR_003404586.2 lncRNA upstream 363993 11317785 ~ 11318875 (+) True LOC113545104
TU52456 lncRNA upstream 385154 11297492 ~ 11297714 (+) True G44398
TU52268 lncRNA upstream 627014 11054078 ~ 11055854 (+) True G44221
TU52269 lncRNA upstream 629015 11053575 ~ 11053853 (+) True G44222
TU52776 lncRNA downstream 72504 11817728 ~ 11819947 (+) True G44704
TU52856 lncRNA downstream 209765 11954989 ~ 11995143 (+) True G44777
TU52847 lncRNA downstream 213316 11958540 ~ 11962186 (+) True G44768
TU52933 lncRNA downstream 281600 12026824 ~ 12027030 (+) True G44843
TU52936 lncRNA downstream 284410 12029634 ~ 12030106 (+) True G44846
XM_026941962.2 mRNA upstream 387888 11254621 ~ 11294980 (+) True hs3st1l1
XM_026934587.2 mRNA upstream 475006 11099593 ~ 11207862 (+) True dntt
XM_026934595.2 mRNA upstream 475006 11099593 ~ 11207862 (+) False dntt
XM_034302575.1 mRNA upstream 475006 11099593 ~ 11207862 (+) False dntt
XM_026934604.2 mRNA upstream 508074 11099593 ~ 11174794 (+) False dntt
XM_034302550.1 mRNA downstream 524 11745748 ~ 11766414 (+) False LOC113544122
XM_034302552.1 mRNA downstream 525 11745749 ~ 11766414 (+) False LOC113544122
XM_034302553.1 mRNA downstream 525 11745749 ~ 11766414 (+) False LOC113544122
XM_034302549.1 mRNA downstream 525 11745749 ~ 11766414 (+) False LOC113544122
XM_034302551.1 mRNA downstream 525 11745749 ~ 11763027 (+) False LOC113544122
trnag-ccc other upstream 91463 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 511754 11099593 ~ 11171114 (+) False dntt
XR_004577889.1 other upstream 1074164 10594574 ~ 10608704 (+) False LOC113543929
TU52056 other upstream 1124573 10552259 ~ 10558295 (+) True sprn
trnak-cuu other upstream 3213172 8469624 ~ 8469696 (+) False trnak-cuu
XR_004577785.1 other downstream 525 11745749 ~ 11766414 (+) False LOC113544122
trnay-gua other downstream 891096 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 894612 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 922590 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 1184335 12929559 ~ 12936802 (+) False spef1

Expression Profile