RNA id: XM_026944625.2


Basic Information

Item Value
RNA id XM_026944625.2
length 7389
RNA type mRNA
GC content 0.49
exon number 51
gene id LOC113545306
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11682864 ~ 11745224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCAGAAGCTTAAAAAGCTGTGGGGCAGCATATCATGGTGGAGTGTGTTGCGTGTGAACTGGCCTTTAGTAAACAGAGCATTGAGGACTACACCAAAAGCAGTGTGGAGGCCCAGTTAAGCATAGTAAGCCGTTTGGAAGCATTGCTCCTCAGggcagtgagagagggagatgcTCAGGTGacgcagagtgtgtgtgctgctctgtGGAACAGCTGCTTACCTCTCCTCCAGCATAGTCTCCGGAAGAACCTCAAAAGCCCTCTGCTCACTCTCTCACAAGCCCTAGAAAACATCaatagCATGTCGTTGGACATGCGATGTCAGATCCATGCTGAGCTGGCTGCTGTAGAGGAGGAAGCAGAGAGGTTGGAGCCTGCAGTACAACACCTCCATGCAGCCCTGGGCCTGGATGAGAGTGGCCAGTTCCAACAGCGTCTATCCTTCTCCCTTCACCTCCTTCAGCTGCGCAGCAAACCTTACAGCACTCCTACACGCCCAGAGGACCAGGCAGCCATGCTCATTCAACAGACAAAAGAGCGGGTTGGTGATGAGCCAGCAAAGAAATGGCGCCCCACACTGGTTAGTGCTGGTATTGCTTTGGCACCTGACACCTTCCAGATGGTCCTAGATGCAGACAGCACAGCTAAAGGTAGCAGACTACAGGACAATGTGGAGCAACTTGCTGCTAAGGCCAAGCACTACAGGACCTGTGTACAAAAAGCAGAATGTCATCTTGCCAGGCTGGAGAGAGACACCAATGACAGAGAGAGGATGAGACTATGGGCATCCCTAGTCAAGGCTGCACGGAAACAGGAGTTGTGGGATGTGTGCAGGGCAGCTTGCCGCTTCTGTCTGCTTTATGATGACAAGAGATGGAAAATCGAGTGTAAACAGATGTACAAAGAAGAGAGTGGAGAGCGAGAGCTGCTGCGTCTGCTGACTGAGGTCCACTTTATCAATGCTGAGGCAACTATTCATAAACTCCGCTCTGAGGGAGTAGAACTCAATGACTCACCTGTCCCGCCTGCTAAGAGAGGAGTGTCCACACTTGATATCCACACTGAGAATGACCCTCAGTGGACTCTTTACAGTGACTGGATTCAAGAGATGTCAGTCTATGCTATGGGTAATTTCCTGCGAGGAGCAGAACTCGGGGCAGAGCTGCAGGAGCCATGGCTGGTGGTTAATGCGGCCGTGTACCTGTGGAACTATAATAACCACATTCTTGCCACAAAGGGGCAGGACAGGCTTGTACCCACATTCAGCCAATTGGTGGAGCTACTCAGACAGACAGGCCATGCAGGGGAAGTGGTGCTGCTTGTCCTGTTGTGCGATGCTGTGGCACAGGGTATCATCCAACCTTGGTGCGGGACATCTGGACAGACTAGTCAGGAGGTAAAGCACCCTCAGGCTCAAGCTGACAACACtaagaaaaatggaaagaaaggaaTGGAGAAATCAGGCTCCACTCCTGCCATTCCCCTGGAGGAAGCTGCTTTGCAGGACATCAAGAAGGCTCTGCAGATGTGTGACTATGCTCTGCATCTGTCCAATGAGAATGATGAGACAGTGCCCATCATGGTTCGAAAGCAGCTTCTTAGCACATGGGTAAATACCAAATGCCTGTTGCAACAGCAGATCGGACAGAACCTCGACATTGATAATGAGTGTAAAAACGAGGCAGTGAAGGCCATGTCACGTGTACTGGTTGGAGTGGAGATGATGCGGTGTAATACTAACCATGGACTGATGGAGTTCTCTGTGCCCAGTCTTACAATGCTCGTGCAAATAGCATCTGACTGTAAATGGTCTGATCCTGTGGTGGAGCTTTATGCATGGTCTCAGCTTGCTCACTTTGCCCATCGGAGCGCTGATCATGACCTTGTTATGATTTGCACCCAGAATGCACTTCAGCTGGATCAGACTGCCATCCATAAGGCAAAAATCTCAGTGTGCAACCTGTACAGCGTGAAAGCAGTGCAGGAGCTGCTGAGCAGTGCTGCATGTTTGAGAGGACTGAGCATGCTTCATAAGTCCTGTGGCCATCCTGCCAAGTACACAGAGGCTCTTGCTGTGCTCCAGACTAGCATCAGCTATGCTGAACAGGCAGGTAGCTGGTCTCTCTGTGGGACTGCAGCAAGGCATTACTGGAACTCATGCCTCCCTCTCTTGGACACTCCTGAGCAGAGACAGCAGCTCCAAAAACCACTGGAGCTTATTGTGAAGGCTCTAACCCGCACCTACCCTCAACCAGCCAGCGTGAGAAATAGAGTAATGAATGCTCAGAAGGAAAGACAAACAGGATCTGCAACCTCAGCACTGGACTCTAACAGTACAGCTGAAGGTGACCTGGCAGTGAGAGCAGCCATGTACAATGTGATGTTCCAAATCCATGTAGACAATGGTAATTTGAGGAGTGGCCTGCAGGTCCTGGATCAGGCCATCAGAGAGATGCCCCGCAGCCCTCACAGACTTAACCTCTATAAGCAGCGGGTACTGGTGAAGGCTCAGCTAGGGGAGAGCATTGAGCTGGACATGCACAAGTTTGCAGAGTATGGAGACGTGGCCTGTGCTATGATGTGGCATCATGTGGCTCTGTCTACCAGAGACACACAGCAAAAAATGCACTGTTATCAGAACGCAATCGATAAATTACATAGTGCTGATAGTCAGTGGCAGAAGGTAGATTTACTACTGGAATTTGCAGAGTGGCTGTACTCTAATAATTTCCCTGTGACTGATGCACAGCTGCAGACCCAGTTGGCCATCGACATTCTGCTCTCCTCTGGTTTGGACACCAGTCAGAGTGACAGGAACCGAGAGACCCCTGGTCAGGCAGATGCCCCAGTCAGCAGTCCGTCTCAGCTGAGTCTACAGGCTCCAACTTCTGTGCCAACTCAAACTGAGCTGAATGATGTGCGCACTCTAGATATCCTggtgcaagcacacacactaaTGGCTCTCATGGAGTCCAGAGTATCTGCCAAGCACCAGCAGTACCTGTTTCAAGCTTATCACTATGTTGTGAAGATCTGGCAGGTGTCCATGGAAACGGCTCAGGAAGTCATCAAAGATGTGTTAAAGAATTCTGATGTTCTGTCTCAGCCTGTGTTAGCAGATAGCCCCAAAAAAGacaaggaaaaagagaaagaaaaagagaaaagcttAAAGTCTAAAGAGCCTTCAACCGTTCAGAAGAAGCCCAAGGTCCCAGGTTTGGACACATCTTTTCCTTTAAGCCCAGAGAAATGGGCTCAATTTGAGTGCCCTGAAGAGTTTCGGCAGGCTTTCAAACATGACCGTGGCCCTTGCTCCATCAACAGCCACAGTATCAGCATGCAGAGCCGGACTTTCTTCTATCTAGATGTCCTGGTGAAAGAGCTGGAATCCATCTCTCTGACTCTGCTGACCCTACCTCCTTTGCATCTGGCTGAGGTCATTGCTCATGATCTCTCACTCAGCAAGAGCCATTCTGACCTTTACCGCCTTAGGATAGTGAAGACCTGTTGTGAACTGGGGCTTGACTCTACATCACCCTACAAAGAAGCATTACTGAGCTTTGCTCATATTCCTGAGGATGAGCAAATTTTATGTCGAAAGACAGTTGCTCTCGAAAGGGAAAGAACAGGACCTCATACAGAGGCTGAAGTGAACAAGACACAGGAGACAGCACCTCCTTGCAGTGTGTGGGGTGTAGCTAGAGGCAGCATGTGCAGGAAGAGGCTGAGTGGATGCGCTGTGCAGGAGCTGTGGCTGGACAAGGCTGCTGTGTGCATCAGTATGGGCCTGTACCAGCCTGCTAGAAGTCTGTTAGCTGAGGCTCACCTGGTGGCCAAGGAACTTGGAGACCAAACCACACTGGCTAAGAGTTTTTACCTGTTGGCTTTTCTGGCCAGTCAGGAGCAGCAGCATGGCCAGGCTCTTGCTTTATTGGAGCAGGCTCAGGAAATTGGCGGGGATGAGGACTTCTGGTACAACCTCATTCAGTGCCTCTTGAACACCACAGCACAGCTTGATGGAGATGACGTTTACACACAGGTGTGTCAGATCACAGACACAGCCCTAAGAGTCTTTAGGTCTGCTCAAGAGCAAAAACCGAATCGAGGCCCAGTCCTCCACTTCTATATTGCGTCACTGCAGGCCAAAGGTGCAGTTCTGTGTCGTCAGTCTCTGAGGGTCACTTGTCCTGGTCACAGTGTTAGTGCTGAGACAATGAAGAAGCTGAATGCAGTGTGTGACACTCTGAAAGACAGTGCTGCAGCATTACGCCAACATGGCTATAAGACCCATGCTGCAGAGACGGCCCTAGAGCAGGCAAACACTCTGAGAATGCTGGCCATGCTCACTTCCataaaagaagagaaacagCAGCACTTGCTTGATGCCCTCTCACTCACACAGCAGGCTGTATCCCTTCAGGAGGAAGTACTTTCCAGTTGCCTCAGACTTCTCCCAACTCAAGAGggtGGGTGGTGTAGGCTGCCTGCCATGCGTGTGTCTGTGCGCTTTAGGCTAGCTCTGGCTGACCTTGGTTTGTTGATTCTGGAGATGCAATGTGAGGTGGAGAAGGTCCAAGCAACAATCCGGAGCAAGATGAGTTCCACTGAGCGAGCTGTGGATGACTATATGAGGAGCAGCTTAGACCTTAATGCTCTACAGAGGGAATGGCTAACCATAGGTCAGTCTGTGGGTCAGCTGACCTTTACCCAGCTGACTGTGGTCCAGTCTCTCATGAAGGACTGTGTTGAAACCAGAGTACAGACGCTTGGCATGCTGGGAAAGTGCTTGAGGCTGTTAGCGCTGCAGAGAGATCCACTCTACCCCACCTCTGTGTGGGACAAACCAACCATGGTGGAAAACGGAGCAgagggaaaggaaaaggaagatGAAAAAGAGGAGAGTAGCAGAGTAGCGGAAGGGCGCGTAACACGGAGACAAAACACTATTAAAAGTGACGAAGTGCAGAACAACAGAAAGGCTGTGCAGCAGATGTTGGTGCAGGCCAGTGAAACTCTAACTGAGGCTTTGAGTCTTGGGCTGCAGCAAAACCTGCCTGAGCTGCTCTCACATATCTGCGAGGAGCTGCTGGAGTCTCACAGCCAGTATGACCCAGCTGCCTTAGGCCAATACCTCGCACTGCTACAGagctgtgtgtgctgtactGAGATGTCCAGAGTGTTAGGTGCTGCCTGTTGGGACAGCAGGCAGTCTCAGGTGGCTGCTCTTCTGGGTCTACAGAAAAGAGTGAAGTTCTCTCAACCCAGCCGCAGCAGCCTGATTTCAGCCATTGACCACTCACTCCACATACTGTCCAAGGCCTACCAGCACCTGATTGTAAACCCTAACCACATGAGCTTCCTGGGAGAACTGCCACCAAATCTCAAAATCCTGCTGTTGCAGCATACTAAAGATGGtTCAGTGCTGTATGGGGCTTTTTATGAAAAATCAAAATCCACTGAAAGTCAGAAAGTTAAGAGTATGCAGACAACAGGTGGGTTAGTGTGCTCCAGAATGGCCAAGGCCCGGGTGCAGCCTTCTGTCCTGCTCCAACTCCAAGATCAAGCCCAAGCCTTTCGACAATTCGCTGCACAAACCATGATCAGAGAGTCCTGCTGGCTCAGAAATGCTATGCAGACTGAGGATTACACACAGCTgaaacacaacacagacCAAGAGTTAAGGGAGCATTTTCAAGCTGTAGTTAAAGGAATGGAGGACTATCTGCATCCTATCCTCTCTCAGTTTGACTTCTCATGTTTAagccAGTGCCCTCAATCAATAGTCATCGACGAGGCAACCCGGCCCAAAGATAAAGAAGAGCAAGAGGCTACAGATAAAGCTTTGCCTGAGTATGGcgagtgtgtagtggtgttagCAGACACTATGTTGCTGGAGTTGCCATTAGAAGCTCTCACTGTTCTGCAGGGAAGTGGAATCAGCTCCATCTCACGGGATTTCTCCTTGCAGGTCTTTCACACACGTCTCCACAGAGACGAGCAAGTTGAAAGTgacaacaaaaaagagagaaaaagtgcaACGGCAGCTAAAGGAAAAGGAGATCAAAGCAAAGCCTTCAAAGTGGCACCCGTGAACCGTGTCTTACCTGCCCACACTCTTTCAGTGGATTCGCACAAGTTCAAATATATTGTTGATCCACACAGTGATGGGGGAGATAGCAGGAGCAGTCCACCAGAGACCATGAGAAAGATTCTAGACATGTACTCAGAACAGTTCACAGCTCACTGGGAAGGACTCATAGGAAGTGAGCAGCCCTGCAGTCCTCAagatgtggagcatctgctgacTAACTGCAGTTCCTTTATCTTCTACGGTCGAGAACCCCTTTTCACCCACATCTCTCCTGACAGACTGGCCAACATCAATCTGAGTGAATGCCAGTTGGCTATCATCCTTGGCTTGGTTCATAACAGCCCTAGTATGTGGCATCAGTCTCAACGGGATATTCAGAAGAGTAAGACCCACCTTcctctggagactcctttagAGTGTGTTCTTCTGCTCACCCTCAGTGGAGTTCACTCCATAATGCTCAACCAGTGGTCCAGCAGCACCAAGACTAATGCACACACCTTGGAAGCTACCTTGGAAAATCTCCTGAAAACAGGACTGACATCTGGTCAGGCTGTCCATACTTTGAGAGCATCTTTGGCCCAGAGAGAGCCTGAATGTGCTCGGAATGAGGATGCTGTACCAGGCTGGAATTCACCCTCTGCTTTCAACTTCATCATCTATGGATTACCTAATTTAATTGTTATCTGAATGCATGGGACATTTTCACATACACCATTGCAAAGAATGTTGaaaataattcagtaatatTACTGTCCCATGCTCAAATATTGACAGATATCATACCTAATACCTACTTGAAGCAGTAACAATGTCCTGGATTGTTTAGCTTTTTTCTATGTTTAACATAATACAAcctgctgtctgttttattgctcttaataaaaattcatttacaaTAGGCTTTGGCTCCACACAACACTGGAGGaagtgaaaacatttattttaagtgcCTATGTCCTGTCCAAGGGGTTCTAGGAGATGCTTGGGCTGGTTGAATTTAAAGGAATAAAGACGTTTACATATGGATTTactacatttgtttaaaaaagatgGGTTTGTTGCTGTGGTCTGGAAGCATGTGGGTTATAATGTTACCCCTCTCAATAAAATCAAGTATTAATTAGCCATTTAGTATAAAAGATTAAGAACtttttcaccttccagcacaataatCACCAAAAACATGAATCCAAGTCAGCAAAGGAATGGCTTTAGAAGAAGGAGATCAACAtcttggaatggcccagtcagagcccaggtCTAAATCCTATTAAAAACCCATGCACAGGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52526 lncRNA upstream 303731 11384792 ~ 11385164 (+) True G44463
XR_003404586.2 lncRNA upstream 370020 11317785 ~ 11318875 (+) True LOC113545104
TU52456 lncRNA upstream 391181 11297492 ~ 11297714 (+) True G44398
TU52268 lncRNA upstream 633041 11054078 ~ 11055854 (+) True G44221
TU52269 lncRNA upstream 635042 11053575 ~ 11053853 (+) True G44222
TU52776 lncRNA downstream 72506 11817728 ~ 11819947 (+) True G44704
TU52856 lncRNA downstream 209767 11954989 ~ 11995143 (+) True G44777
TU52847 lncRNA downstream 213318 11958540 ~ 11962186 (+) True G44768
TU52933 lncRNA downstream 281602 12026824 ~ 12027030 (+) True G44843
TU52936 lncRNA downstream 284412 12029634 ~ 12030106 (+) True G44846
XM_026941962.2 mRNA upstream 393915 11254621 ~ 11294980 (+) True hs3st1l1
XM_026934587.2 mRNA upstream 481033 11099593 ~ 11207862 (+) True dntt
XM_034302550.1 mRNA downstream 526 11745748 ~ 11766414 (+) False LOC113544122
XM_034302552.1 mRNA downstream 527 11745749 ~ 11766414 (+) False LOC113544122
XM_034302553.1 mRNA downstream 527 11745749 ~ 11766414 (+) False LOC113544122
XM_034302549.1 mRNA downstream 527 11745749 ~ 11766414 (+) False LOC113544122
XM_034302551.1 mRNA downstream 527 11745749 ~ 11763027 (+) False LOC113544122
trnag-ccc other upstream 97490 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 517781 11099593 ~ 11171114 (+) False dntt
XR_004577889.1 other upstream 1080191 10594574 ~ 10608704 (+) False LOC113543929
TU52056 other upstream 1130600 10552259 ~ 10558295 (+) True sprn
trnak-cuu other upstream 3219199 8469624 ~ 8469696 (+) False trnak-cuu
XR_004577785.1 other downstream 527 11745749 ~ 11766414 (+) False LOC113544122
trnay-gua other downstream 891098 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 894614 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 922592 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 1184337 12929559 ~ 12936802 (+) False spef1

Expression Profile