RNA id: XR_003404598.2


Basic Information

Item Value
RNA id XR_003404598.2
length 6845
RNA type misc_RNA
GC content 0.50
exon number 46
gene id LOC113545306
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11682864 ~ 11745224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACCTGTAATGACTTGACGCTCCATTTCCGGAGCACGCGCGCGCTGAGTTCCACCGTTGCTAAGATACGGGTCTTAGTAACAGGCACGCGAACCCGAAGTGGCTGTGAGTTCGCCAGTTAGCTGTTTAACTTAACTTTATGTCTGTTAAAATGACGTTTGCTTAGATGAACGAGGCAGGTTACAACTACCAAATCACTTCCAGTTGGTTGTTTTACCTGTGTTGAATGTCGTTCTTGTACTTTCTGAAGCCTGCTTCGAAACACAGACAGAATAGTTCATTATATCCAGTTGGCTAGTTTGAACGCCAGACACTGCGCTAGCTAACTGTAACAGGTCTCGCGCGGAAAATATGGATCTCCAAATCCGACAATATTTGACACAAGCACAGGATAAAGACGATCCTGTAGCTCTGAGGAAAGCTTATAACACAATCAAGGACGCTATCCCGGGAAAGACAGCATCAGATACTCGGTGTTTCCTCCCTGAACTGTATGTGCTGTGTGCAGAGCAGGCTCTCAGGCTGGGATGTAAGGAGATCACAGAGGACTGCCTAATGATGTACTTAGAGAGCAAACCCCCACCTAATCAGTTTCTATGCCGCATACTTCTGCCAGGCTCAGCTGAACTCACCACGCACTATTGCCTCTGTGGAGGACATGGATAGAGCTGTGACATACTATCTGAAGGCTATAGAGATATCCAAAGACAAGCCGAGATACCATTTTCTAGTCTTCAACGCTTCTGTTCTGTACCTTCAGACAGTGCGAGGTTTCCTGCGGCCTGGTTGGCGGCAGTACCTGGTCTCCTCTCTCACACAGGTGCTCAGTGCTCTGGAGGAGGTAGTCGAACCTGACTATGCCTGGAGGGCTGAACTGATGATACTCCTTGTGGAGTGCCTGGTGGATGCTGGAAAAGAGAACGACGCTGCTGATTTTTCCAAGGTCACCTCTGATTTTATAGAGCAGCACACACCCGAGCTGTATCCCCGAATTTTCTCCATACAGGTGCAACATGATCTTATAGATGTCTCCAACATTTTAACAAAAGCGAGTCCAAAATTACTTGCCATCTATAAACTGCAGAAGCTTAAAAACACGGCTATGAATGAAGGCAGAATAGAATCTGATGAACTGAGGGAGATTTTTCTCCTGCTGACTCATTCATCCCAGACCCAATCACCTGCTTCTAACAGTTTTAGTCCTGACACTGATGACAGTCCTCACATCCCATTGTCTGACCGGTTTGAACTCCTTTTGGAGTTGGCCTTCCTCTCTCTACAGCTGAAAGAGCAGTTCATagctgaggaatgtgtaaaggagcTAAAGATCATTGATGGCACTGCTGTGGGGCAGCATATCATGGTGGAGTGTGTTGCGTGTGAACTGGCCTTTAGTAAACAGAGCATTGAGGACTACACCAAAAGCAGTGTGGAGGCCCAGTTAAGCATAGTAAGCCGTTTGGAAGCATTGCTCCTCAGggcagtgagagagggagatgcTCAGGTGacgcagagtgtgtgtgctgctctgtGGAACAGCTGCTTACCTCTCCTCCAGCATAGTCTCCGGAAGAACCTCAAAAGCCCTCTGCTCACTCTCTCACAAGCCCTAGAAAACATCaatagCATGTCGTTGGACATGCGATGTCAGATCCATGCTGAGCTGGCTGCTGTAGAGGAGGAAGCAGAGAGGTTGGAGCCTGCAGTACAACACCTCCATGCAGCCCTGGGCCTGGATGAGAGTGGCCAGTTCCAACAGCGTCTATCCTTCTCCCTTCACCTCCTTCAGCTGCGCAGCAAACCTTACAGCACTCCTACACGCCCAGAGGACCAGGCAGCCATGCTCATTCAACAGACAAAAGAGCGGGTTGGTGATGAGCCAGCAAAGAAATGGCGCCCCACACTGGTTAGTGCTGGTATTGCTTTGGCACCTGACACCTTCCAGATGGTCCTAGATGCAGACAGCACAGCTAAAGGTAGCAGACTACAGGACAATGTGGAGCAACTTGCTGCTAAGGCCAAGCACTACAGGACCTGTGTACAAAAAGCAGAATGTCATCTTGCCAGGCTGGAGAGAGACACCAATGACAGAGAGAGGATGAGACTATGGGCATCCCTAGTCAAGGCTGCACGGAAACAGGAGTTGTGGGATGTGTGCAGGGCAGCTTGCCGCTTCTGTCTGCTTTATGATGACAAGAGATGGAAAATCGAGTGTAAACAGATGTACAAAGAAGAGAGTGGAGAGCGAGAGCTGCTGCGTCTGCTGACTGAGGTCCACTTTATCAATGCTGAGGCAACTATTCATAAACTCCGCTCTGAGGGAGTAGAACTCAATGACTCACCTGTCCCGCCTGCTAAGAGAGGAGTGTCCACACTTGATATCCACACTGAGAATGACCCTCAGTGGACTCTTTACAGTGACTGGATTCAAGAGATGTCAGTCTATGCTATGGGTAATTTCCTGCGAGGAGCAGAACTCGGGGCAGAGCTGCAGGAGCCATGGCTGGTGGTTAATGCGGCCGTGTACCTGTGGAACTATAATAACCACATTCTTGCCACAAAGGGGCAGGACAGGCTTGTACCCACATTCAGCCAATTGGTGGAGCTACTCAGACAGACAGGCCATGCAGGGGAAGTGGTGCTGCTTGTCCTGTTGTGCGATGCTGTGGCACAGGGTATCATCCAACCTTGGTGCGGGACATCTGGACAGACTAGTCAGGAGGTAAAGCACCCTCAGGCTCAAGCTGACAACACtaagaaaaatggaaagaaaggaaTGGAGAAATCAGGCTCCACTCCTGCCATTCCCCTGGAGGAAGCTGCTTTGCAGGACATCAAGAAGGCTCTGCAGATGTGTGACTATGCTCTGCATCTGTCCAATGAGAATGATGAGACAGTGCCCATCATGGTTCGAAAGCAGCTTCTTAGCACATGGGTAAATACCAAATGCCTGTTGCAACAGCAGATCGGACAGAACCTCGACATTGATAATGAGTGTAAAAACGAGGCAGTGAAGGCCATGTCACGTGTACTGGTTGGAGTGGAGATGATGCGGTGTAATACTAACCATGGACTGATGGAGTTCTCTGTGCCCAGTCTTACAATGCTCGTGCAAATAGCATCTGACTGTAAATGGTCTGATCCTGTGGTGGAGCTTTATGCATGGTCTCAGCTTGCTCACTTTGCCCATCGGAGCGCTGATCATGACCTTGTTATGATTTGCACCCAGAATGCACTTCAGCTGGATCAGACTGCCATCCATAAGGCAAAAATCTCAGTGTGCAACCTGTACAGCGTGAAAGCAGTGCAGGAGCTGCTGAGCAGTGCTGCATGTTTGAGAGGACTGAGCATGCTTCATAAGTCCTGTGGCCATCCTGCCAAGTACACAGAGGCTCTTGCTGTGCTCCAGACTAGCATCAGCTATGCTGAACAGGCAGGTAGCTGGTCTCTCTGTGGGACTGCAGCAAGGCATTACTGGAACTCATGCCTCCCTCTCTTGGACACTCCTGAGCAGAGACAGCAGCTCCAAAAACCACTGGAGCTTATTGTGAAGGCTCTAACCCGCACCTACCCTCAACCAGCCAGCGTGAGAAATAGAGTAATGAATGCTCAGAAGGAAAGACAAACAGGATCTGCAACCTCAGCACTGGACTCTAACAGTACAGCTGAAGGTGACCTGGCAGTGAGAGCAGCCATGTACAATGTGATGTTCCAAATCCATGTAGACAATGGTAATTTGAGGAGTGGCCTGCAGGTCCTGGATCAGGCCATCAGAGAGATGCCCCGCAGCCCTCACAGACTTAACCTCTATAAGCAGCGGGTACTGGTGAAGGCTCAGCTAGGGGAGAGCATTGAGCTGGACATGCACAAGTTTGCAGAGTATGGAGACGTGGCCTGTGCTATGATGTGGCATCATGTGGCTCTGTCTACCAGAGACACACAGCAAAAAATGCACTGTTATCAGAACGCAATCGATAAATTACATAGTGCTGATAGTCAGTGGCAGAAGGTAGATTTACTACTGGAATTTGCAGAGTGGCTGTACTCTAATAATTTCCCTGTGACTGATGCACAGCTGCAGACCCAGTTGGCCATCGACATTCTGCTCTCCTCTGGTTTGGACACCAGTCAGAGTGACAGGAACCGAGAGACCCCTGGTCAGGCAGATGCCCCAGTCAGCAGTCCGTCTCAGCTGAGTCTACAGGCTCCAACTTCTGTGCCAACTCAAACTGAGCTGAATGATGTGCGCACTCTAGATATCCTggtgcaagcacacacactaaTGGCTCTCATGGAGTCCAGAGTATCTGCCAAGCACCAGCAGTACCTGTTTCAAGCTTATCACTATGTTGTGAAGATCTGGCAGGTGTCCATGGAAACGGCTCAGGAAGTCATCAAAGATGTGTTAAAGAATTCTGATGTTCTGTCTCAGCCTGTGTTAGCAGATAGCCCCAAAAAAGacaaggaaaaagagaaagaaaaagagaaaagcttAAAGTCTAAAGAGCCTTCAACCGTTCAGAAGAAGCCCAAGGTCCCAGGTTTGGACACATCTTTTCCTTTAAGCCCAGAGAAATGGGCTCAATTTGAGTGCCCTGAAGAGTTTCGGCAGGCTTTCAAACATGACCGTGGCCCTTGCTCCATCAACAGCCACAGTATCAGCATGCAGAGCCGGACTTTCTTCTATCTAGATGTCCTGGTGAAAGAGCTGGAATCCATCTCTCTGACTCTGCTGACCCTACCTCCTTTGCATCTGGCTGAGGTCATTGCTCATGATCTCTCACTCAGCAAGAGCCATTCTGACCTTTACCGCCTTAGGATAGTGAAGACCTGTTGTGAACTGGGGCTTGACTCTACATCACCCTACAAAGAAGCATTACTGAGCTTTGCTCATATTCCTGAGGATGAGCAAATTTTATGTCGAAAGACAGTTGCTCTCGAAAGGGAAAGAACAGGACCTCATACAGAGGCTGAAGTGAACAAGACACAGGAGACAGCACCTCCTTGCAGTGTGTGGGGTGTAGCTAGAGGCAGCATGTGCAGGAAGAGGCTGAGTGGATGCGCTGTGCAGGAGCTGTGGCTGGACAAGGCTGCTGTGTGCATCAGTATGGGCCTGTACCAGCCTGCTAGAAGTCTGTTAGCTGAGGCTCACCTGGTGGCCAAGGAACTTGGAGACCAAACCACACTGGCTAAGAGTTTTTACCTGTTGGCTTTTCTGGCCAGTCAGGAGCAGCAGCATGGCCAGGCTCTTGCTTTATTGGAGCAGGCTCAGGAAATTGGCGGGGATGAGGACTTCTGGTACAACCTCATTCAGTGCCTCTTGAACACCACAGCACAGCTTGATGGAGATGACGTTTACACACAGGTGTGTCAGATCACAGACACAGCCCTAAGAGTCTTTAGGTCTGCTCAAGAGCAAAAACCGAATCGAGGCCCAGTCCTCCACTTCTATATTGCGTCACTGCAGGCCAAAGGTGCAGTTCTGTGTCGTCAGTCTCTGAGGGTCACTTGTCCTGGTCACAGTGTTAGTGCTGAGACAATGAAGAAGCTGAATGCAGTGTGTGACACTCTGAAAGACAGTGCTGCAGCATTACGCCAACATGGCTATAAGACCCATGCTGCAGAGACGGCCCTAGAGCAGGCAAACACTCTGAGAATGCTGGCCATGCTCACTTCCataaaagaagagaaacagCAGCACTTGCTTGATGCCCTCTCACTCACACAGCAGGCTGTATCCCTTCAGGAGGAAGTACTTTCCAGTTGCCTCAGACTTCTCCCAACTCAAGAGggtGGGTGGTGTAGGCTGCCTGCCATGCGTGTGTCTGTGCGCTTTAGGCTAGCTCTGGCTGACCTTGGTTTGTTGATTCTGGAGATGCAATGTGAGGTGGAGAAGGTCCAAGCAACAATCCGGAGCAAGATGAGTTCCACTGAGCGAGCTGTGGATGACTATATGAGGAGCAGCTTAGACCTTAATGCTCTACAGAGGGAATGGCTAACCATAGGTCAGTCTGTGGGTCAGCTGACCTTTACCCAGCTGACTGTGGTCCAGTCTCTCATGAAGGACTGTGTTGAAACCAGAGTACAGACGCTTGGCATGCTGGGAAAGTGCTTGAGGCTGTTAGCGCTGCAGAGAGATCCACTCTACCCCACCTCTGTGTGGGACAAACCAACCATGGTGGAAAACGGAGCAgagggaaaggaaaaggaagatGAAAAAGAGGAGAGTAGCAGAGTAGCGGAAGGGCGCGTAACACGGAGACAAAACACTATTAAAAGTGACGAAGTGCAGAACAACAGAAAGGCTGTGCAGCAGATGTTGGTGCAGGCCAGTGAAACTCTAACTGAGGCTTTGAGTCTTGGGCTGCAGCAAAACCTGCCTGAGCTGCTCTCACATATCTGCGAGGAGCTGCTGGAGTCTCACAGCCAGTATGACCCAGCTGCCTTAGGCCAATACCTCGCACTGCTACAGagctgtgtgtgctgtactGAGATGTCCAGAGTGTTAGGTGCTGCCTGTTGGGACAGCAGGCAGTCTCAGGTGGCTGCTCTTCTGGGTCTACAGAAAAGAGTGAAGTTCTCTCAACCCAGCCGCAGCAGCCTGATTTCAGCCATTGACCACTCACTCCACATACTGTCCAAGtTCAGTGCTGTATGGGGCTTTTTATGAAAAATCAAAATCCACTGAAAGTCAGAAAGTTAAGAGTATGCAGACAACAGGTGGGTTAGTGTGCTCCAGAATGGCCAAGGCCCGGGTGCAGCCTTCTGTCCTGCTCCAACTCCAAGATCAAGCCCAAGCCTTTCGACAATTCGCTGCACAAACCATGATCAGAGAGTCCTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52526 lncRNA upstream 297700 11384792 ~ 11385164 (+) True G44463
XR_003404586.2 lncRNA upstream 363989 11317785 ~ 11318875 (+) True LOC113545104
TU52456 lncRNA upstream 385150 11297492 ~ 11297714 (+) True G44398
TU52268 lncRNA upstream 627010 11054078 ~ 11055854 (+) True G44221
TU52269 lncRNA upstream 629011 11053575 ~ 11053853 (+) True G44222
TU52776 lncRNA downstream 90956 11817728 ~ 11819947 (+) True G44704
TU52856 lncRNA downstream 228217 11954989 ~ 11995143 (+) True G44777
TU52847 lncRNA downstream 231768 11958540 ~ 11962186 (+) True G44768
TU52933 lncRNA downstream 300052 12026824 ~ 12027030 (+) True G44843
TU52936 lncRNA downstream 302862 12029634 ~ 12030106 (+) True G44846
XM_026941962.2 mRNA upstream 387884 11254621 ~ 11294980 (+) True hs3st1l1
XM_026934587.2 mRNA upstream 475002 11099593 ~ 11207862 (+) True dntt
XM_034302550.1 mRNA downstream 18976 11745748 ~ 11766414 (+) False LOC113544122
XM_034302552.1 mRNA downstream 18977 11745749 ~ 11766414 (+) False LOC113544122
XM_034302553.1 mRNA downstream 18977 11745749 ~ 11766414 (+) False LOC113544122
XM_034302549.1 mRNA downstream 18977 11745749 ~ 11766414 (+) False LOC113544122
XM_034302551.1 mRNA downstream 18977 11745749 ~ 11763027 (+) False LOC113544122
trnag-ccc other upstream 91459 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 511750 11099593 ~ 11171114 (+) False dntt
XR_004577889.1 other upstream 1074160 10594574 ~ 10608704 (+) False LOC113543929
TU52056 other upstream 1124569 10552259 ~ 10558295 (+) True sprn
trnak-cuu other upstream 3213168 8469624 ~ 8469696 (+) False trnak-cuu
XR_004577785.1 other downstream 18977 11745749 ~ 11766414 (+) False LOC113544122
trnay-gua other downstream 909548 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 913064 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 941042 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 1202787 12929559 ~ 12936802 (+) False spef1

Expression Profile