RNA id: XM_034303132.1


Basic Information

Item Value
RNA id XM_034303132.1
length 5952
RNA type mRNA
GC content 0.38
exon number 7
gene id glra3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3572427 ~ 3641748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTCCAGAATGTTCATTATGATGCAGTTGAGTCAGCGTGTTAATGGATTACAGAGTGAACATCTTCCTGCGACAGCAGTGGAACGATCCACGTCTGGCCTACAGCGAGTACCCAGATGACTCTCTTGACCTTGACCCCTCCATGTTAGACTCCATCTGGAAGCCGGATCTGTTCTTTGCCAATGAAAAAGGTGCACACTTTCACGAAGTCACCACCGACAACAAGCTGTTGAGGATATTCAAGAACGGCAATGTCCTTTATTCTATAAGATTGACCCTGACACTTTCGTGTCCAATGGATCTGAAGAATTTCCCCATGGATGTACAGACATGCATCATGCAGCTGGAGAGCTTCGGCTACACGATGAACGATCTGATCTTTGAGTGGCAGGAGAACGGACCCGTGCAGGTGGCTGAAGGACTCACGCTTCCTCAGTTCATCCTGAAGGACGAGTCTGATCTCAGATACTGCACCAAGCATTACAATACAGGAAAGTTCACATGCATCGAGGTGCGTTTTCACCTGGAGAGGCAGATGGGTTATTATCTGATCCAGATGTACATCCCCAGTCTGCTCATCGTCATCCTCTCCTGGGTGTCCTTCTGGATCAACATGGACGCTGCTCCTGCTCGCGTAGCTCTGGGCATCACCACAGTGCTCACTATGACCACACAGAGCTCTGGCTCCAGAACCTCTCTGCCTAAGGTTTCCTACGTGAAGGCCATAGATATCTGGATGGCCGTGTGTTTACTCTTCGTGTTCTCGGCTCTGCTGGAGTACGCAGCGGTGAACTTTGTCTCGAGGCAGCACAAGGAGCTGCTGCGGTTCCATCGGCGGAGAAAGAAGTCGAGAAAGgAGGAGGAAGTGCGTGAAAGCCGTCACAGTTATGCCCCGAACACAGGGAAAGACATCCCGATGGCCAAATCCACCAATAACACGGGCTCTAACTCGCTCCAGGCCCAGACGAGCGCTAACATCACTAGTAAGAGTCcagaagagatgagaaagatCTTCATCGACCGCGCCAAGAAGATCGACACCATCTCACGTGCTGGATTTCCTCTGGCCTTCCTCTTCTTCAACATTTTCTACTGGGTTCTGTACAAAATCCTACGGCACGACGTCCACAAACCCTAAACACGGAGCCTGACCAGGTGGGCGGAGCTTCAGCCTGACGGACAGCTACATAcgtgattatatattatatatacatacatgatATGTACTCAACTGTCGTCATTGGGACcaggaagtgttacagtgacATGGACCACATGGTcacaacacgcacacactaTGCAACTGAGAGACATCATggagcaacacaacacacacacacacacacacacatacacacacttgcacacactcacacacactcaatcccCAAGCCTCCCTGGATCTCACTCTTTGCTCTCGTCATCTCTCTCGTGTCCTACAGCCTGTTACTGCCAGCGTAGTGTTTTAATACAACACGATTCAAAAATAGAAACGTACACAAGTTACATAAAAGATAAAGGAAATAGATCAATGTTCTTTTTCtatgattataaaataattttatactcCAAAGACTAGAATCATCCCCTTAAATGAAGGcttaaaggatttttttattaatttatccaAGTCTGATTGATGAGTGTGGGaatgtatagtttatattttaaaaggtGCATGCTTTTAGTTTCAGGTTGCAAATGTAGCTGgtggttttaaaaagaaatacatataGAGAAAGTAGTAAAAATTCAGcgtagtacacaaagtttccagagaaactgGACATTTGGGTAATTTTCTCATTTAAACAGATCATCCAGTTTGAATATCTAATGAAGAATAACTAACCTAATGTCCAACACATCCTGTTTCTCTCGACACGTTGTGTACTACACTGAACTTTTACTACATCCACTATCATTACTGCACTTACATgctatatactgtactgtacagaaGCCTTAGGCACCAGTAACCACATGctataaagcaaaaaaacataaaagatcTACTGTAAAGAGCAGAAAACAGTAATAACGTAAACAAGGTCAATATTTGATGTTATACCTACATACAACCGTTTGCTTTAAATGCATTAGTGGTCTCGGGcacattttgtgtatgtttAGAAGGAAAGcagctggtaagtttttgttttgttttgtttcttttttttttttttcttttttttttgagcatcttggagaatctgatGCAGTTCTTCTGAAGActctgattctttttttttcttttttttttcccccccagatAATCAGATAATCCCTGATGACCttcagaaaagagaaagagagctaTTGCGCAATATATCACTTTCCTATAACATTTAAGTTTTGTTGTAATGcttggaaatttaaaatgttttgtcacTGCAGAAAGCAAACATCTAAGgaaaaaaattgcttaaaaaaatttGGACGCCTAAgatttgcacagcactgtacagtatatgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgcgctaAATTCATTTCCCTTTCAGTTGCATGCACTTGACATAATGTGAACGCTTAATGTGaaattgtatataataataataataataataataataataataataaccatgaatattaaacaaaaaaaatgaaacgttGCGATGACTGTATGTTATCAGGTAAAgtccattttttgttttgttgtttgtttgttttgttttgttttgttatttaatatctGTAAGTTCCAGGGAAGTTGAAGTTGTCTCCCActattcaaaacattttttgtaattaatctcCATTAAACTCTGCGTATTAATGAACTACATCATATCACACTAAAGCAGctctgaattgaattaaactaaATCATTTGCTTTAAACGTATCtctcatacagtatattttgttcatttgtttttgttcattttatttatttatgcaaatgaggcttcatcTAATTGAAGtgcatatatttgcatactCGTTAAAACCAAAAATCCTCTAATAGTCCTTTGGATGAAGTTGggattaacattttttaatgtttatttcactgtgaagacGCTCTCAAGAGAAAGATTTTGTtcttataaaaaatgttttgggtcatttttcattacaaaaactaatgtaaatcaaacaatGTAATAGGTTCCTCAATAGGAACAGGAATaagatttcatgaatgcagaaaccgcatttatttgttctgaatggagaaaaatgattTTGAGAGAATTTCTTTAATACAGTGCAGTTTAATGTTTCCTCTCTGGTTAATCGGGATGCAAACCTCAGGCTCCCACATGATATGATGCCATTTTGATTCTTAAGGCAATGctttgatatttgatgatgctactgaatctgaatctgaatcatacGATACAATTTGATTttgattcgattcgattcaattcagCATCCTCTGATTAATGTGTGACCaaatttgttcagaatctggagtAGGCCTAAAGTTAATTTGCGAATGATGATGACAAAGGACTATTTCAAAAGTATCAGTGATGTAGGCACGTCACTTTTTAATAAGAATcaatttataatcaattataattggtaataattgatttataatTGTTGCCAAGATTCATTTCAGTCATAGCCTTTTACATCAACGAATCACAAATTGTCCGATCATTACATCCCTGCTAGTTTGCAttgtttataaagtttataaaggaaattgacatgtatatcataatgacaTGTCAATTATATATGtcaggaaacaagcttttctTCCTAGGATGTActgtatgaaatgaaataattgggaagtgggcggagcttcaaGCCAATTGGTTGAAAATGAGTGgacacaaacagtgaaataaatacttTTCTGTTATAGATGTAATTtagaataaatctgaaaaatgattgacaggaacAAAATTGTTGTATCTATCTGTagtgttgttaaaaaaaacaaattaattttataaacaatGTCTGTCACCACCACAGAGCGGGACGATCTCTGGATCCGTActagtttctcagtaatacTCGCTCACAGTAATCAGGACCAGTCATCCATATCACTTCAGTTTTCCCTTTAACAAAAGCAGCACTGTTCAGTAACACACTGCCAGTCTCCAATACTAATCACCGTGCCTGATAGCCAGTACTGCCCATGTGTTTGAAATTAATAGCAGAACCAGATTTTAGGataatatgatatttatttggTTCATATGATATATAGGAGGTGTGTTTCCTTTCTCCTACAACACTGCCAGTACTCATTGCAGTTTCAATTGTATTtctatagcgcttttaacaacagacagaAAAGCCAgctgtagatttagatccagTGTGGTGACGAAAAACTACCTGAGAtgacgtgaggaagaaaccataactcaaaagggaatgcagattgtgaataagagcgCTGAGATGAGCACAAGGCAGAGTTTATGATTTAGGATTGTAAGTCAAACATCGGATGCATGAGACGCGTGGTTGAagtatgaatgtgtgtacatttcttttaaaagaaaatgtaatgaatgtgaGCTGCATGTCTGGCATATCTAGAATAGGTAaagaatcatttaaaaacagtgGTAGTCCAGAGATTAAATcaaaagtccaccctgaaacacattaaatacttctacagtgaaatatttatgatgtgtttagcAGTTCTGATGCTAATACGTTGATTGGTGCTGTGTTATTCCTGTACGAAGTTAGCAGATGTGGGTCGCTCTGATGTCACAGGaggacattgttattgctagcacaCTTACAATGGAGTTTAACAGGAGAAAACAAATCAACAGTCTCAAACATAAGGAAGAACGATCAGGTTTCACAGTTAGCTCCTAAAGAAAATGTGTATGAGACTTTGGTGCAAATGCTGGACTCActgtcccagaatgcaatgcagattcagctcggctagttagcgatctatgagATCGATATTAGCAATATTAGCATGAACGTTGgtgctttggaagctgatctgttcgAGCAGAGCGTACACATGGggaagtgagagagctggacagactaaaggattaaagcaccgctgcatcgCTTTCTTTAGCAGAGATAAAGTGAAGCCAGCACCACTATCAGCGGGTAATCAAGtgggcattgtgggtaatgtaggaaacagtTAATGAAGTGAAGGCTGAACATCACATATGGAGTATGAATCTCGATATGAATGtggttcagggtggattttctTCCTTTAATGGTGTGAACCAGTgacctgaaggttgtgagttcaatcTCAGCACTGCCTCAAAACCACTTTTTGGCTGTTAGGCGAGATTTTATTCTGCCTACCTTATATATCACTTGGATATGAAGATATTACAAATATCAAGTGTATCTTTCTGTTGATTCTGTTGATCAGTGTGGTTCTGTTGCAGAGGTTACTAGTAACAGAACTTTGAATAAAGTTGGGAAAATAGGGGAAATAATTACTAAAGCAGTGAAGAAAAGGTAAACAATAATggtgaaataaattatttaataatcaacagaaaatatattactatatactcTTATGTACAAATTGATCTGTCTGATGTAATTTATGGAAATCCccataaaattatacatatatctccagtatttattttcatttgcacATAACACTTTGATATGCCtcataaatataatgaatataatgaactttttatttaacataaaaatttagagagtaaaacatttaacagtGACAGATTTACATCACACTGCTACAGAGACGAGATGTTTGTGTACATTTCTAAtgcaaatgtttaataatttattttgtacGCTTGTTATGCATGAACCAGTTATGATATTGatgtatattacattttttccaATGTGAACTGGACCTGTCCTACTGTtcctgctgagagagagagagagagagagaagctcaaATGTTATCTTCTGTAAATAATTTTCTCATATCTA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0016594 glycine binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577906.1 lncRNA upstream 79279 3515101 ~ 3525121 (+) True LOC117596918
TU47566 lncRNA upstream 79307 3515101 ~ 3525093 (+) False LOC117596918
XR_004577844.1 lncRNA upstream 201294 3400795 ~ 3403106 (+) True LOC117596855
TU46198 lncRNA upstream 1173313 2427812 ~ 2431087 (+) True G38962
TU46183 lncRNA upstream 1177800 2411201 ~ 2426600 (+) True G38948
TU47719 lncRNA downstream 41595 3683343 ~ 3685205 (+) True G40287
TU47821 lncRNA downstream 222948 3864696 ~ 3865000 (+) True G40374
TU48045 lncRNA downstream 488367 4130115 ~ 4130322 (+) True G40586
TU48049 lncRNA downstream 585445 4227193 ~ 4227431 (+) True G40590
TU48050 lncRNA downstream 586434 4228182 ~ 4228548 (+) True G40591
XM_026939299.2 mRNA upstream 101280 3434345 ~ 3503120 (+) False gpm6ab
XM_026939308.2 mRNA upstream 101280 3434962 ~ 3503120 (+) False gpm6ab
XM_026939291.2 mRNA upstream 101280 3457528 ~ 3503120 (+) True gpm6ab
XM_026938936.2 mRNA upstream 228284 3373213 ~ 3376116 (+) True LOC113541773
XM_034302844.1 mRNA upstream 246680 3356563 ~ 3357720 (+) False LOC117596854
XM_034302975.1 mRNA downstream 2730 3644478 ~ 3668492 (+) True hpgd
XM_026944703.2 mRNA downstream 58831 3700579 ~ 3712836 (+) True fbxo8
XM_026933871.2 mRNA downstream 160816 3802564 ~ 3805829 (+) True hand2
XM_026944688.2 mRNA downstream 190119 3831867 ~ 3834626 (+) True LOC113545357
XM_034302875.1 mRNA downstream 190210 3831958 ~ 3834626 (+) False LOC113545357
XR_004577910.1 other upstream 1438616 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 1513094 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 1513179 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 1513559 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 1607148 1983657 ~ 1997252 (+) False cdk2ap2
TU47789 other downstream 190201 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 1621834 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 1676786 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 3562202 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 4007450 7649198 ~ 7666033 (+) False naa15b

Expression Profile