RNA id: XM_026944957.2


Basic Information

Item Value
RNA id XM_026944957.2
length 2422
RNA type mRNA
GC content 0.47
exon number 10
gene id cdkl1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12343235 ~ 12356768 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgctgtgtgagTGAAGCGCTGGGTTTTGGAGATGGTGTGGGTTTTGTGGTGTCGCTCTGCGCATTCACTGCGCTTTGAGAAGGTGGAGCCTGTGCGCTGTTCCTATGGGGACCGAGGCGCATGTAAATGCCCAGCTCCTTCAGGCCACctcacacacccctacacactCCCACGggccccccacacacacacacaaacacacacacacacacgggcactGAGCTCTCACTGGCCCACAGCAGCACCACCTGCACGGCGCACTTTGGAGCGAGCAGGCGCAGTCAGGTTGATCAGTGCATgagggaggtggaggtggtGCACCAGAGTGCTCTGGGATTCCGCTTGGCTTCACAGCATGGAGAAGTATGAGAAGATTGCAAAGATCGGAGAAGGTTCATACGGAGTCGTGttcaaatgcagaaataaagacACGGGACAAATCGTCGCCATTAAAAAGTTCGTGGAGTCAGAGGATGACCCGGTTATTAAAAGAATTGCACTCAGGGAGATCCGGATGctcaagcaATTGAAGCACTGTAACCTGGTCAACCTGATTGAGGTTTTCAGGAGGAAGAGAAAACTGCATCTAGTGTTTGAGTACTGCGATCATACGGTGCTCAATGAGCTCGACAGATATCCCCGGGGagtTCCAGAGCCTCTGGTTAAAAGCATCACCTGGCAAACGCTACAAGCTGTTAACTTCTGCCACAAACAAAATtgcatCCACAGAGATGTGAAGCCAGAGAATATACTCATCACCAAACACCAGGTCATAAAGCTCTGTGACTTTGGCTTTGCCAGGATCCTCAcgggGCCGTGTGATTATTATACAGACTACGTGGCCACTCGGTGGTACCGGGCTCCGGAGCTGCTGGTGGGAGACACTCAGTACGGCCCTCCGGTGGACGTGTGGGCGGTGGGTTGTGTGTTTGCTGAGCTGCTCTCTGGCGCTCCTCTGTGGCCGGGCAAATCTGATGTAGACCAGCTTTATCTCATAAGGAAAACATTAGGTGATTTGATCCCCAGACACCAGCAGGTGTTCAGCAGTAACCAGTTCTTCAGCGGAGTGTGTGTTCCTGAACCACAAGAAATGgaaccCCTGGAGCAAAAGTATCCAAACATCTCTTTCCAGGCATTAAGTCTAATGAAGggttgTCTGCATATGGATCCTGCAGAGAGGTTAACCTGTGAGCAGCTGCTGGAGCATCCGTATTTTGACAGTCAGCGGGAGGAGACAGAGAGCGTGATGCGAGAGCATGACAGAGCGAAGAGACGAGCACGGCAACCCCGTAAACACCTGCCCCCGGGGTATTTACCCCAGCTGACTGGCAGCAGTATCTTCCCAGCGGTGGACAACAGGAAGTACTACAACAACATGCGTAAATTCAACTACCATTTCCCCAACATCTAGTTCTTCACGCTGGAACACACTTTATACACCCCCAATCTGCCCCAAACACTTTCATACACTTTCCTATTTTGGTTTCGCATATACTCACCTACCTTACGTCTTGCTCAGGAACAGAAGTCGCTGAGACAGTAATGCTGGCTGCTCCAGTCACAAAGTGTCCTCGTTTTCTGTAGAAAGAAAATCTCCACCACTCATCTACAGCTGTACTGTCAGTCAGTTCACTGCTGTATCTTTTTGTATACGACTCATCAGACCACTTGTGTACTCTGTGTGATTGACAAAGAGCCCTGCtctgcatgtacacacactgctctgagTGTGACACTGCCTTTCTGATTGCCAAAGTGCTGCGTGACGTGACACAGGGAAAACAGATTGATTGTCTCATATACACAGCTAACGAAGACCTTGGTTAGTGAGAGGATAACTAAGCTGTAGGTAATTAGCATAAAACGTGCAGGAATCAAACAATTCCtctattactgttttttttttttgtacatttatgtttttctgtctctttatatTGTTAATCTCAGACCATCTAACTTCCTGTGACAGACggaggaataaaaaacattccTTCTACTAATATTATTACTCTAGGTCTATGTTCTAAGTGTTGATTTTGGAGTGAATCGCATTTATGAAtcatatgatttaaaaaaaagagagagagagagtataactTGTGTTTTTGATGGCTTTTATTAGAgccttaaacatttaaaacatttaatgataTTATTGTTGCCTTGACAAGTGGTGCTAATGATCTTCTGGCCATTGACTTGCACCCAATGCCAAACTGCTAAAGACACAAGCCCATTCCCCAGCCCTCGGACTCACCTTGTTACCTTCAACACACCCTCTTTCCCTGTAAATATCTCATGACATTTAGTTCTGCTGGTTTTCCAGTAAGACAGGCTCAACAGGGGAGTAAATACGGGAACAAGAAATTCTTGCTCTTTTTGTAtgtgatttattaaagagcTTTCAGCAATGAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53414 lncRNA downstream 39694 12290327 ~ 12303541 (-) True G45236
XR_004577842.1 lncRNA downstream 101114 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 321767 12010931 ~ 12021468 (-) False pwwp2b
TU52938 lncRNA downstream 335206 12007826 ~ 12008029 (-) True G44848
TU52909 lncRNA downstream 429206 11912210 ~ 11914029 (-) True G44820
TU53441 lncRNA upstream 11745 12368513 ~ 12369349 (-) True G45249
TU53462 lncRNA upstream 78506 12435274 ~ 12435483 (-) False nin
XR_004577879.1 lncRNA upstream 270278 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 270909 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 271704 12628472 ~ 12629256 (-) True LOC117596890
XM_034302790.1 mRNA downstream 12307 12291787 ~ 12330928 (-) False klc1b
XM_034302791.1 mRNA downstream 12308 12291787 ~ 12330927 (-) False klc1b
XM_034302789.1 mRNA downstream 12308 12291787 ~ 12330927 (-) True klc1b
XM_034302792.1 mRNA downstream 12308 12304731 ~ 12330927 (-) False klc1b
XM_034302794.1 mRNA downstream 12309 12309548 ~ 12330926 (-) False klc1b
XM_034302694.1 mRNA upstream 1504 12358272 ~ 12401487 (-) True map4k5
XM_026932564.2 mRNA upstream 65513 12422281 ~ 12431644 (-) True sav1
XM_026940747.2 mRNA upstream 78341 12435109 ~ 12465063 (-) True nin
XM_026940757.2 mRNA upstream 78342 12435110 ~ 12465056 (-) False nin
XM_026940765.2 mRNA upstream 81055 12437823 ~ 12465061 (-) False nin
TU53378 other downstream 190729 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 634551 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3114351 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3489441 8801243 ~ 8853794 (-) True G42967
TU53492 other upstream 167868 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 174675 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 275045 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 282484 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 282762 12639530 ~ 12639602 (-) True trnak-cuu_1

Expression Profile