RNA id: XM_026944967.2


Basic Information

Item Value
RNA id XM_026944967.2
length 2648
RNA type mRNA
GC content 0.52
exon number 2
gene id znf503
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18619229 ~ 18622295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGAACGTCACATCCCCTTGACCCTCCAATCACCTCGGGGTCCCATTTGATTGGAAGGCGGCAAGGGCTTTAATCTCAGACTAATTCAGTTGCTTTTGAAGTGAAAATTTCGGGCAGTTCTCGGGCTGGGAGGAGTAGCGCGTGGAGCTGCGGGAGGAGGCAGAGCAGAGCGCGCAATGCCTGTGGTGTCACGCGCAGCTCCGGATCGGCGATAGCCTCGCGCTGTGCGTCTGCCTTCCGCCACGAGCGAACGGATTATACGAGTTTGTCTTTATTTTCGTCCGTTTTTTCGAAGAAGATCGCATCGAAGTAGTTATTGATGCATAGGACGAACGAAACGCCAACAGAATAAATGAGAATTGGGTCATGAGCACATCGCCCTCTGCTACTGCTCTAAGAAATAGCGATACCGATCTAGCCTGGGAAAGCTGCAGTTCTCGGAATAACAGCTCAGCGAGCATCAACAAGCCTTTTCTCCATCCCGTCCCTCCAACGGACCCTTTACGGCAAGCCAAGCGACTTCCCATCAAGGTTCTGAAAATGCTGACGGCACGCACGGGACACATTTTGCACCCGGAGTACCTCCAACCTTTACCGTCTACTCCGGTCAGTCCAATCGAGCTAGATGCAAAGAAAAGTCCGCTGGCTCTTCTTGCTCAGACGTGTTCTCAGATCGGTAAACCGGACCCTCCGCCTTCCTCTAAACTCTCCTCGGTTACATCAAACGGATCTAGCGAGAAGGAGTCCAAGTCCGGTCCTTTAAAACTGAGCGACATCGGCGTGGAAGACAAATCGAGCTTCAAGCCCTACTCCAAACCAGCAGACAAGAAGGACTCGTCCTCGGGGGTTTCTAGCGGGGAGAAGTCTGGTTTCCGTGTGCCGAGCGCCACCTGCCAGCCGTTCACTCCCGGCACGGGCAGCCCGAATTCCAGCACTTCTGCCTCCCCGATGCCGTCCGACGCCAAAGGAGAGAGGGACGAAAAGAAAGACGGAGACTGCAATAAAAGCTGCAGCACGGACGGCTCTGGAGCTACCGGCGTCAGCCACAGCAGGATAAGCGTGAGCTGTGGTGGAATTAACGTGGAGGTCAACCAGCACCAGGAGAGCACGTCTGCATCCAAGGCCGCTACGTCGGAATCGTCGTCGGCGGTGTCTTCCGCTTCCTCGGCGGCTGTTCTGGGGTCGGGGCTTGTGGCACCCGTTTCTCCGTACAAACCGGGACAGACAGTTTTCCCTTTACCCCCTGCCGGCATGACATACCCGGGAAGTTTAGCTGGGGCCTACGCGGGCTATCCTCAGCACTTCCTGCCCCACGGCGGAAGTCTGGTGAACGCGCAGCTCGCCAGCTCCCTGGGCGCAAGCAAAGCTGGATCGAGCCCATTAGCCGGGGCTTCTCCACCGTCCATCATGTCTGCCAGCCTTTGTAGAGACCCGTACTGCTTGAGTTATCACTGTGCCAGTCACTTAGCGGGCGCGGCCGGTGCCTCGTGCACGCACGACTCAGCCGCCGCGGCCCTCAAGTCCGGATATCCGCTCATGTACCCGACGCACCCTTTGCACGGCGTGCACTCCACGCCACCGTCTTTCGGCGGACACCCTTTGTACCCGTATGGCTTCATGCTCCCCAACGACCCGTTGCCTCACGTGTGCAACTGGGTGTCGGCAAACGGGCCATGCGACAAGCGCTTCTCGTCCTCAGAGGAACTGCTTAACCACCTGCGGACGCACACAGCCTTCACCGGCGCCGACAAGTTGATCTCGGGTTACCCGAGCTCGTCGTCCCTTGCCAGCGCTGCCGCCGCGGCCATGGCGTGCCACATGCACATGCCACCGTCCGGAGCGCCTGGAAGTCCCGGCACACTCGCACTGAGGAGCCCGCATCACGCGCTCGGACTAAGCAGTCGCTATCACCCGTACTCTAAGAGCCCGTTGCCTACTCCCGGTGCCCCGGTGCCCGTTCCCGCCGCTACCGGCCCTTATTATTCTCCATATGCACTGTACGGCCAGAGACTCACCACAGCGTCAGCTCTCGGCTACCAGTGAAACGGACTCACACACCCGAAAATTTAGAGCTTATAAAGATTCAAATATAAAGACTTTTATATCAACGCACCACTGAAGGACTGGATCCGTGGACtccactgtatttatttatgtcagcTTAAAGCGGGCAATAATACAAAAGGAAAACTATTTGAGCAAACTCAGAAGTGCATTATGTTTAAATCTCAGTAGGTAAAAGTGAAACACATGTTAGAGTACTAATAAAATAGGGGTTCTTCAGTTCAACATTCATTTGAAATTGCTATGATTGTATTGTACGTTCTTATTTAATGTCTCattgaaaaaggaaataatttacatttgcatgtttgtttttttttaaagcccaaATTGTCCGCATAATTTTAAATTGCCGTTATTTTTCAGGCGTATACCATGGAGAGAGAATTggtatttttttgtatgtattctggaaaaaaaataagaaacaattctgttccataactgtgtcCTCAGTATTCTTTAATATGACGAATACAATTTACATGTGTGTCTATCCcgaatgttttattattatttacattttgcacTGCCATTAATCCTATAATATCGTAAATCATGATTAAATATAGTCTATAATTCA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57465 lncRNA upstream 157033 18460673 ~ 18462196 (+) True G48571
TU57387 lncRNA upstream 396682 18222068 ~ 18222547 (+) True G48494
TU57379 lncRNA upstream 397250 18221308 ~ 18221979 (+) False dlg5a
TU57367 lncRNA upstream 444730 18174300 ~ 18174499 (+) True G48478
XR_004577850.1 lncRNA upstream 534430 18081617 ~ 18084799 (+) True LOC113541886
TU57373 lncRNA downstream 51016 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA downstream 54935 18677230 ~ 18701906 (+) True G48482
TU57372 lncRNA downstream 78561 18700856 ~ 18701906 (+) False G48482
TU57584 lncRNA downstream 85737 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA downstream 85737 18708032 ~ 18710371 (+) True G48690
XM_034303143.1 mRNA upstream 246740 18227260 ~ 18372489 (+) True kcnma1a
XM_026932946.2 mRNA upstream 397179 18176741 ~ 18222050 (+) True dlg5a
XM_026932954.2 mRNA upstream 397179 18176741 ~ 18222050 (+) False dlg5a
XM_026932962.2 mRNA upstream 397179 18176741 ~ 18222050 (+) False dlg5a
XM_026932970.2 mRNA upstream 397179 18176741 ~ 18222050 (+) False dlg5a
XM_026933092.2 mRNA downstream 61201 18683496 ~ 18686611 (+) True comtd1
XM_026933079.2 mRNA downstream 66182 18688477 ~ 18691778 (+) True ifit8
XM_026934506.2 mRNA downstream 73425 18695720 ~ 18699679 (+) True LOC113538988
XM_026935928.2 mRNA downstream 230407 18852702 ~ 18883431 (+) False tet1
XM_026935913.2 mRNA downstream 232546 18854841 ~ 18883431 (+) True tet1
TU55884 other upstream 2382581 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2546162 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2547309 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2822025 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4251783 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 719055 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 719055 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 719055 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 719055 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 719055 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile