RNA id: XM_026945018.2


Basic Information

Item Value
RNA id XM_026945018.2
length 1489
RNA type mRNA
GC content 0.44
exon number 8
gene id lrpap1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8069821 ~ 8080290 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAGCTGTGTGGTTTGGTTGTGAGCTTTTGCCTCAGTATGGGAGTAATGGCGGGGAAATACTCGCGAGAAGTGAATGAGCAGAAAGAGCTGAATGACGGGAAAAATGGCGTGGAATTTCGTATCGCGAAACTGAACCAGGTTTGGGAGAAAGCAAACAGGATGCAGCTCCCCCCAAGGCGGCTGTCTGAGCTCCACAGCGACTTGAAGATTCAGGAGAAAGACGAGCTTCAGTGGAAGAAGTTGAAGGCAGAGGGACTAGATGAGGACGGCGAGAGAGAGGCCAAGCTCAGACGCAACTTTAACATCATCCTGGCCAAGTACGGAATGGATGGTAAGAAGGACAACCGTGCCTTGGACAGCAACAACCTGAAAGACCATGACGCCAAACTGGGCGAAATGTTTGATGACCCCAGACTGGACAAACTGTGGAACAAAGCCAAGTCTTCAGGAAAGTTCTCTGAGGAGGAGCTGCACAGCCTGCGCAAAGAGTTCGAGCATCACAAGGACAAGATCCATGAGTACAACATCGTGATGGACACAGTGAGCCGGACTGAGGAAATCCACAAGAACGTGATTTCTCCACTGGAGGGAGAGGAGAAGATGTCCAATCTGcatgagaaacacacagaccTTAAGCAGAGGATGAGGGACCTGAACCAGGGCTTTGAGCGTCTACGTAAAATCACACATGAAGGCTTCGACAGTGACAAcgAGTTTAAGGAGCCCAGGGTTATAGAGTTGTGGGAAATGGCCAAAAGATCTAATCTTAGTGAGGATGAGCTCGACTCTCTCAAGGAGGAGCTGAAGCATTTCGAGACAAAGGTAGAGAAGCACCACCACTACCAGGAACAGCTGGAGTATTCACACCAGAAACTGCAGCACATAGAGGCCATGGGTGATAAGGACCACATCATGAGACATAAAGAGAAATACAACACACTTGCAGAGAAAGCACGAGAGATCGGATACAAGATGAAAAAACATTTGCAGGATATAACCAACAAAATCTCCAGAAATGGACTGCAGCACAATGAACTCTGAGCATGACCTCCTCTTCTCACCATGACAACACTGAAAATCCTTCATTTCCATATGTGTTGATTATAGTGTGGGTGCAGTCATTGATTTGCTAAAGGTTTGTTTAAATCATTTCAGTATTCACAGAACATTTGCGAATCTACAgcactgatattttttaaatgacattgcATGGTTTTTATTTGGTCCACTGTAAGTGGCAGTAGCAAACCCTATTTGATAGTTTAGGTACGAaaacatatgtacagtatgttacatTTTAAGTCCAATCATTATTTTTGAGTATTTGAGCTGCTGAAGTCATTCCCACAGGAGCAGTACAGGTTGAACTTTGAATGCATCTGTACCCTTCAGAGTTTTAGaaatctttttctgttttcatgaaATTCCATTTATTTGATAATGTAATCTCTGTAAATAAAAGAAGATTGTTCATCCAGTTTATTAA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0008201 heparin binding molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function

KEGG:

id description
K22290 LRPAP1; alpha-2-macroglobulin receptor-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50193 lncRNA upstream 160123 7909424 ~ 7909698 (+) True G42447
TU50188 lncRNA upstream 202903 7866675 ~ 7866918 (+) True G42442
TU50032 lncRNA upstream 336166 7733442 ~ 7733655 (+) True G42307
TU50029 lncRNA upstream 347970 7721649 ~ 7721851 (+) True G42304
TU50015 lncRNA upstream 424899 7640935 ~ 7644922 (+) True G42295
TU50268 lncRNA downstream 95195 8175485 ~ 8176073 (+) True G42522
TU50277 lncRNA downstream 109740 8190030 ~ 8190247 (+) True G42531
TU50244 lncRNA downstream 116582 8196872 ~ 8197242 (+) True G42498
TU50295 lncRNA downstream 139626 8219916 ~ 8223825 (+) True G42548
XR_004577895.1 lncRNA downstream 190120 8270410 ~ 8271905 (+) True LOC117596904
XM_026941926.2 mRNA upstream 298483 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA upstream 298483 7757611 ~ 7771338 (+) True cpz
XM_026943765.2 mRNA upstream 314662 7749636 ~ 7755159 (+) True gpr78a
XM_034301226.1 mRNA upstream 333912 7716040 ~ 7735909 (+) True LOC117596357
XM_034302952.1 mRNA upstream 357275 7704449 ~ 7712546 (+) False LOC113543264
XM_026932353.2 mRNA downstream 361495 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 368367 8448657 ~ 8452951 (+) True dok1a
XM_026934984.2 mRNA downstream 376438 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934975.2 mRNA downstream 376441 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XM_026935251.2 mRNA downstream 431687 8511977 ~ 8517230 (+) True tmem176
XR_003404394.2 other upstream 403788 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 848798 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2713124 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2728071 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 4235210 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 385457 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 389334 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2471969 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2514284 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3019303 11099593 ~ 11171114 (+) False dntt

Expression Profile