RNA id: XM_026945287.2


Basic Information

Item Value
RNA id XM_026945287.2
length 2963
RNA type mRNA
GC content 0.41
exon number 4
gene id ccsapb
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12718905 ~ 12723241 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGATTTGGATCGATCTGACATGAGACGATGGCAGGATTTTATCCATCAGCGttcctttaaaaatatcatGGCGGATGGTTGTTGTCATGTAAAGAAATAGTTCAGATCGGCATCATATCAGCTGTCACGAACACGAACTTAAAAATACAGTGTAGGCCTACTGGACGCATTGTACATAATGTAAACATAAAGGCTGTAGACCTTATTACTTTGACTGCTGTGTATTTCTAAACCGCAGGCTATACAGTGTAGTTGACACACAcggcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtggttcactGTGCAAACAGACGCAATTACTGATAAGTAGCAGGATTATCTCGCCATTTGCACCGCGTTTATCTGTGTGAACGGGCTGAAATCCGCGGTTTGAATAGACATATGTAGTGTAAATATATGAAGGAAGGGTGTGACAAAGCGCTGTCACGAGCAGCTGGTCTGCGATTGGTTCCTCCCAGGAAGGGGCTTTTCCTCAATACGTGTTTTGATTTAAATGTCGGGCGGGAGGGGAGGATCATGCTACCTTCATGTGCTATTGAAATGATTGTAAATACGAGTTTCTGACCTAACCGGTGTCCACGAACCTCTCTAAGAGCTTTGTAGCTTTTGAGAACCGAGTTCTGTAACAAAACCTTTACTTTTTCCTCATAGAAGAGGAACGGGCGCATCCATGGTTGATGCAGGAATATGGTGACCAAACGGATTAGGTCAGAATATATGAAGAAATTTAAGGATCCGAAATGGGAAACGTACGCGAAGTGTTATGAGGATTTGGTGAACTACAGACTGTCGAGGCGGTTGCTGGAGCAAACACACAACCCGTGGTTTTGGGATGAATGTGGAAGCGACACAGAGTCCAGCGGCAAATGTACACCTCAGGAGAGAACTAAGGACTACGGGCTGCAGAAGGAGGAAGAGGCACCAACAGCAGAGACAGCAGTGCACGAAGAGCATGGAGCAGAAGAGGCGAGAGAACCGGATACAAGCCAGATCAGAGaacaaGTAACAGAAGATGTTAAACCTcaggaaaaggaggaagagaaaggcaCAGCACTCTCCCCTGTGGCCCCTGTCATCCCACCAGAAAGGTATCCCCGTGTTCAGACCAATATGAAAAGCAAACCAAGGCATTCATCCAAGCCAACCCGAACTAAAGCCAAGCATCACATCACCAAAGACACTGACAAAGAAAGCAGACATCCTTTTGCTATGTATGGCTcaggagacagacaggcagatatgGCCTCGAAAAGAACGCACAATGTTGGTCCAGCTGCATCAACCAAGGAGATCCATGAGTCTGCACTACGAGCAAAGACCAGACGAGAGGTTGAGAAACAGATGAAGAGAATGGACAAGCGAAGAGCAAAGTCAGCTGACTTGGAAAAGTTGAACAAAAGCAAGCTCGTCCCTGATTATAACCCTTGGATGACTGAGTACATGCGCTGCTTCTCTGCTAGGTCGCAGTAAATCTCTGAGACTGCCAGCAACATTCCTTCCAGTCACAGGTAGAGATCTGCATCCAGCTTGCCAGTCTTCCTTAATGGATTATCATGAAAAatcaaatgacaaaatgatattttaggTCTGTGCTATTTATTTGATCTTACTTGCCCAATTTCTTGCCTCGTGTGTTGACTGGTATTAGTTATCAGAATTTTAAAAGATGTCAGGGACCAGTAAAATAATAgattttatattgcattttaaaaccACAGTCAGCCACCAGAGCATTCTCTCAGAGTCTgccaacattaaaatatatgttgtatgttttatttgcaTTGGTGCAGAACCTCAAAACTGGACTATCAGACGCAGTAATCCACAACAGAAGCCTACTGTACAAAATGAAAGCTAGTTTTAGCATCGTTCAATAATTTTAACTTGCATTATTAACATATCATGAATAGTGTATTGAAGATGCTAAATTTTAGactcaggctttttttttctaggaatTACATGTGTCAGTTTTGATGGTTTATATTTGCCAGTATGTACTGGCAAATTAGATGTAATTATGATGATAAGTTTATACTCAATCCATTCCATAGTGTGATTTATGGCATAGATTTACTTTCACTGAGGACATGTTCCTACAACCTTTTGATATGCCTGGTTTTGTAAAAGACTTCCAAAGCATCCATCCAAAGCATCGGTTTAAATGAAACCACTATCTTTTTTTTGACCTGTCATTATGTCCCCAGCACTTTTCAAAGTTTACAAAAGTTGTACTCATTATCTACACAGTGTAGCTTAATTGAAGTGGGACAAATATCTCTGGTTTAATGTGAATATGTATTCTGTATTGTTcaacataaattacataatgctacagaaatgctacagaaaaTGCTGTGTAATATCTTTTTCAGGGAAGAAATATCGTGCCCAATGGTGCACCACTATGTTGCCCTTGTTACTGTAACATTATGACATCCTAAAAATCTACTTATCTTGTAATAGAGGATTGGGCCACCACTGATTCCAGGATTTTTGAAGACTAAAATGACATTAGTATTTCTCAAGGATGCTAAGCAAGTCATTTTTCTGTATTGTAATAGTGATTTGTTTAGTGGTGAATTGTTAGTGATTATAATGAAGCCATAATGTTGCTTCTGAGTCACAGAAGAACAAAGATCTACCAGTTATTGTCTGTGTAAAAAGCTGAGCGATCTGGTTTGAAGAGTGCATAGATATGACTTTAGGGTTTGTGGTTTTGGCTGTATGTGAACGTGCAGTAgtgtatttggacagtgacagcgATGGGATTTTGAGTCACTCACTGCAGACTTGTGGGGACTCAGTATTTTACTCTCAGCTTTAGTGTTCATATCATTATTACTTGAAAAGGTTATAGTTGTGAGTGTTGCTTAATTCAGTGCCACCACGATGTGTTTCtcaaatgtattaataaacCTTTTTCTAGTTTTA

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0048666 neuron development biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0007420 brain development biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0030424 axon cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005814 centriole cellular_component
GO:0005819 spindle cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K16454 CCSAP; centriole, cilia and spindle-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53325 lncRNA upstream 44435 12674408 ~ 12674623 (+) True G45170
TU53285 lncRNA upstream 70652 12647895 ~ 12648406 (+) True G45153
XR_004577794.1 lncRNA upstream 75754 12639317 ~ 12643304 (+) True LOC117596823
XR_003404309.2 lncRNA upstream 220039 12489514 ~ 12499019 (+) True LOC113542444
TU53152 lncRNA upstream 403188 12315533 ~ 12315870 (+) True G45040
XR_004577841.1 lncRNA downstream 10191 12733432 ~ 12739226 (+) True LOC117596851
TU53595 lncRNA downstream 87678 12810919 ~ 12811250 (+) True G45351
TU53604 lncRNA downstream 97615 12820856 ~ 12821389 (+) True G45360
TU53620 lncRNA downstream 146762 12870003 ~ 12870223 (+) True G45376
TU53723 lncRNA downstream 236849 12960090 ~ 13031136 (+) True G45453
XM_026938498.2 mRNA upstream 1736 12714631 ~ 12717322 (+) True acta1b
XM_026938485.2 mRNA upstream 6269 12702450 ~ 12712789 (+) True abcb10
XM_034303040.1 mRNA upstream 103851 12613042 ~ 12615207 (+) True LOC117596891
XM_026944249.2 mRNA upstream 109219 12607529 ~ 12609839 (+) True LOC113545096
XM_026944537.2 mRNA upstream 115309 12601078 ~ 12603749 (+) True LOC113545271
XM_026936770.2 mRNA downstream 36456 12759697 ~ 12762641 (+) True pdcd2
XM_034302928.1 mRNA downstream 45762 12769003 ~ 12774087 (+) True zgc:153169
XM_034302929.1 mRNA downstream 46376 12769617 ~ 12774087 (+) False zgc:153169
XM_034302930.1 mRNA downstream 46376 12769617 ~ 12774087 (+) False zgc:153169
XM_034302931.1 mRNA downstream 46376 12769617 ~ 12773210 (+) False zgc:153169
trnat-ugu other upstream 51172 12667814 ~ 12667886 (+) True trnat-ugu
TU53286 other upstream 75863 12639836 ~ 12643195 (+) False LOC117596823
trnay-gua other upstream 82652 12636320 ~ 12636406 (+) True trnay-gua
XR_004577785.1 other upstream 952644 11745749 ~ 11766414 (+) False LOC113544122
trnag-gcc other upstream 1012053 11706935 ~ 11707005 (+) True trnag-gcc
XR_004577802.1 other downstream 206318 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 206318 12929559 ~ 12936802 (+) False spef1
XR_003404144.2 other downstream 259165 12982406 ~ 12999962 (+) False col17a1b
TU53738 other downstream 309038 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU54033 other downstream 774851 13498092 ~ 13501046 (+) False pcbd1

Expression Profile