RNA id: XM_034302186.1


Basic Information

Item Value
RNA id XM_034302186.1
length 3715
RNA type mRNA
GC content 0.48
exon number 20
gene id ldb3a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10076289 ~ 10128979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGCCTCTGTGCTATCGGTTTCTGCAGAGAGATGCCTATTCTTAGGCTGTCAGTCCAGCCCATCTGAGCAGAGGCTACTTAGCACCTTCCCGATCTTCACCTCCATTTTTCTCCAACTGTGTGGAGGAAGACGTGCAAAACAAATAATACAGCGATTTTTTTGAACCATGAGCACTTATACTGTGACACTTGCTGGACCTGCGCCATGGGGCTTCCGCTTGCAAGGAGGCAAAGACTTCAACATGCCCCTCACCATTTCCCGGATCACTCCTGGGAGCAAAGCAGCTTCAGGTAACCTGACCCAGGGTGACATCATCGTAGCCATTGACGGTGTCAGCACTGAGGGCATGACTCACCTGGAGGCTCAGAACAAGATCAAGAGTGCCAACTTCAACCTGGCCCTCACCATGCAGAGGTCAAAGCGCCCAATCCATGTGTCCATGACTGCACCAAGAATCGACACTTCAATTCCTGTCATCCCTCACCAGAAGGTTATTACCAACATGCCTATCAACAACGAGTACGTGCCCAGTTTCAACCCCATTGCCCTGAAGGACACAGCTCTTTCCACCAACAAGCCCATTGAAGTGAAGGGGCCGGGAGGCAAGGCCACTATCATCCATGCCCAGTACAACACTCCGATTAGCATGTACTCGCAGGATGCCATCATGGACGCAATCGCTGGTCAGTCTCAGGCCAGAGGGGCTGAATTGTCCGGCGATGAGGCTCTCTCTGGCTCTCCCCTTTCTAGTCTGCCTGTTAAAGAGCGTGTTATAGACAGTGCTTCCCCAGTGTATCAGGCTGTGAATTCCAGCGGAGAAGTGCTAGAGCCTGCTGAGTGGGCACGGAGAGCCGCCCACATGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACCTCACCGGCACTGAATACATGCAAGACCCAGATGAGGAAGCTCTTACAAGAGCGAGTACGCCTGTCCAGCATGCTGCGGTCTCCACCAGCACAGCCCCTGTTGCTCTGTCCGCTTCTGCAGCTTTGCCCAGTCAGCTCGCCGCTGAGCTGCAGATAGCCAATCAGGTGCCTGAGCAGACTGCTGAACCAGCCTCTGTAGGCTCTAGCCATGTCAGCTTTGTGTCACCCCCTGAGCCACAGGCTATATCTCAAGCTGACCCTGTGGCTCACGAGGCCCATGAGGCCCCTGTTCTCCCCCCTGAGGGGCCACGCCACCTGTCGCTTGCTGCCTCAACCATTTCAACTGCTTTGACTGCTCAATCTAGAAACCATGTGTATAAGAAAGGGTCGCCACCCACCTCTGCGCTGGAGGCCCTGTCAATCACTCCATACTTCCGCAGCAGAGCTTTGCCCAAACGCAAGCAATcaggaaaagcaaagaaagtgaGCTTCACCACGCAGTCCTCATCCAGTTACAGATCACAGTACCAAACCTCCGCCATCAGcggCCAGTATGCACAGCAGCCACCTATACAGCAAGCTCCACATGCTCAACAGCCTCTTCATATTCAAACAACTCCACACAGTCAACAGGCCCCGCCCATGCAGCAGAGCTCCATCCACATCCCTGTAGGTCCGTCTCCAACTAAAGTGGTCAGCACCGCCACCATTGTGCCTACAGCTTATCCTACTGCTCCAGCATACGAGTGGCAGGGGGAGAGGGCACAGCGTGGTGTCCATTTCGGAGAAGCCCCCGTTCAAGCCCCTGCTCCCGCTCTTGCTCCAGCCCCACCTCCTGCCCCAGTTCACATTCCTCCTCCTGCCCCAGTTTATGTCCCTCCTCCTGCCCCAGTTCATTTGCCTGCTCCCACCCCTCCTGCTCCTGCCCCCGGCCCCGTCCAATCCTCCAGCAGACCCCCATGGGTCATGGATGACACTTTTGCCCAAAAGTTTGATCCCAGCAAGACCACCACCACCAGCGTCAAAGTGCAGCCTCTTCCCACTGCGGCCCCACCGCCTCCTGCCTACATCCCCAACCCTTCTCCTGCCCCTGCTGCCCCCAGCCCTGCCTCAGCCCCCTTTATCCCTGCCCCTTTCCCACCTGTGGCTCGTGGTGTGGCACAGAGAGCAGAACGCTTTGCTGCCAGCAATAGGACACCAATGTGTGCTTTCTGCAACAGCATCATCAGGGGGCCCTTTCTTGTGGCACTGGGCCGCTCGTGGCACCCGGAGGAGTTTAACTGCCATTACTGCCACACATCTCTGGCTGATGTCAGCTTTGTGGAGGAGCAGAATAATGTTTACTGTGAGAACTGTTACAGAGAGTTCTTTGCCCCTACCTGTGCCCGCTGCAACACTAAGATCATGGGAgaagtgatgcatGCTCTGCGGCAGACCTGGCACACTACCTGCTTTGTGTGTGCTGCGTGTGGGAAACCATTTGGAAATAGCCTCTTTCATATGGAGGATGGAGAACCTTACTGTGAGAAAGATTACATTGCGCTCTTCAGCACTAAGTGCCATGGCTGTGATTTCCCAGTGGAGGCTGGGGACAAGTTTATTGAGGCTCTTGGCCACACATGGCATGACACCTGCTTTGTGTGTACGGTTTGCCATATAAATCTGGAAGGCCAGCCGTTCTATTCTAAGAAGGACAAACCTTTATGCAAGAAACACGCTCACGCCATCAATGTGTAAATCCACCAGGAGTACAGTGATCGTGCTGGTCACTGCCTTTGCCTTAATATTGGTTAGAGCTCTTTTAGAGAAGGATCCGAAACCAATTTAAATACGGATCCGAAAAATAAAACAGCCGAAcctacatattatatatttaatactaatactaatattaaaaaacagGTGAGTTGATGCaatgttatgttttaatttaatacagaTATAGTGAATTTAGCGTGTGCTCTGGGAATAGATAGATCATCTTAATGCATTTAATGCGATTTGCTATGAAGTGAACATTCAGAGCTCTAAGTGTAcaatgtgagaaaaaaatatatcatttcagTTGAACTTGAATTGATTTTATGATCATGCATGTTGCGTTTGCAATGTGCTCATTTTAGTCGGGGTgattgagttttattttattgattgagctttttatttaaatagaatttGATATTTCACTTTAATTGTGTTAGGATTGTGGATTGTGTAGATTTTTCATTGGTAAATGAATGCAATACACGCCTATAGAGAGGCAagttagtatttttattttagttagaAACACTTGGTATGAGgtataataatgtgttttaactTAAATAAAGTTGCTGGGTgtgaaatatgtattttaagCAAAGTGTTCCTGATTTCTTTATGCCCAGATATTAATATTGATGTTGACATTACATCTGTTAATGCCTGAAATGTACCCGTGTACCTGTGCCTTAAATCCCTCAAAGAGAAccttaataattttatttaatgagtttttattttccacaagatgctttatttgtatacatCAAGGTTTATGAGAACTAAGAGATAATAATGTAACACTGGTACCATGAGGTCACTTGGCTGAAACAGTTGGCTGGTGTGCAGTTGTTTTATTGCTGAGTTGGTTTGATacctaatttatttttgttttgtgtatgtgtgacgGGCAATGCATGGATTGTTTGaatctgtatatataatgtttcaGTTCTACTGATAGCAAATAATTTATCACATCTGGCCTGTTGATCTAAAATCCAAAtgtctgtcttttgttttttaattgaagTAACAGaaagagttttgcatgttc

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51707 lncRNA downstream 44214 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 47080 10028411 ~ 10029209 (-) True G43782
TU51745 lncRNA downstream 48474 10027604 ~ 10027815 (-) True G43781
TU51743 lncRNA downstream 49820 10026269 ~ 10026469 (-) True G43779
TU51710 lncRNA downstream 52247 10021567 ~ 10024042 (-) True G43752
TU51754 lncRNA upstream 4355 10127414 ~ 10127631 (-) True G43790
TU51773 lncRNA upstream 35870 10158929 ~ 10161502 (-) True opn4a
TU51888 lncRNA upstream 118882 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 130665 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 142297 10265356 ~ 10265588 (-) True G43981
XM_034302697.1 mRNA downstream 4166 10035488 ~ 10072123 (-) True bmpr1aa
XM_034302698.1 mRNA downstream 15837 10035488 ~ 10060452 (-) False bmpr1aa
XM_026944892.2 mRNA downstream 67754 9999991 ~ 10008535 (-) False sncga
XM_026933400.2 mRNA downstream 79644 9994621 ~ 9996645 (-) True zgc:193505
XM_034302933.1 mRNA downstream 99873 9961961 ~ 9976416 (-) True shld2
XM_034303063.1 mRNA upstream 13251 10136310 ~ 10161523 (-) False opn4a
XM_026942424.2 mRNA upstream 13251 10136310 ~ 10161523 (-) False opn4a
XM_026942432.2 mRNA upstream 13251 10136310 ~ 10161523 (-) False opn4a
XM_034303064.1 mRNA upstream 13251 10136310 ~ 10152599 (-) False opn4a
XM_034302776.1 mRNA upstream 42659 10165718 ~ 10233081 (-) True usp54a
TU51003 other downstream 847405 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1222495 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1222495 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1292491 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1605860 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1585555 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2021836 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2401577 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2408384 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2508754 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile