RNA id: XM_026945478.2


Basic Information

Item Value
RNA id XM_026945478.2
length 3103
RNA type mRNA
GC content 0.45
exon number 15
gene id mocos
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18140689 ~ 18149740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGTGGGAAGTCAGGCAGTCAGTCCCACTGGAGCAGAGTTCCAGTCAGAGGCGTGTTGTGCACTTCGCCTTGTTTTCTCCGCTCACATGTGGACTTGGGACTCACTGTAGTCTGTCACACAGTACAGTTCATTGGACAGAATGTCAGCGACAGACAGCCAGTAAGAGAGGCTGACATTTTGATATAATGGAGGAGTATTCGAGTGAATTTAGCCGCCTGTGCACGTTTGAGAGCTTTAAGGAAATCTGGCCGGGTTACAGTTTCGGCtcagagcagcagcagctcatcCGCCGCGAATTTTCCAGACTCAACGATATTACCTACCTTGATCATGCGGGGACAACATTCTTTGCCGAATCCCAGGTCAAGTCGTTTTATGAGGATATATCCAGGAATGTGTACGGTAACCCTCACAGTCTCAATCCCAGCAGTAAGATGACACATGACACAGTGGAGAGGGTCAGATACAGGATACTGGAGCACTTTAACACCAGCCCTGAGGAATACTCAGTCATTTTCACTGCTGGCTGCACTGCAGCTCTTAAATTAGTGGCTGACTCTTTTCCTTGGACGTCTGCTTCTGATGAACATTCAGGAAGTCAATTCTGCTACCTCACTGACAATCACACGTCAGTAGTGGGCATTCGGGGAGTAACTGAACCTCAAGGAGTGGGAACAGTGCCTGTCTTTCCTCAGGAAATAGAAGCGAGAGCCAAAGCTAGCCAAGTCACAATGAATACCCAGGATGAATGCTTGGTGGCACATCTTTTCTGTTATCCTGCCCAGAGCAATTTTTCTGGGCGGAAATATCCACTGAGCTATGTGAGAGGGATTCAGCGTCAGCAGCTCTACCCAGCGTGCGAGCACAGAGGTCGATGGTTTGTTCTGCTTGATGCTTCTGGTTTTGTTGGCTGCTCGCCACTGGACCTGAAGCAACACCCAGCTGACTTTGTGCCCATCTCTTTCTATAAAATGTTTGGATTCCCCACTGGACTTGGAGCCTTAGTAGTGAGGAATGAAGCAGCTGAGCTGTTGAAAAAGAAGTATTTTGGTGGAGGGACAGCAGCAGCTTATCTGGTGGCAGAGGACTACTTTGTACCAAAGTCTGACATAGTTAGCAGATTTGAAGATGGAACCATTTCATTCCTTGATATTATTTCCCTCCATCATGGGTTTGATGCTCTGCACAGACTGACTGGAAGCATGATGAACATACAGCTTCACACATTTGGCCTAGCTCGTTATACCTACATCATACTGTCTTGCCTGTGCCATAGCAATGCACAACCTGTGGCTCAGATCTATTGTGACAGTGAGTTTGAGAATGCAACAGATCAGGGTGCAATCCTCAACTTCAACCTGCTGGACTGCTATGGCCAAGTGGACAAAATGGCCTGTCTGTTCAATATTCATTTGCGCACAGGCTGTTTCTGTAACACAGGGGCCTGTCAGACATATCTAGGCATCAGCAACGAAGAGGTAAAGAGTAACTTACAGGCTGGTCATGTCTGTGGAGACAACATTGACCTGATTGATGGACGTCCAACTGGGTCTGTCCGCATATCCTTTGGGTATATGTCAACTTTTGAAGACtgtcagtgtttattaaagtttattgTTGACTGCTTTGTGGAAAAACCGCTAAGACTGAACCAAAAGAGACTGGCAACGTTAAAGTCAGCTGGAATGGCAGAGACCTCGGCTTCAAATGAGCTGACCTCATTGCCGACCGAGAGACCTGTGCCTGTGATGAATGGCTTAAATATCTCTCCTGCTTCTGTCAGCAAGACCTCGTCACAGGATACTATTCCAAAGGAAGATAGGAACAGTGAAGACGCTTACACATTGACCAATATCTTCATATATCCTATTAAGTCATGTGCTGCATTTGAGGTGACAGAATGGCCTTTGGGCCCTCAGGGGCTCTTGTATGACCGCATATGGATGGTGGTGAATGAGAATGGAATATGTCTCAGTCAGAAGAGAGAACCCAAACTGTGTCTTATCAATCCACACATTTGCCTAACTTCCAAGACACTGTGTCTGGAAGCCTCAGGTATGGATCCTATTACTCTTCCCCTGGAGATCAGTCAAGAAAAGGATGGCCCAAGACCATGTCAAAGCAAAGTCTGTGGTGACAGGGTACAGACTGTTGACTGTGGAGAGGAAGTGTCAGTTTGGCTGTCTAAGTTCCTGGGAAAACCTTGTTGTCTCATTAGACAGAGTCCCAGTTTTGCCCGGGATATGAGAATTGGCAAAGGAAAGGGTACAGCACTCAGTTCCTGCCCTCCTGTCCTCTCTCTGGTGAATGAAGCTCAGTTTTTGCTAATTAACAGATCTAGTGTGGCACTTCTGCTTAATCACATCATTAACAGGCAGGACAGCTCAAATAATTGTACCTCTTTCAACATGCTGCAACTCATCAATCGTTTTCGGGCAAACCTTGTTATTTCGGGCTCGGATCCTTTTGAAGAAGAGGACTGGACAAGTATAAAAATAGGAGGCACACACTTTCAGGTGGCAGGCAAGTGTAGTCGTTGCCAGATGATTGGAATAGACCAGACCTCTGGCACTAAATCCCAAGAGCCTCTCAGATCTCTGTCTGATTGCCGGAATGGAAAGGTCACATTTGGAGTATACTTGAATCACCTTTTACAGAGATCCTATCCATATCCTACTTTATCTGTTGGGTCCCGTGTGACGACAAAACCAACAGCTGAATTTTAGATAACCACTGTAATATGCAGCATGTGTATAAAACCTAGTCTTAACCTGTGTCCTCTAAAACTGTATAGGTCTTATGCCAAATTTACATTGCTGACAAAGTGGACCAAAACCTATAATGATTTTATCAAAACAACCTATAAACAAGTAAGAGACCTTTCACAAGGCTATTTTCAAAGATTGACTGAATTCTATGATAGCATTCATAGATAGGTTGTATtgtacagttttcttttttcttttacacgGTTAGAAGcttattataaaacataaaaaactgGTGCGCCATGTATTTTTAACTAATGAGTTGTAACTGAgatgatcatttttattgtcctttatttctaaataaagatACTGATGcaagatttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577850.1 lncRNA upstream 55890 18081617 ~ 18084799 (+) True LOC113541886
XR_003404227.2 lncRNA upstream 55890 18081617 ~ 18084799 (+) False LOC113541886
TU57164 lncRNA upstream 154118 17986281 ~ 17986571 (+) True G48323
TU57144 lncRNA upstream 199367 17902052 ~ 17941322 (+) True G48305
TU57141 lncRNA upstream 243233 17896322 ~ 17897456 (+) True G48302
TU57367 lncRNA downstream 24560 18174300 ~ 18174499 (+) True G48478
TU57379 lncRNA downstream 71568 18221308 ~ 18221979 (+) False dlg5a
TU57387 lncRNA downstream 72328 18222068 ~ 18222547 (+) True G48494
TU57465 lncRNA downstream 310933 18460673 ~ 18462196 (+) True G48571
TU57373 lncRNA downstream 523571 18673311 ~ 18701906 (+) False G48482
XM_026934040.2 mRNA upstream 81523 18056126 ~ 18059166 (+) True fignl1
XM_026945563.2 mRNA upstream 93822 18018399 ~ 18046867 (+) False klc1a
XM_026939202.2 mRNA downstream 8723 18158463 ~ 18173187 (+) True anxa11a
XM_026932946.2 mRNA downstream 27001 18176741 ~ 18222050 (+) True dlg5a
XM_026932954.2 mRNA downstream 27001 18176741 ~ 18222050 (+) False dlg5a
XM_026932962.2 mRNA downstream 27001 18176741 ~ 18222050 (+) False dlg5a
XM_026932970.2 mRNA downstream 27001 18176741 ~ 18222050 (+) False dlg5a
TU55884 other upstream 1904041 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2067622 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2068769 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2343485 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 3773243 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1191610 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1191610 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1191610 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1191610 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1191610 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile