RNA id: XM_026945563.2


Basic Information

Item Value
RNA id XM_026945563.2
length 3712
RNA type mRNA
GC content 0.46
exon number 17
gene id klc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18018395 ~ 18046867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTGagtgaaggagggagggagagtgaAGGAGGGAGTGGAGGAGGCAGTGATTGATCGCAGCGCCTGCAGCAGGAGCTCAGAGGAGCTGAGTTTTCCTCGGCGCTGCTCTGGAGAGAAAAGCTCAGCACACAGTGCACCTTCACCGCCTCACCGGATGGGCTGCTCATTCAGAGCCCCGACAGCCAGCTCTCTTTAAACCCCTGAGACATTACTGAATAAACACTTCGACGCGACTGGATGTTCTACAGAACCgatgcgTGAGGAAATGtcgagtgtggtgtgtgtgaaggaggtGGAGGGGCAGGGTGACCCTGCAGAGAAGCTGTCCCAGGATGAGCTGCTATGTCGGACACGGGAGGTGATGCAGGGGTTGGACGCTCTGCGTGCTGAACACCAGGCCATCCTGGAGGGTCTGATGGGAACGCTGCGTTGCCTCAAACAAACCCAGGAAGGCCGCGCTGTCGAAGAGAAGACTGTCATGATTCAGCGCTCGCTGGAAATGATAGAGCTCGGTCTTAGTGAAGCACAGGTAATGATGGCTCTTTCAGGGCACCTGAGTGCAGTAGAGGCTGAGAAACAGAAGCTTCGAGCACAGgtccGGCGGCTGTGCCAAGAGAATCAGTGGCTGCGTGATGAGCTGGCAGGCACACAGCAGCGGCTGCAGAAGAGTGAACAGAGTGTGGCCCAGctggaggaggaaaagaagCACCTGGAGTTCATGAATCAGCTAAAAAAATATGACCAGGACCTCAGCCCAACAGATGACAAAGACTCTGACTCGAGTAGGGAGACTCTGGATGATCTTTTCCCTGATGATCAGGACGAGCCAGCCTCTGGCATCCAGCCCCCACACAGCAGTGCTGTAGCAGCAGCTCAGCAGGGAGGCTATGAGATTCCAGCCCGGCTCCGAACCCTGCACAACCTGGTGATCCAGTATGCCTCTCAGGGCCGCTATGAAGTGGCCGTGCCGCTGTGTAAACAGGCGCTGGAGGACTTGGAGAAGACCTCGGGCCACAACCACCCTGATGTCGCCACAATGCTTAACATTCTTGCCCTCGTCTACAGgGACCAGAATAAGTACAAAGAGGCTGCAAACCTTCTGAATGACGCACTCGATATTAGAGAGAAAACACTGGGCAAAGACCATCCTGcgGTGGCCGCTACACTGAATAATTTGGCTGTCCTTTACGGTAAGCGTGGGAAATACAAAGAAGCAGAACCACTATGCAAAAGGGCACTGGAGATAAGAGAAAAGGTGCTAGGGAAGGACCACCCAGATGTGGCAAAGCAGCTGAATAACCTGGCTTTGCTATGTCAGAACCAGGGCAAGTATGAGGAAGTGGAATATTACTACCAGAGAGCCCTTAACATCTATCAGACCAAGCTGGGCCCTGATGACCCCAATGTAGCCAAGACCAAAAACAATCTGGCCTCGTGTTATCTGAAGCAAGGGAAGTTTAAGCAAGCAGAGACTCTCTATAAAGAGATCCTCACACGAGCTCATGAGAGGGAGTTTGGCTCTGTAGATGgTGAGAACAAGCCTATCTGGATGCatgcagaggagagagaggaacagagtaAAGGGAAGCAGAAAGATGGCTCCCCATTTGTAGAGTACGGTGGCTGGTACAAAGCCTGCAAAGTGGACagCCCCACCGTAACGACCACACTGAAGAACTTGGGTGCTCTGTACAGGCGGCAGGGCAAGTTTGAGGCGGCTGAGACTCTGGAGGAAGCTGCTATGCGCTCCCGAAAAAAGGGTCTGGACTCAGCCCATAAACAGCGTGTGGCGGAGGTTCTGGGGGATCCAGAGGCTCGGGAGAAGCAGCGCAGCAGAGAGAGTCTGATCTCTGACACGGTGAAGTACGAGAGTGGCCCAGATGGTGGAGAGGAAGTGAGTATGAGCGTCGAATGGAATGGGCAGTGCTCAGGGCACACAACAGAGGAGACTGCAACAGAGCGAAGAGGGGATGGCTCGGGCTCATTAAAGCGCAGCGGCTCCTTCAGTAAACTCCGAGCCTCAATTCGCCGTAGCAGTGAGAAACTCGTCCGCAAGCTCAAAGGAGGCAGCTCACGAGAAAATGAACCCAAGAATCCTGGGAGCGAAATAATCGTCTGAGGAAGAGTCGAGATCTGAGTGCCAGTCACACTGACCTAGCGCATTGAAGCTCTGCATAGCATGTGCTGATGAAGTTGAGAGGGTTCAGTGAGGGCACGGACTGAGGCAACTTCTACACCCTTCTCCCAGCctaaactcttttttttatttacacaggaAACCCTTTACCTTTACTTGCCATTACTTTCCAGACCTAAGTAAACAAATTTATCTCGTGTTGTGTCTTTGGACAACACTAGAAATTATATGATCAACTGCTGAATAAGTGCAACTAACAATCATGCATTCTCAACCCACTCCCAGACCCAAAAGTGTGTGTACTGAAATGCATTTTGACCTGTGAACCTGCAGGTGAAACTTGGCACATTATTCAGGCTCAGGTTAGGGATTTACATATTCATTGCACTTTTGACCCAATGATTAATATTCtgtatgtcattttattttcaattagaTTTTGTCATCTCTTTGTCTAATGTGTGTGAAGGATATGGTAACATGTAACTGTGTGATTTGGATGTGTTCTTATAGTTGTGGGATATATGCTTTATTCCTGTTTGTTAATTTTCTACCcagttcattttcagtaacattaGACGTTCAGCTTCATAAGTTTGTCCTGCTTTTCCTGgactaatttattatttttttgtggtaAATTATGAACCCCACCTGTTTTAAGGTCTCTGTTTACATTCTGTAATGTTCATTACGgcattagttttttttgtttgttttttttgtatttttgttgagGTCCTCTAACCAGATATTCTTCTTTCAAATGTCAGTTATTAAGAATGTGGATCAAAGGTTTCTTAAGTACCAAGGAAAACTGCACTTCACTGGTTTCATGGAGAAGAAGTTACCAGCCTTTTCTTACAGTTGTCAGCTGAGTTTTTACTTCTTTatctgttacatttttaaataaaaatgttacacaGATTGATGTAGGTGAGTTGATGGACTGgttctatttaaatattaaattaaatgatctcatattattcatatatctgaaaaagacaaaatattttgaaaaggaTTATTGAAGAAATGTATATTGCCTCTTTTCATCAACTCAGATTGGTTAAGGGAGAGCTAAAATCAGTTACAGTAGACAGATGAATGTGCACTGTAAAATTCTTTAAACAGTCATGAAGTACGTTACATGACCAGAGAGTGACCAGATCAGGTCTCTAATTAGTGATGGAGATGGTTCACTAATTGGTAAGCCACTTACTCTTTATGATTTAatgatataaatacatttcagtgaTACCAGTCCTTTTATCCAAAGAGTGAACCATTTTGTAAGAATAAAAATGGACCACTAAAGGCAAGGTTCAACTCCACAAACATCTGTGAGGAAAATGAATAAAGTTCATGCAGGTTTGTTATACACTGCATGTACATTCTCTGCATttggctgcttctctgcatTCTGACAAAGTGCAATATTGTAgctgctttgtgtgtttgttctgtttgaCCTTATATATGACATTCTACTGACAAAAGCTGCTTGGCTTGGTGTCTTTGTTAAAtttgtgattaaaaatgaatcTATCTTCATTATTGTATGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57164 lncRNA upstream 31828 17986281 ~ 17986571 (+) True G48323
TU57144 lncRNA upstream 77077 17902052 ~ 17941322 (+) True G48305
TU57141 lncRNA upstream 120943 17896322 ~ 17897456 (+) True G48302
TU57020 lncRNA upstream 249463 17726419 ~ 17768936 (+) True G48209
TU56890 lncRNA upstream 415245 17601874 ~ 17603154 (+) True G48133
XR_004577850.1 lncRNA downstream 34750 18081617 ~ 18084799 (+) True LOC113541886
XR_003404227.2 lncRNA downstream 34750 18081617 ~ 18084799 (+) False LOC113541886
TU57367 lncRNA downstream 127433 18174300 ~ 18174499 (+) True G48478
TU57379 lncRNA downstream 174441 18221308 ~ 18221979 (+) False dlg5a
TU57387 lncRNA downstream 175201 18222068 ~ 18222547 (+) True G48494
XM_026941529.2 mRNA upstream 2619 18011815 ~ 18015780 (+) True LOC113543388
XM_026940734.2 mRNA upstream 35654 17971726 ~ 17982745 (+) True trmt61a
XM_034303031.1 mRNA upstream 35654 17971984 ~ 17982745 (+) False trmt61a
XM_026940648.2 mRNA upstream 53093 17943332 ~ 17965306 (+) False mark3a
XM_026934040.2 mRNA downstream 9259 18056126 ~ 18059166 (+) True fignl1
XM_026945478.2 mRNA downstream 93822 18140689 ~ 18149740 (+) False mocos
XM_026945456.2 mRNA downstream 93823 18140690 ~ 18149740 (+) True mocos
XM_026945470.2 mRNA downstream 93823 18140690 ~ 18149740 (+) False mocos
XM_026945464.2 mRNA downstream 93824 18140691 ~ 18149740 (+) False mocos
TU55884 other upstream 1781751 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 1945332 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 1946479 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2221195 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 3650953 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1294483 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1294483 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1294483 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1294483 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1294483 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile