RNA id: XM_026945712.2


Basic Information

Item Value
RNA id XM_026945712.2
length 1545
RNA type mRNA
GC content 0.43
exon number 9
gene id polr1c
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15024924 ~ 15029815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGAACACGGAAGTCTACAGTAGGAGGTGGGGCTGGAGGAGGAAAGCGGGCAAAATGGCGGTGCCTATGAGCAACGTGGATGAGATCCGTGACAGAGTGATTTTGGGCGAATTTGGCGTAAGAAATGTTCATTCTACAAATTTTCCTGGTAATTATCCTGGTTATGATGACTCATGGGACCTCAAGAAGTTCAAAAAGAATTTCAGGCTCGATGTTGTTCATATGGATGAGAACACGCTGGAGTTTGATATGGTGGGAATAGACGCTGCCATTGCCAACGCTTTCAGGCGGATATTACTAGCTGAGGTCCCAACTATGGCTGttgaaaaggttttcatttacaACAATACATCTATAATTCAAGATGAGATCCTAGCACATAGGCTTGGCTTGGTACCCATCAAAGCTGATCCTCGTCTTTTTGAGTACAGAAATGCTGGTGATGAGGAAGGCACAGAAATTGACACAATTCAGCTTCAGTTGAAGATCAAATGCACAAGGAATCCCAGGGCATCTAAAGATGCCTCTGACCCCAAGGAACTCTACCTCAATCACATGGtgtattcAAGGGACATGAAGTGGGAACCTATTGGAAATCAGGCTGATGTGTTTGCTGATGCTAACATTGGTCCTGTGCATGGAGACATCCTCTTGGCACAGCTTCGGCCAGGACAAGAGCTGGATATAGTTATGCACTGCGTTAAAGGAATAGGTAAGGACCATGCAAAGTTTTCCCCAGTGGCCACTGCTAGTTATAGGCTACTTCCTGAGATCACATTACTGCAGACCATTGAAGGAGAAAAAGCTGAGAGATTAAAGCGCTGCTTCTCACCTGGAGTTATTGAATTGGAGGATGTTGATGGAAAGCAAGTGGCTAAGGTGGTCAACAGTCGTCTGGATACGTGCAGCAGAGAAGTGCTTAGGCATGACGACCTAAAGAACTTGGTCAAACTTGGAAGAGTGCGGGACCATttcatatTCTCAGTGGAGTCTACTGGAATTTTACCACCTGATGTCTTGGTCAGTGAGGCAATTAATGTACTCATTGCAAAGTGCCAGAAATTTCTGACTGAGCTTGACTCAGTGACTGAAATGGAATAGCCAGAAGGATGTTGGACCACATGTACTGAAGGCAACATTAACAGGACCTCACGACCTTGAAAGTGTTGTAGGATTGGATAGCTGAAGCAGTGCATGATTAGGGAGTGTTTTCTTCCCTAATTATAAAAGCCTTGAGTCCTACAGGAAGCCTGGATGACATTAGATCCTTATCAACTAAGATTATAGTGTTAAGCTAAATGGACATGGCTACAAGAGCTAGTGTTATATTCTCATTCTTAAAACATCTGCTTTGCTCAACGTAGGCATTGCTTGGCTGGTCCTGATGAATGACTGTGAGCTTAAGCTTTATTTTTGGCACATGCCCATGTCTAGACAAAGGCATCAATGGTCTGGTCAAGCCCAGTGTTCATATTTCTCCATAAATTTTGTTTGACGTGAAACATTGTACATTGTTTGTATTAAATTTATTGACAAAATGTCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03027 RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55220 lncRNA upstream 9743 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 12935 14965906 ~ 15011989 (+) False G46638
TU55130 lncRNA upstream 51036 14972590 ~ 14973888 (+) False borcs7
TU55126 lncRNA upstream 57809 14965906 ~ 14967115 (+) True G46638
TU54849 lncRNA upstream 398451 14624473 ~ 14626473 (+) False LOC113541837
TU55286 lncRNA downstream 49998 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA downstream 51838 15081653 ~ 15084310 (+) False G46765
TU55373 lncRNA downstream 389214 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 443386 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 681322 15711137 ~ 15715524 (+) True G47043
XM_026942635.2 mRNA upstream 30854 14977725 ~ 14994070 (+) True cnnm2a
XM_026942643.2 mRNA upstream 30855 14977725 ~ 14994069 (+) False cnnm2a
XM_026943016.2 mRNA upstream 50856 14972568 ~ 14974068 (+) True borcs7
XM_026939277.2 mRNA upstream 63731 14946833 ~ 14961193 (+) True wbp1la
XM_026945446.2 mRNA upstream 88720 14910899 ~ 14936204 (+) True fbxw4
XM_026941657.2 mRNA downstream 4248 15034063 ~ 15058779 (+) False ldb1a
XM_026941697.2 mRNA downstream 4249 15034064 ~ 15058779 (+) False ldb1a
XM_026941635.2 mRNA downstream 4249 15034064 ~ 15058779 (+) False ldb1a
XM_026941626.2 mRNA downstream 4251 15034066 ~ 15058779 (+) False ldb1a
XM_026941646.2 mRNA downstream 4251 15034066 ~ 15058779 (+) False ldb1a
XR_004577898.1 other upstream 657478 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 741756 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1523878 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1991676 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2024962 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 763613 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1040899 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1040944 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1204720 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4311535 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile