RNA id: XM_026945753.2


Basic Information

Item Value
RNA id XM_026945753.2
length 1442
RNA type mRNA
GC content 0.47
exon number 9
gene id hadh
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7150285 ~ 7155500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACGTGACCACGTGACCAGGCTGACTTTTCCCCCGGTTTAGAGGAGAGTCGCTGTCATACAGTCATGGCGTTCTTCACTCACCACATCACCCGAGCTCTGAGCTCTTCTACCGTCCGAAACGCCGCCATTAAACATGTTACTGTTATCGGAGGAGGATTAATGGGCTCGGGAATCGCGCAGGTCGCGGCGGCGACTGGACATTCAGTAGTGCTGGTGGACACGTCCGAGGACATCCTGAAGAAATCCACCAAGGGTATTGAGGGCAGCCTGAAGAGAGTTGTGAAGAAGAAGTTTGCAGACAAACCCGAGGCCGGAGAGGAGTTTGTCCAGAAGGTGTTGAAGAACATTTCCACGAGCACAGACGCTGCGTCAGTGGTGCAGAGCACTGATTTGGTGGTGGAGGCCATCGTGGAGAACCTCAGAGTGAAACAGAGTCTCTTCTCTACTCTGGATAAAGTGGCACCAGAACACACCATCTTTGCCAGCAACACATCCTCTCTTCCTATTGCGGATATCGCCGTCTCTACAGCTCGCTTAGACCGGTTGGGGCTCCATTTCTTCAACCCCGTCCCTATGATGAAGCTTGTGGAGGTCGTCCAGGCTCCAGGAACAAGCCAAGAAACATTTAACGCACTCCTCGATTTCAGCAAAGCATTAGGAAAGCATCCAGTGTCATGCAAAGACACTCCAGGCTTTATTGTCAACCGGCTGCTCGTGCCTTACCTAATGGAGGCTGTGCGACTACATGAACGAGGTCACGGTTCCAAAGAGGACATCGACGTAGCCATGAAGCTCGGAGCCGGTTATCCCATGGGTCCTTTTGAGCTTTTGGACTACGTGGGATTGGACACGTCCAAATTTATCATTGACGgtTGGTATCAGATGGAGCCGGAAAACCCATTGTTTTCTCCAAGTCCGCTTCTCAACAAGCTAGTGTCCGAGGGCAAGCTGGGCAAGAAAACCGGAGAGGGTTTCTACAAGTACAAATAAGCCGAAGTGGGATGAACCTGGACTCTTCCTGGTCAGAGAACAAAAATCATTAACGCATGCAGAATGTCCAGAGAGTTGGAATCGGACTAACAGATCATTAAACAGCAATTGTgcaacagttttaaaaaaagaaagaaaagaaatagaaCAAACACTAGTGCCTTGCTGTAATGACATGTTCAGAACAGATTATTATAATTTCTGATCTTGTCAGCTTTGTATGTCAgtgctaaaattaaaaaagtaatttttttaaagagtgaaGTCTTCAAATGTGCTGTACTGACtggtttgaaaatgtaaaaatgtcacttttttagTAATTATAGATGGCGGCTTGTGTATCTTTTATACATTACACATCCATTTAAATCAGCAAGCATGCAGAAACACGCCAGCTATGCAAAGACTTGTGTCATGTGGAAGAAATAAAATGCCAGTGAGCTCAA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0070403 NAD+ binding molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49621 lncRNA upstream 133360 7016704 ~ 7016925 (+) True G41951
TU49521 lncRNA upstream 181446 6951392 ~ 6968839 (+) True G41857
TU49390 lncRNA upstream 447479 6662282 ~ 6702806 (+) True G41752
TU49280 lncRNA upstream 548122 6601912 ~ 6602163 (+) True G41654
TU49279 lncRNA upstream 551318 6598703 ~ 6598967 (+) True G41653
TU49784 lncRNA downstream 192659 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA downstream 205700 7361200 ~ 7364931 (+) True G42098
TU49923 lncRNA downstream 266591 7422091 ~ 7422296 (+) True G42208
XR_004577840.1 lncRNA downstream 317870 7473370 ~ 7475040 (+) True LOC117596850
TU50006 lncRNA downstream 469369 7624869 ~ 7630105 (+) False scoca
XM_026942935.2 mRNA upstream 1160 7142438 ~ 7149125 (+) True LOC113544242
XM_026942115.2 mRNA upstream 9375 7126787 ~ 7140910 (+) True sgms2a
XM_026942108.2 mRNA upstream 9376 7126787 ~ 7140909 (+) False sgms2a
XM_026938759.2 mRNA upstream 232630 6844872 ~ 6917655 (+) False tbck
XM_026938752.2 mRNA upstream 232630 6845465 ~ 6917655 (+) True tbck
XM_026938402.2 mRNA downstream 136221 7291721 ~ 7315462 (+) True LOC113541438
XM_034302876.1 mRNA downstream 187786 7343286 ~ 7346567 (+) True LOC113542004
XM_034301187.1 mRNA downstream 198568 7354068 ~ 7356693 (+) True LOC113541239
XM_034301211.1 mRNA downstream 201234 7356734 ~ 7358561 (+) True LOC117596353
XM_026941346.2 mRNA downstream 228572 7384072 ~ 7393247 (+) True faah2a
XR_003404319.2 other upstream 1793588 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 1808535 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3315674 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 4984501 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 5059064 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 48450 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 493698 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1310247 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1314124 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3396759 10552259 ~ 10558295 (+) True sprn

Expression Profile