RNA id: XM_026945920.2


Basic Information

Item Value
RNA id XM_026945920.2
length 2114
RNA type mRNA
GC content 0.46
exon number 14
gene id alox5a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18831551 ~ 18837797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGTAGAAAAGAGGAAATGCTTTCAGCGAGAGACTACAGTGGGTTCACTGTGGAGACACAGAAGCTTGTCCGCTTGTGTGACCAGGATGCCTTCATACACTGTGACTGTTGCCACGGGCTCTCAGTGGTTTGCTGGCACTGATGACTACATCTACCTGACCCTGGTGGGGACGGAGTGCAGCAGTGAGAGAACACTTCTGGATAAACCACTATATAATGACTTTGAACGAGGCGCGGTGGACTCATATGATGTCAAAGTGGCAGAGGACCTTGGTGACTTAGAGCTTCTGAAGATCGAGAAGAAAAAGTACTGGATGCAAGATGACTGGTATTGTAAATACATTACAGTGAAGACACCCATTGGAGATTACATTGAGTTCCCCTGTTTTCGCTGGGTAGTGGACGATAAAGAGGTGATACTTCGAGATGGCAGAGCTCGCCTGCCTCAGCATGACAAAACCAGAGTGGCAAAACAACACAGACGCAAGGAGCTGGAAAACAGACAGAAGACTTTTAGATGGAAGGAATGGCATCCTGGCTTTCCCATGAGCATTGATGCAAAAACCCATAAAGAGCTACCACGTGACATCCAGTTTGACAGTGAGAAAGGCATAGATTTCGCCCTCAACTACAGTAAAGCgATAGAGAACCTCTGTGTTAACCAGTTTATGCACATGTTCCAGTCCTCTTGGGGAGATTTTGCAGATTTTGAGCGGATATTTGTGAGGATCAAGAACACAATATCAGAGTATGTGATGCAGCACTGGAAAGAAGACTTCATGTTCGGATATCAGTTCCTAAATGGCTGTAATCCTGTCATGATCGAGAAGTGTACAAAAATACCAGATAATTTTCCAGTCACACATGAAATGGTGAAAGACTGCTTGGAAAGAGACCTCACTCTAGAAGATGAACTTAAGGCAGGAAACCTGTTCATTGCAGATTATAAGATTATGGATGACATCACGCCTAATGCTACAGATCCTTGTACCCTGCAGTATTTAGCTGCACCCATTTGCTTGCTGTACAAGAACAGTCAGAACAAAATTCTGCCAATCGCCATACAGCTGAGTCAAACCCCAGGGGAAGACAGCCCAATCTTTCTGCCTAGTGATAATGAGTATGACTGGCTGCTGGCCAAGATCTGGGTGAAATCTTCAGACTTTCATGTGCACCAGACAGTCACACACCTCCTGAGGACTCATTTGATATCAGAGGTTTTTGGCATTGCTATGTACCGACAGTTGCCTGCTGTTCATCCAGTGTATAAGTTGCTGGTGCCACATGTTCGTTTCACAATTGCCATCAATACAAAAGCACGCGAGCAACTTATCTGCGAATGTGGAATCTTTGACAAGGCTAATGGTACAGGTGGAGGTGGCCATGCAGAGCTAGTGCAGAAAGCCATGAAGACGTTCACCTATAAGTCCTTGTGCTTTCCGGAGTCCATAAAGGCTCGAGGCATGGACAGCAAGGAGGAGCTtccctactactactacagagATGATGGCAACAAAGTGTGGGAGGTAATCAAAAGTTTTGTCACAGATGTGGTGCACATATACTATGATAGTGACAAAACGGTACTGGAGGATGAGGAGATACAGGCATTCGTCAAAGATGTCTGCAGCTTTGGAATGCAGGATTTTGACTATTGTGagtttccGAAATCATTGCAGAACCGAGAGCAGCTGGTGGAGTACCTGACTGTTATAATCTTCACAGCTTCTGCACAACATGCTGCCATCAACTTTGGACAGTATGACTGGTGTTCATGGATCCCCAACGCTCCCCCCACTATGCGAAAACCCCCGCCTACAAAGAAGGGCCAGGTGGATATAGAATTCATCGTGACTAGTTTGCCTGACCGTGGTCGCTCCTGCTGGCATCTCGGAGCAGTGTGGGCTCTTAGTCAGTTCCAGGACAATGAGTTGTTCTTAGGCATGTATGCTGATGAACACTTCATTGACAAACCGGTGAAGAAAGCCATGGAGACTTTCCGGGAAAAGCTGGATGAGCTGTCCAAAGCCATCAAAAATCGCAACGAGGGGAAGAAACTCCCCTACTACTACCTGTCTCCAGACAGAATCCCAAACAGTGTTGCTGTCTGAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00461 ALOX5; arachidonate 5-lipoxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57364 lncRNA downstream 658369 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA downstream 658369 18170025 ~ 18173182 (-) True G48476
XR_004577851.1 lncRNA downstream 739938 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 746746 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 784665 18037687 ~ 18046886 (-) True G48411
TU57866 lncRNA upstream 5956 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 15716 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 52766 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 90385 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 119360 18957157 ~ 18957459 (-) True G48970
XM_026940107.2 mRNA downstream 3229 18810075 ~ 18828322 (-) False washc2c
XM_026940099.2 mRNA downstream 3229 18810075 ~ 18828322 (-) False washc2c
XM_034302912.1 mRNA downstream 3394 18810075 ~ 18828157 (-) True washc2c
XM_034303116.1 mRNA downstream 23954 18788701 ~ 18807597 (-) False zfand4
XM_034303109.1 mRNA downstream 23954 18788701 ~ 18807597 (-) False zfand4
XM_026932472.2 mRNA upstream 7355 18845152 ~ 18852107 (-) True slc25a16
XM_026937044.2 mRNA upstream 60366 18898163 ~ 18903520 (-) True si:dkey-228d14.5
XM_034302735.1 mRNA upstream 60366 18898163 ~ 18903003 (-) False si:dkey-228d14.5
XM_026932754.2 mRNA upstream 174184 19011981 ~ 19018909 (-) True mat1a
XM_026934553.2 mRNA upstream 199195 19036992 ~ 19044321 (-) True sfxn3
TU57664 other downstream 218150 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1170167 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1257129 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1257129 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1355490 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 478690 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 798041 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1520137 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1520191 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1520191 20357988 ~ 20369429 (-) False gng2

Expression Profile