RNA id: XM_034301211.1


Basic Information

Item Value
RNA id XM_034301211.1
length 1278
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC117596353
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7356734 ~ 7358561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAAACTGCTGCTGGTGTTGGGGTAGCTACTGCAGTTGCAGGAGCAAAGGAGCATCTGCGGCTGGTGTTGGTCGGCCTTCAGGGTGTGGGGAAGAGTGCAGCAGGAAACACCATCCTGGGTCGTGAAGAATTTCATTCAGACATCAGCTCCAGTGCTCTGACGCTGCAGACTGAAAGCAGGGAAGCTCTGCTATGTGGGAGACATGTGATGGTGGTGGACACTCCAGGTCTCTTCAACAGCACACTCTCAGATACAGAGATGAAGCAGGAGATGGAGAAAGCTGTGACTCTCTGCCATCCAGGACCCCACGCCTTTCTCATCATCATCCAGCTGGGACGCTTCACAGAGCAAGAGAGGAGCGTGATGGACAAGCTGGTTGAAATGTTGGGCTCAAATGTTAATCTCTACTCCATGGTGCTGTTTACTTATggagacaaactgaagaacaaaACAATAGATCAGTTTGTGAAAGAGGACAAGAATTTGATGAAACTGATTGGCAAATGTGGGGGGCATTACCATGTGTTCAATAATGCTGACACAGAAAATAAAGTTCAGGTCAGTGATTTCTTGGAGAAAACAGACACCATGATCAGGAGAAGGAAAAACAGCCATTTTATGTAAAGAGTGCAAAACATGTACAATATCCATGGGCAGCAATCCTCTACATTACTTTGCCGGCTGTAGCATTATTAGCAGTTACGATGATGTATACCAAGAAGCAAGTACCAGCAGAGTCACTACCACAGTCATCATCAGTAGAGAATGTTATTCCAAATAAGGCCACAGAGTCAGTTCCTGACCAACCTGAAGATACTCTGGAGACAAGTGCACGATTTTGGCAAATGCTACACAGGGTAGATTTCAACTGGAGAGGGCTGATTCCTATAGCTATAGGGTTAGGGGCAGGCTTTTGGATCCTGAggaaattacagaaataacacCTTCAATGAAATGATTTGAAATCTTAAACAGATAATGAGATAGTCAATAAGTGATGATGGCTCTAAATGATTACCAACATTTTCTTCTTATCAAATATTTAGTTTAATCGCACTACTTTAGAAGAGTTGGCTATTATGCTTTAATTCAGTGTGCTAAGTTTTCATTTACACTGTTTATCCTAAGGTCTAAAGGACTCATAGTTCTCATGTTTAAATGTCTATTTAATAATCAATGGCATAAAATATAAGTGAAACTGTACTGTTTACTGAATAAATTGTTGAACAAGGGATTGACATGgtgaaataaatataagttgtgtgttaaaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49621 lncRNA upstream 339809 7016704 ~ 7016925 (+) True G41951
TU49521 lncRNA upstream 387895 6951392 ~ 6968839 (+) True G41857
TU49390 lncRNA upstream 653928 6662282 ~ 6702806 (+) True G41752
TU49280 lncRNA upstream 754571 6601912 ~ 6602163 (+) True G41654
TU49279 lncRNA upstream 757767 6598703 ~ 6598967 (+) True G41653
TU49791 lncRNA downstream 2639 7361200 ~ 7364931 (+) True G42098
TU49923 lncRNA downstream 63530 7422091 ~ 7422296 (+) True G42208
XR_004577840.1 lncRNA downstream 114809 7473370 ~ 7475040 (+) True LOC117596850
TU50006 lncRNA downstream 266308 7624869 ~ 7630105 (+) False scoca
TU50015 lncRNA downstream 282374 7640935 ~ 7644922 (+) True G42295
XM_034301187.1 mRNA upstream 41 7354068 ~ 7356693 (+) True LOC113541239
XM_034302876.1 mRNA upstream 10167 7343286 ~ 7346567 (+) True LOC113542004
XM_026938402.2 mRNA upstream 41272 7291721 ~ 7315462 (+) True LOC113541438
XM_026945753.2 mRNA upstream 201234 7150285 ~ 7155500 (+) True hadh
XM_026942935.2 mRNA upstream 207609 7142438 ~ 7149125 (+) True LOC113544242
XM_026941346.2 mRNA downstream 25511 7384072 ~ 7393247 (+) True faah2a
XM_026941379.2 mRNA downstream 37864 7396425 ~ 7408116 (+) False LOC113543274
XM_026941387.2 mRNA downstream 39438 7397999 ~ 7408116 (+) True LOC113543274
XM_026941456.2 mRNA downstream 54947 7413508 ~ 7420929 (+) True LOC113543333
XM_026941437.2 mRNA downstream 261984 7620545 ~ 7630140 (+) True scoca
TU49753 other upstream 135711 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2000037 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2014984 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3522123 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 5190950 2165623 ~ 2165784 (+) True LOC113546173
XR_003404394.2 other downstream 290637 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1107186 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1111063 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3193698 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 3236013 10594574 ~ 10608704 (+) False LOC113543929

Expression Profile