RNA id: XM_034301269.1


Basic Information

Item Value
RNA id XM_034301269.1
length 2233
RNA type mRNA
GC content 0.47
exon number 11
gene id prkcha
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33329005 ~ 33336795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTACTTAAAGTGTGATGGATCCTGTGCTctttctatgtgtgtgttacaggggtGTTTTTGGAAAACAGGGATACCAGTGTCAAGTGTGTACTTGCGTCGTCCACAAACGGTGCCATCAGCTTGTCGTCACTGTGTGTCCACGCATGAAGAAACCTGCCAAAGAACagacgGTGAATCAGGGTTTCAGCATTAACGTTCCCCACAGGTTCGATGTGCATAATTATAAGGTTCCTACGTTCTGTGATCACTGTGGATCTTTACTGTGGGGCCTCATGAAGCAGGGACTGCACTGTAGCAtctGTAAGATGAACGTTCATATCCGCTGTAAGGGCAACGTCGCACCGAACTGTGGCGTGAACAACGTGGAGCTTGCTAACAAATTAGCGGAGATGGGACTTCAGCCGGGAGGGACGATAAAGCGCAACacactgaaccCATCTGCCCTAGAATCCTCCTCTCATCGTGTCAGTGTGAAGAAAGGTGTGTCTCCACAAGAGAATAAAGGTCGAACCTTGCACATCGAGGACTTTACATTCCTACAGGTTCTTGGCAAAGGCAGCTTCGGcaaggtgatgcTGGCCCGCCTGAACGACACCGATTGTGTATTCGCCGTGAAGGTTTTGAAGAAGGACGTGATTCTGCAAGATGATGATGTTGAGTGCACGCTGACGGAGAAACGGGTGCTGACGCTCGCACACTCACACCCCTACCTCACACACCTGTACTGCTGCTTCCAGAACCTGGAACGCCTGTTCTTCGTGATGGAGTTTGTGAACGGCGGCGATCTCATGTTCCACATTCAGAAGTCGAGGAAGTTTGAGGAGAACCGAGCTCGATTTTACGCAGCCGAGATCACCTCTGCGCTCATCTTCCTCCACGGCAAGGGCATCATAtacagggaTCTGAAGCTGGATAACGTGCTGTTGGATCGGGATGGTCACTGTAAGCTGGCGGATTTTGGGATGTGTAAAGAGGGGATGTTTGAAGGAGCCGCTACTGGAACCTTCTGTGGAACTCCAGATTACATCGCTCCCGAGatcctGCAGGAGATGCTGTACGGGCCGTCGGTTGATTGGTGGGCTCTGGGCGTGCTCCTTTACGAGATGCTctcaggccacgccccctttgAGGCAGAGAATGAGGATGATTTGTTCGAGTGCATTCTGAATGAGGAAATCGTTTACGCGTCGTGGTTGAGCGCCGAAGCCGTGGACGTCCTTAAagctCTCCTGACGAAGAATCCGACTCGTCGCTTGGGCTGCGTGGCGGCGAGCGGTGGAGAAAACGCCGTCATGACGCACGTGTTCTTCAGCACCATCGACTGGGACAAACTGAACCGGCGAGAGATCGAGCCTCCGTTTAAACCCCAAATCAAAACCGGTGAGGACGTGAACAATTTCGACCCCGACTTCACGAACGAAGACGCAATTCTCACTCCCATCGAGGAAGCTGTGATCCCGCAGATCAACCAGGACGAGTTCCAAGATTTCTCGTTCACCTCGGAGGAGATGCTGGAGTACTGCGTGTagtaaagaaaaggaaaaaaaaaacagtaaaagaaaaacaaagtgatGCCGCAGGAGGAAGACGACGACGTCGGTTGAGTTGGTTGAATCGTGACATCATACTAATGAATATTTATTGAACTGGCGAAAGCTAAGCTGTGTTGGGAGACATCATTGTGAACCGTGACTGTTTTGTCCAAAGTTAGCAAACGGTACGATTTTACCAAGAAGAACGTGGGACTCGTCAGAGGCGAGATGTGATGGAGATGTGATGGAGATGTGATGGAGATGTGATGGAGATGTGATGGCatcagattttatatatttttttctgcagcaAGTCAGAAGTTTTTCCTGGACACTTTTTTTAACAATCGTAGCTGATTTATTGCAGCAAGCCTAAAAAATGGATGCATTAACATCGTACACAAAGGACAATGACATCATATTCCTTAAACCGCGACATTTTattgaacaaaaacaaagtatTCAAACTCTTACCAAAGTTAGTGAAGACTATCGTGACTATCGCTTTCGTACTAAACTCTGgaggtgaatttttttaaatgaatgagagatgagaatatttttttaagtcattGCGTCAGTGGAAATGATTAGTATTACAAGCATTTTATTGTAGCTAAAGTTAGCTTTTATTGTATGAGAGAAAATATGATGGAAAGGATCAAATTCCAGTTATTTCTCAGCaccaaagcaaaaaaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K13419 pknK; serine/threonine-protein kinase PknK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67471 lncRNA downstream 23487 33303570 ~ 33305518 (-) True G57292
TU67469 lncRNA downstream 30692 33296819 ~ 33298313 (-) True G57290
TU67449 lncRNA downstream 71213 33257229 ~ 33257792 (-) True G57275
TU67441 lncRNA downstream 93293 33234666 ~ 33235712 (-) True G57267
TU67378 lncRNA downstream 260320 33067534 ~ 33068685 (-) True G57215
TU67481 lncRNA upstream 26809 33363604 ~ 33364547 (-) True G57300
TU67483 lncRNA upstream 28262 33365057 ~ 33410771 (-) True G57302
TU67396 lncRNA upstream 33065 33369860 ~ 33375501 (-) True G57224
TU67405 lncRNA upstream 33980 33370775 ~ 33406126 (-) True G57232
TU67395 lncRNA upstream 73753 33410548 ~ 33411453 (-) True G57223
XM_026939217.2 mRNA downstream 7342 33306312 ~ 33321663 (-) True hif1aa
XM_026939447.2 mRNA downstream 35662 33286801 ~ 33293343 (-) True LOC113542112
XM_026939055.2 mRNA downstream 224762 33095656 ~ 33104243 (-) True osr1
XM_034302726.1 mRNA downstream 226712 33095656 ~ 33102293 (-) False osr1
XM_026939056.2 mRNA downstream 460650 32865245 ~ 32868355 (-) True rdh14a
XM_034302705.1 mRNA upstream 608 33337403 ~ 33344836 (-) True slc38a6
XM_026939307.2 mRNA upstream 20235 33357030 ~ 33361865 (-) True dhrs7
XM_034301294.1 mRNA upstream 48319 33385114 ~ 33387819 (-) False six1a
XM_026939310.2 mRNA upstream 48319 33385114 ~ 33387819 (-) True six1a
XM_026939485.2 mRNA upstream 52698 33389493 ~ 33403724 (-) True six4a
TU67373 other downstream 229433 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 600264 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 667443 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 939861 32374336 ~ 32389144 (-) False ndufaf1
TU67383 other upstream 3427 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 86874 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 118427 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 193132 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 228741 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile