RNA id: XM_034301788.1


Basic Information

Item Value
RNA id XM_034301788.1
length 2010
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC117596472
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19921155 ~ 19934237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctccTGAGACCCAACAATTCATTTTTGTCCTCCGTGGGGGACAGGAGTCTGATACCTCTAAGTCAAGCACAATTAATGCAATCTTTTTGGGTCCTACTGTGCTGTCAAGAGGACATCCTGGGCTTTCTAGTGATGCCACAGTTGTGGGGGTGTGGCTAACAGAGCACACAGACTTTCTTTTCAAAATGGCAGCCATTGCAGCTTCCACATTTTATGGCACCAAGGGAGTTTCAACCCTGTTGTGGAGGAGAACACTGTGCAAGACAATGCTGGCCACAACCACCAAGACTGGAGGCCCTCTGATTACTTCAAACAGTACATAGATAACCAGGTTTTGAGaaaatgtcagaacacacaaaccAGCGGGAGGTGCTCATCTCTGGAGGCAGCCTTAAAACCACTCCAGAGGAGCTGAAAACCTTCTTTGGCATATCTATGTACATGGCATGCCTCGGATACCCTAGGATCCGGATGTACTGGGCAGCGAAGACGAGGGTCCCAGTCATAGCCAATTCAATGAGTCGAGACAGATTCTTCAAGATTAGGCAGTCCATCAAACTCACAAATGATCTTGATGTCTCtgcagaggagaaaaagaatgatCCCCTCTGGAAGGTAAGACCTCTCTTAAACAGAGTGCAACAAGGCTGCCTCAATCTGCCAAGACCAGGGAAGGCCTGTGTAGATGAGCAGATGATACCCTTCACAGGTCGGTGTCCTGTACGGCAGTTTGTGCCAGGGAAACCAAATCCCACAGGACTGAAAGCATTTGTGCTTGCCAGTCCCAATGGTCTGGTGCTGGATTTTGAAGTTTACAAGGGCCGGAATACGTTCACTGACCAGCAGCTGGGAATCGGAGGGAATGCAGTCGCTCGGATGGCACAGTCTCTTCCAAGAGGAACACACCTGTACTTTGACAGATATTTCACTTCTATCAAAGTACTGGATATGTTGAAAGCAAATGGTCTCCTGGGAACAGGGACCATTATGAAAAATAGAATCCCTGCACTGTGCAAGTCAAAGATGTCAGATGACaccaaactaaaaaaacaaggaaaaggtGCATCCGAAATGGTTGTCAGAAAACCATTAGAGGTTGCAGTGACAAAGTGGCAGGACAATAAGGCAATTCTGATGGCCTCCAGTGTCCATGGGATAGAGCCCCAGGACAGCTGCCTGAGATGGTCAGCAAAAGAGAAGTGCCATGTAACTGTGCCTAGACCTGCTGTTGTGGCTGAGTACAACAAAAATATGGGTGGAGTTGATTTGTGCGACCGCATGATCAGCTTTTACCCAATGTCAAGCCGCACAAGAAAATGGACCATCCGTACGGTCCTGCATTTCTTTGACCTGGCGGCCACAAACAGCTGGATCGAGTACAGGTCAGACCACCAGGTCTCTGGGAGACCAGAGAAGGAGAGACTTCAGTATTTTGACTTCAAGCTGCTGCTGGCTGAAGAAATGATTGCTCAGGCACAGAGTAGTCAAGGTCAACAGGTTCACAAGATGGCCAGTGATGATGAGATGAGCACTGATGATGAAGAGTACATTCCAGCCAAGAAGAAGAGGCCTGTTGAACCACAGCCCAagtCCGGGGCTCCAAACTGTTTAGCGGGAGTTGGTGAGTCCAGCAGTTTCACACAGAGGAGCACCCGAGCAGAGTCAGGAGCTCACATCAGGCAGCCCGCGCACCTCCGCCACATTCCCCGCCGGTTAGTGGGACGAGGTGGACTGTGTACTAACTGCGGCTTTCTGCTCAGCTCACACAGCCACACCGGGCGGACAGACGAGCTGAAGTTTATCTGGACTGCCCCGATAGAGTTTCAGACATGCCCGCAGAGAGGAGTGGGGACTGAAGCTGTGCAGGTCAGGTTCCGGTGGCTCAGGTGCTGCGCGCGCTCCGCGTCAGCGCACTGTGAGGAGACGGAGCCCGCGTACCTGCgcgtctctctccctccattcaCATTCACGCCTTCAGTGATGGAACAGCGGAGTTGTGGATTTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58299 lncRNA upstream 303838 19614717 ~ 19617317 (+) False G49316
TU58301 lncRNA upstream 303838 19614717 ~ 19617317 (+) False G49316
TU58302 lncRNA upstream 303838 19614717 ~ 19617317 (+) False G49316
TU58303 lncRNA upstream 303838 19614717 ~ 19617317 (+) True G49316
TU58192 lncRNA upstream 520272 19400651 ~ 19400883 (+) True G49214
TU58541 lncRNA downstream 38350 19972587 ~ 19999686 (+) True G49518
TU58721 lncRNA downstream 186811 20121048 ~ 20183193 (+) True G49630
TU58738 lncRNA downstream 221664 20155901 ~ 20191144 (+) True G49643
TU58889 lncRNA downstream 458130 20392367 ~ 20392587 (+) False pprc1
TU59001 lncRNA downstream 589579 20523816 ~ 20524049 (+) True G49853
XM_026933336.2 mRNA upstream 134584 19774747 ~ 19786571 (+) True ky
XM_026933276.2 mRNA upstream 316968 19516321 ~ 19604187 (+) True gfra4a
XM_026933896.2 mRNA upstream 494834 19412671 ~ 19426321 (+) True ap5s1
XM_026945763.2 mRNA upstream 511064 19402932 ~ 19410091 (+) True cdc25b
XM_026945771.2 mRNA upstream 511064 19402935 ~ 19410091 (+) False cdc25b
XM_034302745.1 mRNA downstream 3970 19938207 ~ 19967085 (+) False fgfr3
XM_034303067.1 mRNA downstream 108472 20042709 ~ 20064115 (+) False nsd2
XM_026944793.2 mRNA downstream 108475 20042712 ~ 20064115 (+) False nsd2
XM_026944785.2 mRNA downstream 108887 20043124 ~ 20064115 (+) False nsd2
XM_034303066.1 mRNA downstream 108887 20043124 ~ 20064115 (+) False nsd2
XR_003403773.2 other upstream 565057 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 640736 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 1071213 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 2087170 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2850091 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 3179948 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile