RNA id: XM_034301822.1


Basic Information

Item Value
RNA id XM_034301822.1
length 648
RNA type mRNA
GC content 0.50
exon number 7
gene id stpg4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21562717 ~ 21568242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAACAGTTACGGGCGAAAGGAAGGTGTCTCTTTCCTGCCATGACAAAGACCCCCGGTGCTGCGGAAAGAGTTGGAGCCATGACAGGAAAAAGGCACAGCAAGAATACCCCATTCCTTGGCAGTTGCCACATTCATGATTTCATAGAGGAGGCAAGCCTCAATCCTGTGAGAATGACCTATGAATTTAGGGACACAGGCCGTAACAGCCGGATTGTGTGTATGCGGAGTGGGACCATGCTCCTGCCAGGAACTTACAGCTTCACTGACTAGGCTTACAGCTTCACTGACTGTACTCAAGAAGCTCTCCGACATCGAGCATCCTACTCCTTTAAAAGCTGCCCAAGACCCGAAAACTACACCCCGGGCCTCCGGGATAAAGACATACACCTCTCTCCATGACATTACGATGTGACTGAGAAGCCTGTCCCCAAATTACCTTGCAAGCATGTTATGTTCCGTTCAGCCGTGCAACACCTTATCTTCCTTCCTAAGACTCCTGGACCAGGCACATATGGGCCCTCGTGGCGGATCAGTCCTTGCTTTGCCACCAAGGACAACATGGGCCGCATCCATGGCCTTTTCTAccataatgtattttattgctCTGCTATGCCTCACAGCTATCTCAGTTATGCAGCGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59860 lncRNA downstream 44639 21517815 ~ 21518078 (-) True G50626
TU59858 lncRNA downstream 47075 21515152 ~ 21515642 (-) True G50624
TU59853 lncRNA downstream 49895 21512605 ~ 21512822 (-) True G50619
TU59831 lncRNA downstream 140588 21387743 ~ 21422129 (-) True prkceb
TU59644 lncRNA downstream 177220 21346142 ~ 21385497 (-) True G50433
TU59884 lncRNA upstream 38186 21606428 ~ 21610897 (-) True G50647
TU59895 lncRNA upstream 91416 21659658 ~ 21737394 (-) True G50656
XR_004577805.1 lncRNA upstream 199572 21767814 ~ 21786645 (-) True LOC117596829
TU60045 lncRNA upstream 313644 21881886 ~ 21882106 (-) True G50802
XR_003404488.2 lncRNA upstream 325292 21893534 ~ 21899039 (-) False LOC113544235
XM_034302943.1 mRNA downstream 35940 21522208 ~ 21526777 (-) False mcfd2
XM_034302941.1 mRNA downstream 35962 21522208 ~ 21526755 (-) False mcfd2
XM_026934302.2 mRNA downstream 35995 21522208 ~ 21526722 (-) True mcfd2
XM_026934294.2 mRNA downstream 36005 21522208 ~ 21526712 (-) False mcfd2
XM_034302942.1 mRNA downstream 36033 21522208 ~ 21526684 (-) False mcfd2
XM_026935733.2 mRNA upstream 1214 21569456 ~ 21574081 (-) True calm2a
XM_026935721.2 mRNA upstream 9621 21577863 ~ 21602259 (-) False si:ch73-105b23.6
XM_026935712.2 mRNA upstream 9621 21577863 ~ 21602259 (-) True si:ch73-105b23.6
XM_034303051.1 mRNA upstream 43421 21611663 ~ 21645512 (-) True plekhh2
XM_034303052.1 mRNA upstream 43421 21611663 ~ 21645498 (-) False plekhh2
TU58946 other downstream 1193288 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 1193620 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 1193620 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1895056 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 2242984 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 43532 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 327942 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 381613 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 467043 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1206113 22774355 ~ 22788783 (-) False znf318

Expression Profile