Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034301900.1 |
| length | 2169 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | fgf8a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 14898822 ~ 14904713 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0021555 | midbrain-hindbrain boundary morphogenesis | biological_process |
| GO:0046850 | regulation of bone remodeling | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0021571 | rhombomere 5 development | biological_process |
| GO:0021572 | rhombomere 6 development | biological_process |
| GO:0021588 | cerebellum formation | biological_process |
| GO:0055011 | atrial cardiac muscle cell differentiation | biological_process |
| GO:0055012 | ventricular cardiac muscle cell differentiation | biological_process |
| GO:0030177 | positive regulation of Wnt signaling pathway | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0003208 | cardiac ventricle morphogenesis | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0048339 | paraxial mesoderm development | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0048665 | neuron fate specification | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0030878 | thyroid gland development | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0060037 | pharyngeal system development | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0048705 | skeletal system morphogenesis | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005104 | fibroblast growth factor receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404224.2 | lncRNA | upstream | 272332 | 14617616 ~ 14626490 (+) | True | LOC113541837 |
| TU54849 | lncRNA | upstream | 272349 | 14624473 ~ 14626473 (+) | False | LOC113541837 |
| TU54851 | lncRNA | upstream | 272450 | 14617654 ~ 14626372 (+) | False | LOC113541837 |
| TU54850 | lncRNA | upstream | 272450 | 14624473 ~ 14626372 (+) | False | LOC113541837 |
| XR_004577856.1 | lncRNA | upstream | 272596 | 14617608 ~ 14626226 (+) | False | LOC113541837 |
| TU55126 | lncRNA | downstream | 61193 | 14965906 ~ 14967115 (+) | True | G46638 |
| TU55127 | lncRNA | downstream | 61193 | 14965906 ~ 15011989 (+) | False | G46638 |
| TU55130 | lncRNA | downstream | 67877 | 14972590 ~ 14973888 (+) | False | borcs7 |
| TU55220 | lncRNA | downstream | 109410 | 15014123 ~ 15015181 (+) | True | G46713 |
| TU55286 | lncRNA | downstream | 175100 | 15079813 ~ 15084310 (+) | True | G46765 |
| XM_026943359.2 | mRNA | upstream | 27723 | 14857929 ~ 14871099 (+) | True | slc2a15a |
| XM_034302783.1 | mRNA | upstream | 225823 | 14658756 ~ 14672999 (+) | True | b3gat2 |
| XM_026936868.2 | mRNA | upstream | 225823 | 14658756 ~ 14672999 (+) | False | b3gat2 |
| XM_026940185.2 | mRNA | upstream | 286852 | 14596077 ~ 14611970 (+) | False | asrgl1 |
| XM_026945446.2 | mRNA | downstream | 6186 | 14910899 ~ 14936204 (+) | True | fbxw4 |
| XM_026939277.2 | mRNA | downstream | 42120 | 14946833 ~ 14961193 (+) | True | wbp1la |
| XM_026943016.2 | mRNA | downstream | 67855 | 14972568 ~ 14974068 (+) | True | borcs7 |
| XM_026942635.2 | mRNA | downstream | 73012 | 14977725 ~ 14994070 (+) | True | cnnm2a |
| XM_026942643.2 | mRNA | downstream | 73012 | 14977725 ~ 14994069 (+) | False | cnnm2a |
| XR_004577898.1 | other | upstream | 531376 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003404567.2 | other | upstream | 615654 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| TU54033 | other | upstream | 1397776 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 1865574 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 1898860 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU55629 | other | downstream | 888715 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 1166001 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 1166046 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55884 | other | downstream | 1329822 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003403773.2 | other | downstream | 4436637 | 19341350 ~ 19356098 (+) | True | sfxn5a |
