RNA id: XM_034301949.1


Basic Information

Item Value
RNA id XM_034301949.1
length 2764
RNA type mRNA
GC content 0.43
exon number 13
gene id ptpn20
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16323553 ~ 16358384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTAGTGTTGCTCACCTTTCAGAGCATTACGCCAGTCAGCACATCTCCTCCTGGGATGGCAGCAGAGGAGGGAGGTTACCtTAAACTCATGGCTGAAAATGCTGAAGGATTTGGGCCAATGCCCTCTGTAACCTCTCAGCAGGAGAGCTGCATTCTTCAGCTGGAGTTTACTAAACCGGAGAGAGGTGGGTTAGGCTTTTCTCTGGTAGGTGGAGTCAATGGCAGCAGTCTGCAAATAAAGGACATCTGCTGTGGGGGCATGGCTGAGCAAGATGGCCGTCTGCGTGTGGGAGACATCCTTCTGGAGGTGAATGGTGTGATCGTGTCAGGATTGAGCCACATTAAGGTGGTGGATATTCTGAGGAGAGCAGAGGGGACAGTTCAGCTGACTGTATACAGAGACGCTTTCCCCATCACTTCCTGCACTAGCTCTAGTTCCTATACTGAAGATCCTCAAGAACACAACACTAAAGGAGTAAGCTCACTTCTAGAGGTTCAGGAGGATCATTTGTCTTTTCAGACATCCGGTTGTCCTGGAGTAAAGATGGAATCTGAGCAGGATAGTGGAAACTGTACACCTACCTTTCAGGGCTGTTGCCCAGCTCTGAGTGTCACAGATATGCTACAGAGCAGGACAGACTCTCAAAAGCAGAATCTAGAAAATTCTGGCAAAATCATGGAGAAAAATTACACCGACAGCTGGAGCagtgacgatgatgatgatgatgatgatgatgatgatgacactTCTCAGCATTCCTCtacagaaacaacacacacagGTCCGCCTATTGTGTCAGAGGAGGAACTGACCAGACTTGCCCTGATCAGCCCACCTATGAATGGCCAGTACTCAGGGTCCAGACTCAAAAGTCTTATTCAGAATCTTCAGAATCAACTGGATCAGCATGACCTTGTCAAAGAGTTTATGGCATTAGGGCATCTGACACCCTCAGATAGCTGCCTGGTTGGAAAAGCACCAGAGAACCGAGAGAAGAACCGATACAGAGAAATCCTGCCCTATGATAAGACACGAGTCCCTGTGGGAGAGAAACAGGACTACATTAATGCCAGCTACATCCGGATGAAGGTGGGCCCAGATGAGTTTTTCTACATCTCATCACAGGGACCTCTGCCCAACACTCAGGACTGCTTCTGGCAGATGGTGTGGGAGAACAAGTCTGACATCATTGCCATGATGACTCGGGAAGTGGAGCGCGGCAGAATCAAATGCCACAAGTACTGGCCTGAGAAACTTGATGTTCCCATAGAAACTAGCCACTACCAACTGATCCTGAAGAACTACCAGAAATTGGACTACTTCCACATCAAGGTTATCAAGATGATAGAGAAAGAGACTGGAGCCACACACTTTGTGAAGCACCTGAAGTTCACCACATGGCCGGACCACAGCACACCTGGCTCATCCAAGCAGCTAGTGCACTTTATCCGATACATGCGTGCAGTACACTTGAGCGGGCCCATCACTGTGCACTGCAGCGCAGGCATAGGCCGAGCTGGTGTCCTCATCTGTATCGACGTCATCCTCGGCCTCATAGAGAGGGAccacactATTAATGTGAGTGAGATTGTGAGGGAGATGCGGCTCCAGCGCCATGGGATGATTCAAACCAAGGAACAGTATGTCTTCTGTTACAAAGTGTGGCTGGACGTGTTGCAGAGCATCTCCCTTCTTCATGGCAACCAGTGGCAATCAGAAACCCCcttgtgaatgagtgaatgagttcTGGCTTTTTTCCACACTAAGTTATTCCACAGTTTCCTCAGTGGGGCGACAGCTCTCATCTGTTTGAACGGTGTTGAAATACTGTTATATGAAGTTAATCATGTGCACTGAGTTTGAGTTTCAGTGCTGTTCTGATCATTTAGTATTAAATATATGGCACAGGAAGCACCCTAGACATTTTCATCAACTGTGTTATGACCTTGTATGACTCGATTTATATCCTCACCAACCACGTATAACTCAAAGCACAGATTTCCTAGCCATCAAAGGCCCTCTGTTATTTTGCCTTGAATGTGTAGTCAGGTACAATCTACtaaatatatggaaatgtgtcttttaatatgtaattatacaaacatgtttaattaattgtcattattgttattactattatttagaCAAGATTTACGCTGCACAATATCATGACAACAGCGACATAAGCAACAGCAACATACGCAAACAACCGATTGATATTTCATGTATGATTatgaaaaattcaaaataactAGAAGTCATTATTATACTTTTCTTAGACATGGCTTAATCATTCTTCAGagctatttttacttttaagaGCTAAAAATACATTGAGTAAAGTGCCTTTTAATTTGTCCTGTTGAGCAGGTTTCTCAGTTGTCTCTCTCACTGAAGTAAACTAATTTTGGCTGCAAGCTGCCAGctgacagaaataaaagaaaacaaacaaacaaacagttaaCCCAAAGAAGAGTGGGTGAATATATGAGCTTAGCAACTAGAGCCTCCTTAATAGCATTTGTAGATTTCCAAACCTCAGCAGCAGGCATTAAATAATGCCATTAATTCCAACATTTTTCCTCATGATAATCTTTTTACTGTATAGTTTCTGTTGTTTCAGTGGTGCACTTACGAtcgacttaaaaaaaaaaagacaaaagaaagatgGTGGTCTTTTCAGTtaagattttttgtttgtttgtttggtcagAACTATATTGAAAATAGTTGACATAAGGTAAAATCATGTATAAATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55957 lncRNA upstream 39769 16306468 ~ 16308843 (+) False arhgap22
TU55863 lncRNA upstream 145088 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA upstream 145088 16193416 ~ 16203524 (+) False G47265
TU55827 lncRNA upstream 214610 16124666 ~ 16134002 (+) True cxcl12a
TU55821 lncRNA upstream 244562 16103836 ~ 16104050 (+) True G47224
TU56057 lncRNA downstream 36621 16395005 ~ 16397038 (+) True G47406
XR_004577907.1 lncRNA downstream 83678 16442062 ~ 16451765 (+) True LOC117596920
TU56095 lncRNA downstream 100861 16459245 ~ 16459911 (+) True G47431
TU56133 lncRNA downstream 107588 16465972 ~ 16467346 (+) False marveld1
XR_004577499.1 lncRNA downstream 133934 16492318 ~ 16531380 (+) True LOC117596359
XM_034302718.1 mRNA upstream 39714 16285122 ~ 16308898 (+) False arhgap22
XM_026945434.2 mRNA upstream 39714 16296461 ~ 16308898 (+) True arhgap22
XM_026945426.2 mRNA upstream 40365 16286839 ~ 16308247 (+) False arhgap22
XM_026941903.2 mRNA upstream 69022 16271297 ~ 16279590 (+) True si:ch211-223a10.1
XM_026935874.2 mRNA upstream 111070 16234514 ~ 16237542 (+) True lrrc18a
XM_026933289.2 mRNA downstream 29607 16387991 ~ 16393038 (+) True gdf10a
XM_026938843.2 mRNA downstream 40171 16398555 ~ 16422200 (+) True antxr1d
XM_026942625.2 mRNA downstream 98034 16456418 ~ 16457819 (+) True mettl18
XM_026932698.2 mRNA downstream 107555 16465939 ~ 16467350 (+) True marveld1
XM_026932497.2 mRNA downstream 317736 16676120 ~ 16687280 (+) False golga7bb
TU55884 other upstream 111964 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 275545 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 276692 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 551408 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1981166 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 2982966 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 2982966 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 2982966 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 2982966 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 2982966 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile