RNA id: XM_034302025.1


Basic Information

Item Value
RNA id XM_034302025.1
length 4219
RNA type mRNA
GC content 0.48
exon number 12
gene id papss1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6718851 ~ 6748064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcctgtgacGTGGCGCAAACGTGTGACGCCTGCTTGCTGCTGAAGCTGGTGTTGGCCGTCCATTACCCAGCCGGCTCGGAGAGACATTTTATTTTCGTGCAGTTTGCTCAGTGGCTGATATGGAGACTTCTGCAACCTCGCACAAGAAGCAGAAACTGAGCAACGCGATTCAGAACTGGGGGATGCAACGAGCTACTAACGTGACCTACCAAGCTCATCATGTGAGCCGAAACAAACGTGGACAAGCCGTCGGGACAAGAGGAGGCTTCCGGGGATGCACCGTGTGGCTCACAGGTCTGTCTGGAGCGGGCAAGACGACGGTGAGCATGGCTCTGGAGGAGCACCTGGTGTGTCACGGTATCCCCTGCTACACTCTGGATGGCGACAACATCAGACAGGGCCTGAACAAAAACCTGGGCTTCAGCCCTGAAGACCGAGAGGAGAACATCCGCCGTATAGCCGAGGTGGCCAAGCTGTTCGCCGACGCCGGTCTTGTGTGCATCGCCAGCTTCATCTCCCCGTACAGCAGGGACCGCCTGAACGCAAGAAAGATTCACGAAGCAGCGGGCCTCCCATTCTTTGAAGTTTTTGTGGATGCACCACTGGATGTGTGCGAGCAAAGAGACGTGAAGGGCCTTTACAAGAGAGCCAGAGCTGGAGAGATCAGAGGGTTCACAGGAATCGACTCTGAGTACGAGAAGCCTGAGGCTCCTGAGCTGGTGCTGAAGACTGACTCCTGCAGTGTGAACGAGTGCATCCAGCAGCTGCTCGATCTTCTGCAGGAGAGAGACATTGTACCTGTAGACGCTTCTTATGAGGTGAAGGAGCTCTACGTGCCTGAGAACAAGCTGGACTTGGCTAAGGCTGATGCAGAGACTCTGCCTGCTATTGAGATCggaaagGTGGACATGCAGTGGGTTCAGGTGCTGGCTGAGGGCTGGGCCACTCCGCTCAACGGCTtcatgagagagagggagtacCTCCAGTGCCTGCATTTTGACTGCCTGCTCGACGGAGGAGTTATTAACTTGTCCGTGCCGGTGGTCCTGCCCGTCTCTGGCGCAGACAAGGAGCGTCTAGACGGCTGCACTGCGGTGGCGCTGGTCTACAGCGGGCGGCGCGTGGCCATCCTGCGCAACCCCGAGTTCTACGAGCACCGCAAGGAGGAGCGCTGTGCCCGCCAGTGGGGCACCACCTGCAAGGACCACCCCTATATCAAGATGGTGATGGAGAGTGGTGACTGGCTGGTGGGAGGAGATCTGCAGGTGCTGGACCGAATCTACTGGAACGATGGCCTGGACACCTACCGCCTCACCCCCAATGAACTCAAACAGAGGTTTAAAGAACTGAACGCAGATGCAGTATTTGCGTTCCAGCTGAGGAACCCAGTCCATAACGGTCACGCGTTGCTGATGCAGGACACGCGCAGACGCCTGATGGATCGTGGCTATCGCCGACCCGTGCTGCTGCTGCACCCACTGGGCGGCTGGACCAAAGACGATGACGTGCCGCTGCCATGGCGCATGAGGCAGCATGCCGCTGTGCTCGAGGAGGGCCTGCTCGACCCCGCCTCCACCGTGGTGGCCATCTTCCCCTCACCCATGATGTACGCCGGACCCACCGAGGTGCAATGGCACTGCAGAGCCCGAATGGTAGCCGGTGCCAACTTCTATATCGTAGGCCGAGACCCAGCTGGCATGCCTCACCCAGACACAGGCAAGGACCTGTACGACCCTACTCACGGAGCCAAGGTCCTTACAATGGCACCCGGCCTCATCTCTCTGGAGATTGTGCCCTTCAGAGTGGCGGCCTACAACAAAGTCAAGAAGGCCATGGACTTTTATGAGCCCAAAAACCACCAGGACTACGACTTCATTTCAGGCACGCGCATGAGGAAGATGGCACGAGAGGGCGAGAACCCGCCGGACGGCTTCATGGCCCCGAAAGCCTGGACTGTGCTGAAGGAGTACTATAAATCCCTGGAGAAGGTGTAAGTCATTGCCTGGGTGGAGAGAGGAGGGCTGACGGTGGTTCTGTTACAGtcaaaaggaaggaaaagaagttGCAAGTAGGGGGGAGAAACATGGTCAAGCACGGGGACCATTCAAACCTGTCCCAGCTTTGCATATGGAAGTGGTGTAATGAATATTATCTTGTTGCTTACAACACACATCTCCGGTTCTTTAAgttactgtctgtttttttttgttttgtttttttaaactgttcttAGATGGATATGTCTTTTTATGCCTAACTTATTTACTCCACAAGGAAAACTGTtgcattttaaaagcatttttaaatggtttcaTGTGAAGACCTtggtcaaagaaaaaaaaaacagttcactAATATTAAGTTGTTATATAGTTAAACATCGAAGTGTAAATGTTGTGCTCCAAATGATATGAGTCCTAATTTTCACAGCAATTTTGGTATTACTGtaacaaaacacattatttaactCATTATTTAAACTTGAATTGCAGATTTCCCCTGTCTGAGCCTGTCAGGATGTAAACATcaaaaattaaagaacaatacgTTATGTCTTAAGAATAATCAGCCATTTTGCCTTAATATACTACCTTTGATCTGAGGTAGGGATGCATCGCTACCAAAGTGTAGACCCTGGCGTGCAAGCATGTCTCAGTGTTCACAGAAATGATGTGCTCTCATGTGCAAACGTTTTTCTACTTGCTTCCTTCAGTACTCCACACCCGTGAATACCTCTGTGTGCGTGCAATTCGCGGCACTTTGGACCCATTTTTAATGACCGTACTCGCTGATATTGCTCTGTGAGATCAGGCCGACCGTCCTCGCTCTCTGTATTAAAGATACGGTTTAAACACCAGGAGATGATTTAGCAAGTCAGTTGTATTTTTGGAAGCATCTGTAACTATAGTTCTTCCTCTTTCTAtattcacagagcacagtttgcagtctgctttgctttgattgccgtaattaatcatgaaatacttCCTGTCTTCTGTTCATTAGCGTTACAACATACACTAGGATTACGTCACCTAGTATCATATGTTGGTATCGGAGCATTTTACAAGTAAATGAGAACAGACACCTGATACCAGTATCGGTAACGATGCATCCCTAATCTGAGGTAGTTAAACAGATTAGGTCAAAACGGTTTCCTGAAAAACGTCCACTGCCAATCTTACTTTCTTTAGGTTATTTGTCATATGACCTCATCAGAGTACAGATGAGGTTTGGTTATTTGCAACCTAACTGTATGTTCTTTAGTGTTAAGCACTATACAGCCAAGTccagtttgtggacacctgaccattacgcccatatgtgctttttgaacatcccattcccgagttagttcccctttgcttttataataatgtccactcttctgggaaggctttccactagattttggaatgtggcggTGGGGATTTGTGCATTAGTGAGGGCAGGTGAGGAGgactggggtgcagtcagtgttccagttcatgccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttggcacaccatctCTTCATGGagttcgctttgtgcacaggggcattgtcatgctggaacatgtttgggcctcttagttccagtgaagggaaatcttaatgctatgGCATACAACAACATTcaatacaattgtgtgcttccaactttgtagcaacagtttagggaagaaccacatatgggtgtgacggtcaggtgtccacaagcttttggccatatagtgtatctctgatatatttatatcaaattTAGATATTGGaaacacatgtttttttttcccatgttgtCTAAGATGGACAGTTAAGATGGTCAAGCTATGGGGTAATGTCTTTAATGATGTAAGGTTGATGTGATTGAAATACCTTTACCAATACTGATTTAATCCATGGTGGGACTAACTATGTTAGCTTGTCTATAGCATATtagtgcacacacagacacacacacatacccagaCCCAGTTGTTTAACCTGACTGAGATGAGTGGTTTCTATAGatgtttgttattgttttagCCTGTAGTTGgaactttgctttttttattagtCAATCCAGTATCTATGTGGATTAGTTATTAGTTTCTAATCTTTTGAGTTAACATTTCTTACTTTCAGCATTGTCATTTATTACATCATCACCAATAAACCATTCCAAGCAAACTGA

Function

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0016310 phosphorylation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49390 lncRNA upstream 16045 6662282 ~ 6702806 (+) True G41752
TU49280 lncRNA upstream 116688 6601912 ~ 6602163 (+) True G41654
TU49279 lncRNA upstream 119884 6598703 ~ 6598967 (+) True G41653
TU49277 lncRNA upstream 133403 6584855 ~ 6585448 (+) True G41651
TU49224 lncRNA upstream 166736 6519059 ~ 6552115 (+) True G41600
TU49521 lncRNA downstream 203328 6951392 ~ 6968839 (+) True G41857
TU49621 lncRNA downstream 268640 7016704 ~ 7016925 (+) True G41951
TU49784 lncRNA downstream 600095 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA downstream 613136 7361200 ~ 7364931 (+) True G42098
TU49923 lncRNA downstream 674027 7422091 ~ 7422296 (+) True G42208
XM_026934017.2 mRNA upstream 19332 6681141 ~ 6699519 (+) True abcg2d
XM_026934026.2 mRNA upstream 19332 6681141 ~ 6699519 (+) False abcg2d
XM_026935886.2 mRNA upstream 38565 6662378 ~ 6680286 (+) True ppm1k
XM_026935894.2 mRNA upstream 38565 6662401 ~ 6680286 (+) False ppm1k
XM_034302744.1 mRNA upstream 38565 6662548 ~ 6680286 (+) False ppm1k
XM_026933883.2 mRNA downstream 31342 6779406 ~ 6795508 (+) True dkk2
XM_026938759.2 mRNA downstream 96808 6844872 ~ 6917655 (+) False tbck
XM_026938752.2 mRNA downstream 97401 6845465 ~ 6917655 (+) True tbck
XM_026942115.2 mRNA downstream 378723 7126787 ~ 7140910 (+) True sgms2a
XM_026942108.2 mRNA downstream 378723 7126787 ~ 7140909 (+) False sgms2a
XR_003404319.2 other upstream 1362154 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 1377101 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 2884240 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 4553067 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 4627630 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 455886 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 901134 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1717683 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1721560 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3804195 10552259 ~ 10558295 (+) True sprn

Expression Profile