Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034302049.1 |
| length | 935 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | LOC117596572 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 24133623 ~ 24136847 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404001.2 | lncRNA | upstream | 75725 | 24055154 ~ 24057898 (+) | False | LOC113540163 |
| TU61305 | lncRNA | upstream | 75736 | 24055220 ~ 24057887 (+) | False | LOC113540163 |
| TU61303 | lncRNA | upstream | 75736 | 24055241 ~ 24057887 (+) | False | LOC113540163 |
| TU61304 | lncRNA | upstream | 75736 | 24055241 ~ 24057887 (+) | False | LOC113540163 |
| TU61283 | lncRNA | upstream | 119905 | 24013518 ~ 24013718 (+) | True | G51840 |
| TU61408 | lncRNA | downstream | 64 | 24136911 ~ 24137372 (+) | True | G51944 |
| TU61409 | lncRNA | downstream | 23903 | 24160750 ~ 24167875 (+) | True | G51945 |
| TU61411 | lncRNA | downstream | 45734 | 24182581 ~ 24182780 (+) | True | G51947 |
| TU61422 | lncRNA | downstream | 60174 | 24197021 ~ 24210304 (+) | True | G51958 |
| TU61421 | lncRNA | downstream | 77993 | 24214840 ~ 24215585 (+) | True | G51957 |
| XM_034302983.1 | mRNA | upstream | 134223 | 23868151 ~ 23999400 (+) | False | lrrfip2 |
| XM_034302984.1 | mRNA | upstream | 134223 | 23869644 ~ 23999400 (+) | False | lrrfip2 |
| XM_026936128.2 | mRNA | upstream | 134223 | 23885476 ~ 23999400 (+) | True | lrrfip2 |
| XM_026936154.2 | mRNA | upstream | 134223 | 23885476 ~ 23999400 (+) | False | lrrfip2 |
| XM_026936136.2 | mRNA | upstream | 134223 | 23885476 ~ 23999400 (+) | False | lrrfip2 |
| XM_026939158.2 | mRNA | downstream | 179856 | 24316703 ~ 24345368 (+) | True | ggps1 |
| XM_026939154.2 | mRNA | downstream | 213337 | 24350184 ~ 24402454 (+) | False | b3galnt2 |
| XM_026939153.2 | mRNA | downstream | 213341 | 24350188 ~ 24402454 (+) | False | b3galnt2 |
| XM_034302678.1 | mRNA | downstream | 214495 | 24351342 ~ 24402454 (+) | False | b3galnt2 |
| XM_034302682.1 | mRNA | downstream | 214495 | 24351342 ~ 24402454 (+) | False | b3galnt2 |
| TU61306 | other | upstream | 75736 | 24055241 ~ 24057887 (+) | True | LOC113540163 |
| TU61214 | other | upstream | 328128 | 23793680 ~ 23805495 (+) | False | slc29a3 |
| TU61166 | other | upstream | 436329 | 23697032 ~ 23697294 (+) | True | G51749 |
| TU60962 | other | upstream | 678074 | 23454428 ~ 23455549 (+) | True | G51562 |
| XR_003404579.1 | other | upstream | 1018584 | 23114185 ~ 23115039 (+) | True | LOC113545030 |
| TU63018 | other | downstream | 2849131 | 26985978 ~ 26992711 (+) | True | G53328 |
| XR_003404257.2 | other | downstream | 3061062 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | downstream | 3061062 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | downstream | 3061062 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63410 | other | downstream | 4310530 | 28447377 ~ 28448311 (+) | True | G53692 |
