RNA id: XM_034302560.1


Basic Information

Item Value
RNA id XM_034302560.1
length 3379
RNA type mRNA
GC content 0.46
exon number 3
gene id cxxc4
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 838511 ~ 871353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaattttttaaatctaatctgTGTCTCAGAGCGGGAGGATGGCGCTTCTGTCCTGAGCTCTTCTccttcatctgtccatcatgAGCCGCTAACAGGAGACCggacttctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacggatccCGGTAGTGCGCAGTGGAATAATCGCAGTGGAATAATCGCAGGATGCTAACGCATTAGTCTCGGAGGAGTTTTGGCGTTGAAGAAGGACGGACCCCATCGCCGCTTGACGTCTCTGCTACAGCGCTGATCACAGCGAGCGGCCATGTCGAACATAAACAGTGCGCTCTGCATCGAGAGCGGCGCTAACGCAGACGTGTCTCTGTTACAAAAGGACGCCCTTCAGGAAGCCGGATTAAACCAGCTGTTGGATTACAACGCAGAAATCGAACGTTACCGCTCTTTCGCAAACTTTTACAAAACCAATGGCGCGTTTCCTCAGAGTGCCAAGATCGCCCGCATCACCACGCCCATCTTTCCCAGCGCGCGGATTGGTGTTTCGCCGTGGAACTGTGACAACGCCGTGCTCTGGGGGCGCAAGTCGGCGCCGATCCACCCGAACAGAACCAGGAGCGAGTCGTCTCAGCGGCCCGGGAAACCCGAGACTCTGCAGATGGCGAACGGTAACTTCCTGTCCACGTTATCGCCGGAGCACTGCAGGCCGTTAGCGGGGGACTGTGTTAACAAGCTGAAGTGCGGCGGCGCTGCTGAAGCGGAGATAATGAACCCGGCGTTCTCCGCCCTCCCTGCTCTGGGGGGAATCTCTTTACCCCCCGGGGTCATCGTCATGACGGCACTGCACTCTCCCGCCTCCGCATCCGCCGTCACAGACAGCGCGTTTCAGATCGCCAACCTGGCAGACTGCCAgcagcataataataatcacagtaATCACATTTCCTCTCCTGCGTCCGGAGGAAACGCCGCCAAGAAAAAGAGGAAGCGCTGCGGCGTGTGCGCCCCCTGCAGGCGGCTCATTAACTGCGGCGTGTGTAGCAGCTGCCGAAACCGCAAGACCGGACACCAGATCTGCAAATTCCGCAAATGCGAGGAACTGAAGAAGAAACCGGGATCATCACTCGAGAGGACGCCGGTGAGCAGCGGAGAGGCGTTTCGATGGTTCTTCTAGTCCCAAAGAAACACACCGTCATGCCACATTATTCAATAACTGACtcaaaaaaatggatttaaaggCTCCAGAACCTGGAAGTGAAACCAAACCTCGCTGGAGGAACGACAGAAACCACAGAAacgagacagacggagagagagagagagagagagagagagagagaggtggacgAGAGAAGGGTTAACGctgtaatttgtttatttcttgtgtAATTATCACCATTTTCTGTGTCTCTGCGTGTTCGGTGTCGTGGCTGATCGAGCTACAGACGCTAACTTATAGACAATCAGCACCCGGAATAAACCATTCAAACGGAATATACCATTCACCTGGAATATACCATTCTCACGGAGGACGGCGTGATCACGCTGAATGTCTCGCAGCTGTGAGTCGAGGTGACTGAAGGACAAGCGACAACAGGAGGACATCTATGAAGCTGGAATAAACCATTCCTGAGGAGACGGGGGGATCAGAtacaatctgtctgtctgttcatctgtctgtctctccttctatCTGTCTGCTCTGCCTCTTTATGTATGTAGCTAGAACAATCCATTCcaggagagaaggaaaggagctgatgctctctctctctctctctctctcacctctctctcactttctctctttgaGACCAAACCATTTCTCAACAGAGGGGAGGATCGGATATTTTACGGATATTCTATCTATCCATCATTCCATTTacttatctgtctctctgtccatctctctgtgtgcaCATCcctcctccatccctccatccatccctccatccatccatccctccatgaTTGGAACAAACCATTTCTGATCAGAGGTGGAGGATGATCATTTATGATCTACTTACAGTGTCCCACGATTGTCATGTGACCTTATCGaatgagtgtaatgatgtcATCGATGTGATGATGACATCACGCACAGATTGGAACAGTCGCCTCGACAAACCGCTGCCGAACGATACGGACGGAGGAAATGCGATCGTACGCCAGACCTGCAGCAATAATCGGGAAATTCTTCAGAGTTTCAGTTGATTTATGCGCCGGGACGAGAGACGCAGCCAATCACGGTTctgtacttttcctttaatttgccGCTGTTCGGACGTTACGCAGGGCATATTGTCTTGCTAACAACGtgttgtaatttttaatttgtgatGTGAAACGTCTTGATTTATGGAAAAACACTGGATCCTCGATTGTTTCGGATGAAATGTTTTCATAACGTTTCAATTTCTgttacagaaacacagaaaggctgtgcatttattattcatttctcTGTCCAGAGATCTTTGCTACGAAATCTTAGTTACGAAGTTAGTTAGCAGCTAAAGTTGCATCCATTCTGGGCTGAAGTCTCTCACATGGGCTactgaaatcaaataaaaataaaattaataatcttTCATAATTATGATCGGAGCATCTTAGCTgaactaactaaataactagCTAAGTTATAGCTCGATAACACAAGGTATtgaatatagctagctagctagtgttacaCTGGAGTAGCTAAACATGGGTAACTAATCACCTAGCTAGCTtgcaaatactgtataataaataaaaacaactggaCAGAAAACTTTATAATAACAACGCACAGCCTGTCTGGACTTCTGTAGGTTGGACGcacaagtaaataaattaaggtTAAATTTCCAAACTGCTAAATTTAGCAAAGATCTCCTAGCTATGTGCACCAGATGAACTGAAgcgagaaaaagaaaattaaaattcctctcagaaattcTTCCAGATAATCTCAttatagctagctggctaatgttagcaCTTATTATTATGACCATTTATCATGATGAATTAAAatttcctctcagaaatcctgtcggATTACTCCATGtttgctagctggctaaagtTAGCGGTAAAaatgatgaatattaatgagtgatttaaaatgttaagaCTTTGCTGTAACTGACCTTCAGTTCGTCTGGTGTAACAGATCAGATCTGTGTAATGTGAAGCCCAGAAACTGAAATTATGGTGTTAAACACGTGAGCGATGTTACTCACTAGCGCTGATGCTAGCGCTAACGCCCTGCTGTtgcatgtgtatctgtgttttggGTTTAAAGATTACTGAGAGTTTGTATATCGTCGTTGTGATGCTTTTATGTGttcaaatgaaaggaaaaaaaagaccaa

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45596 lncRNA downstream 93513 722152 ~ 744998 (-) True G38494
TU45598 lncRNA downstream 109695 723474 ~ 728816 (-) True G38496
TU45579 lncRNA downstream 129406 708051 ~ 709105 (-) True G38480
TU45575 lncRNA downstream 132175 705979 ~ 706336 (-) True G38476
TU45565 lncRNA downstream 141508 691147 ~ 697003 (-) True G38467
TU46548 lncRNA upstream 30595 901948 ~ 907408 (-) True G39303
TU46549 lncRNA upstream 30767 902120 ~ 905871 (-) True G39304
TU46552 lncRNA upstream 32645 903998 ~ 907834 (-) True G39306
TU46563 lncRNA upstream 49774 921127 ~ 925526 (-) True G39312
TU46564 lncRNA upstream 82546 953899 ~ 954107 (-) True G39313
XM_026910954.2 mRNA downstream 82704 746338 ~ 755807 (-) True cdkn2a/b
XM_034302585.1 mRNA downstream 570696 221729 ~ 267815 (-) True LOC117596825
XM_026910937.2 mRNA upstream 54598 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 133124 1004477 ~ 1007050 (-) True LOC113524614
XM_034301860.1 mRNA upstream 194034 1065387 ~ 1069815 (-) True ints12
XM_026910962.2 mRNA upstream 274776 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA upstream 274776 1146129 ~ 1153350 (-) True anp32b
TU45475 other downstream 522983 314981 ~ 315528 (-) True G38400
TU45455 other downstream 570712 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 577360 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 399188 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 414455 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 421691 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1000580 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 1000580 1871933 ~ 1877225 (-) False G39603

Expression Profile