RNA id: XM_034302589.1


Basic Information

Item Value
RNA id XM_034302589.1
length 1275
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC113525489
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 360956 ~ 370724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGGCTTCTCCAGCAACTACAAGACATGTCGCTTTGACGTCAGTAGCAGCTCCATCAATAGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCGGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACGCTctaaacacacttctTAATAAACCTGGTGCAGAATCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCATTTCAAAGATGGAGACACCAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCACAGAGCACACCTATATTGGGGAATGTCCTGATATACATTCGTCTAGTTTTTAAGAACTTGTCCAGAGTACCTAGTGAGGCTGAGGTTCTCAAAGCTGCAAATGCTCTGCTGGATGCAAAGATCAGAAGAGCACGAGATCTTACAACACAAAAACTGAACGACCCTGTGAGCATACAGAATGTCACCTATCAGAAAATTGACAACAACTCATACATTATCAGCTTTGGATTCCAAATCAGTGATGTGACCATCTCCAAAGACATTCAGCTGAGGAATGAAACATATGATTTAATCCAAAACACCATCAACAGCCTGCTGAACACTATTCTGAATGATAAACCTGCTACTCCATTTGTCTTCCCACGAGCAAACTACACgTTTAATGGTACAGTCGTAGTGGCTGATTCAGAATACATCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTTCTGCAATACTCAACTTTAGCGGCCTGTTGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAGCACACAACACCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTGTTGTCTGCTGTGTGGCTGCTGTGCTGGTTTAAGGAGGCTACAACAGAAGACGGTCCTACAATGTTCAATACACAACACGAAATGGActcttttaaaaacagattgagtgtaaaataacaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45376 lncRNA upstream 21059 338816 ~ 339897 (+) True G38324
TU45375 lncRNA upstream 40936 319816 ~ 320020 (+) True G38323
TU45374 lncRNA upstream 45285 315329 ~ 315671 (+) True G38322
TU45368 lncRNA upstream 85907 269320 ~ 275049 (+) True G38317
XR_004577903.1 lncRNA upstream 218720 140249 ~ 142236 (+) True LOC117596908
XR_004577801.1 lncRNA downstream 252631 623355 ~ 624398 (+) True LOC117596828
TU45414 lncRNA downstream 317946 688670 ~ 699198 (+) True G38361
TU45418 lncRNA downstream 317946 688670 ~ 699198 (+) False G38361
XR_004577806.1 lncRNA downstream 320161 690885 ~ 693150 (+) True LOC117596830
TU45580 lncRNA downstream 339611 710335 ~ 710574 (+) True G38481
XM_034302591.1 mRNA upstream 84 356088 ~ 360872 (+) True LOC117596826
XM_034303148.1 mRNA upstream 4252 351410 ~ 356704 (+) True LOC117596913
XM_034302586.1 mRNA upstream 147227 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA upstream 147227 200601 ~ 213729 (+) False LOC113524725
XM_034303146.1 mRNA upstream 195442 153816 ~ 165514 (+) True LOC117596911
XM_034303149.1 mRNA downstream 47790 418514 ~ 426890 (+) True LOC117596915
XM_034303150.1 mRNA downstream 79870 450594 ~ 464059 (+) True LOC113525486
XM_034302588.1 mRNA downstream 254369 625093 ~ 632530 (+) True LOC113525482
XM_034303153.1 mRNA downstream 299163 669887 ~ 688786 (+) True LOC113525487
XM_034303156.1 mRNA downstream 327453 698177 ~ 702567 (+) True LOC113525488
TU45362 other upstream 152058 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 155286 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 318390 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 351403 722127 ~ 744984 (+) False mtap
TU45707 other downstream 693248 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 732096 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 795316 1166040 ~ 1168639 (+) False trmo

Expression Profile