RNA id: XM_034302591.1


Basic Information

Item Value
RNA id XM_034302591.1
length 1568
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC117596826
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 356088 ~ 360872 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAACGGCTTCTCCAGCAACTACAAGACATGTCGCTTTGACGTCAGTAGCAGCTCCATCAATAGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCGGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACGCTCTAAACACTCTTCTAAATGAAGCCGTGCAGAACCATTTGAACCTCAGAGCTCTTTCTTCATGAGTTCAGAAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTCAATAGGCTCATGATACAGAATGTGTCGTCTACAACGGCTTCTCCAGCAACTACAAGACATGTCGCTTTGACGTCAGTAGCAGCTCCATCAATAGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCGGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACGCTCTAAACACTCTTCTAAATGAAGCCGGTGCAGAACCATTTGAACCTCAGAGCTCTTTCTTCATGAGTTCAGAAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTCAATAGGCTCATGATACAGAATGTGTCGTCTACAAACGGCTTCTCCAGCAACTACAAGACATGTCGCTTTGACGTCAGTAGCAGCTCCATCAATAGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCGGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACGCTCTAAACACTCTTCTAAATGAAGCCGGTGCAGAACCATTTGAACCTCAGAGCTCTTTCTTCATGAGTTCAGAAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTCAATAGGCTCATGATACAGAATGGTATgccattaaaaatatcttgtatCACACCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45376 lncRNA upstream 16191 338816 ~ 339897 (+) True G38324
TU45375 lncRNA upstream 36068 319816 ~ 320020 (+) True G38323
TU45374 lncRNA upstream 40417 315329 ~ 315671 (+) True G38322
TU45368 lncRNA upstream 81039 269320 ~ 275049 (+) True G38317
XR_004577903.1 lncRNA upstream 213852 140249 ~ 142236 (+) True LOC117596908
XR_004577801.1 lncRNA downstream 262483 623355 ~ 624398 (+) True LOC117596828
TU45414 lncRNA downstream 327798 688670 ~ 699198 (+) True G38361
TU45418 lncRNA downstream 327798 688670 ~ 699198 (+) False G38361
XR_004577806.1 lncRNA downstream 330013 690885 ~ 693150 (+) True LOC117596830
TU45580 lncRNA downstream 349463 710335 ~ 710574 (+) True G38481
XM_034302586.1 mRNA upstream 142359 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA upstream 142359 200601 ~ 213729 (+) False LOC113524725
XM_034303146.1 mRNA upstream 190574 153816 ~ 165514 (+) True LOC117596911
XM_034303145.1 mRNA upstream 202613 142352 ~ 153475 (+) True LOC117596910
XM_034303144.1 mRNA upstream 218858 130641 ~ 137230 (+) True LOC117596909
XM_034302589.1 mRNA downstream 84 360956 ~ 370724 (+) True LOC113525489
XM_034302590.1 mRNA downstream 3331 364203 ~ 370724 (+) False LOC113525489
XM_034303149.1 mRNA downstream 57642 418514 ~ 426890 (+) True LOC117596915
XM_034303150.1 mRNA downstream 89722 450594 ~ 464059 (+) True LOC113525486
XM_034302588.1 mRNA downstream 264221 625093 ~ 632530 (+) True LOC113525482
TU45362 other upstream 147190 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 150418 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 328242 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 361255 722127 ~ 744984 (+) False mtap
TU45707 other downstream 703100 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 741948 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 805168 1166040 ~ 1168639 (+) False trmo

Expression Profile