Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577802.1 |
| length | 1016 |
| RNA type | misc_RNA |
| GC content | 0.45 |
| exon number | 8 |
| gene id | spef1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12929559 ~ 12937302 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53620 | lncRNA | upstream | 59336 | 12870003 ~ 12870223 (+) | True | G45376 |
| TU53604 | lncRNA | upstream | 108170 | 12820856 ~ 12821389 (+) | True | G45360 |
| TU53595 | lncRNA | upstream | 118309 | 12810919 ~ 12811250 (+) | True | G45351 |
| XR_004577841.1 | lncRNA | upstream | 190333 | 12733432 ~ 12739226 (+) | True | LOC117596851 |
| TU53325 | lncRNA | upstream | 254936 | 12674408 ~ 12674623 (+) | True | G45170 |
| TU53723 | lncRNA | downstream | 23288 | 12960090 ~ 13031136 (+) | True | G45453 |
| TU53729 | lncRNA | downstream | 75144 | 13011946 ~ 13017600 (+) | True | G45459 |
| TU53744 | lncRNA | downstream | 115438 | 13052240 ~ 13052529 (+) | True | G45473 |
| TU53786 | lncRNA | downstream | 158869 | 13095671 ~ 13095881 (+) | True | G45508 |
| TU53888 | lncRNA | downstream | 374875 | 13311677 ~ 13312080 (+) | True | G45592 |
| XM_026941541.2 | mRNA | upstream | 505 | 12920496 ~ 12929054 (+) | True | adam8a |
| XM_026941547.2 | mRNA | upstream | 505 | 12920496 ~ 12929054 (+) | False | adam8a |
| XM_026941862.2 | mRNA | upstream | 17945 | 12909723 ~ 12911614 (+) | True | msx3 |
| XM_026944741.2 | mRNA | upstream | 54574 | 12871072 ~ 12874985 (+) | False | fuom |
| XM_026944749.2 | mRNA | upstream | 54574 | 12871306 ~ 12874985 (+) | True | fuom |
| XM_034302748.1 | mRNA | downstream | 20354 | 12957156 ~ 12981378 (+) | False | cfap43 |
| XM_026933492.2 | mRNA | downstream | 20354 | 12957156 ~ 12976678 (+) | False | cfap43 |
| XM_034302749.1 | mRNA | downstream | 20354 | 12957156 ~ 12973448 (+) | False | cfap43 |
| XM_026933476.2 | mRNA | downstream | 20355 | 12957157 ~ 12976748 (+) | True | cfap43 |
| XM_034302747.1 | mRNA | downstream | 20355 | 12957157 ~ 12976748 (+) | False | cfap43 |
| trnat-ugu | other | upstream | 261673 | 12667814 ~ 12667886 (+) | True | trnat-ugu |
| TU53286 | other | upstream | 286364 | 12639836 ~ 12643195 (+) | False | LOC117596823 |
| trnay-gua | other | upstream | 293153 | 12636320 ~ 12636406 (+) | True | trnay-gua |
| XR_004577785.1 | other | upstream | 1163145 | 11745749 ~ 11766414 (+) | False | LOC113544122 |
| XR_003404598.2 | other | upstream | 1202787 | 11682864 ~ 11726772 (+) | False | LOC113545306 |
| XR_003404144.2 | other | downstream | 45604 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU53738 | other | downstream | 95477 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| TU54033 | other | downstream | 561290 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| XR_003404567.2 | other | downstream | 1276600 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| XR_004577898.1 | other | downstream | 1424565 | 14361367 ~ 14367446 (+) | False | cgas |
