RNA id: XR_004577804.1


Basic Information

Item Value
RNA id XR_004577804.1
length 3467
RNA type misc_RNA
GC content 0.53
exon number 12
gene id kcnh5b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31934259 ~ 31989051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCGGGGCGTTACCATGAGCACGAGCCTCACCGTCCCGGCGCTCCACGCCGCACGCGACCGTGTCCGCTTGACGCGCGAGCAGCGCGAAACGGTCCTCCGCTGAAGCGCGAGCAGCAGCGATGCCCGGCGGAAAGAGAGGGCTCGTGGCGCCGCAGAACACTTTCTTGGAGAACATCGTCCGGCGCTCGAGCGAGACAAGTTTTCTGCTGGGGAACGCTCAGATTGTCGACTGGCCCGTGGTCTACAGTAATGACGGCTTCTGCAAGCTGTCGGGATACCACAGAGCAGAGGTCATGCAGAAGAGCAGCACATgcagttttATGTATGGCGAGCTGACAGATAAGAGGACCATAGAGAAAGTGAGACAAACCTTCGACAACTATGAGTCCAACTGCTTTGAAGTGCTGCTTTACAAAATGAATAGAACGCCGGTGTGGTTCTACATGCAGATTGCACCAATCAGGAATGAGAATGACAAGGTGGTGCTCTTCCTGTGCACGTTTAAAGACATCACTGTGTTTAAGCAGCCTATTGAGGATGAGAGCACCAGAgGCTGGAGTAAGTTCACCAGGCTCACTCGTGCTCTGACCAACAGCCGGGGCACCAACCAGCAGCTGACTCCTATGAACAAGCCTGAGGTCAGCTCCCACAAAACCTCCCGCCTCGCagagGTGCTTCAGCTTGGTTCAGAAATCCTGCCTCAGTACAAGCAGGAAGCTCCCAAGACACCTCCTCACATCATCCTCCACTACTGCACCTTCAAGACCACGTGGGACTGGGTGATCCTCATCCTCACCTTCTACACGGCCATCATGGTGCCCTACAATGTCTCCTTCAAGACCAAGCAGAACAACGTCACCTGGTTGGTGCTGGATAGCGTCGTGGACGTCATCTTCCTGGTGGACATTGTGCTCAACTTCCACACCACGTTCGTCGGGCCCGGAGGCGAGGTCATCTCAGATCCCAAGCTGATCCGAATGAATTATCTCAAGACCTGGTTTGTGATAGACCTGCTCTCTTGCTTGCCATATGACATCATCAACGCTTTCGAGAACGTGGATGAGGGCATCAGCAGTTTGTTCAGCTCTCTGAAGGTGGTGCGTCTGCTGCGTTTGGGGCGTGTGGCGCGAAAACTGGACCACTATCTGGAATACGGCGCGGCCGTGCTGGtcctgctggtgtgtgtgttcggaTTGGTGGCCCACTGGCTAGCCTGTATCTGGTACAGCATTGGAGATTATGAGGTCATTGACAAGCTCAGTAACACCATCAAGACGGACAGCTGGCTCTACCAGTTAGCCTTGACCACCGGCTCTCCGTACCGCTACAATGCCAGCGGCTCTGGTCAATTGGAAGGCGGCCCCGGGAAACACACGCTCTACATTACGTCCCTGTATTTCACCATGACGAGTCTGACAACCATCGGATTCGGGAACATCGCTCCCACCACTGACGGAGAGAAGATCTTCTCTGTGGCCATGATGATGGGGGGATCTCTTCTCTACGCCACAATCTTCGGAAACGTCACCACCATCTTCCAGCAGATGTCCGCCAACACCAACCGCTACCATGAGATGCTGAACAACGTGAGGGACTTCCTGAAGCTTTACCAGGTGCCCAAAGGCCTGAGCGAGCGGGTGATGGATTACATCGTCTCCACGTGGTCCATGACCAAAGGCATAGACACCGAGAAGGACAGTAGTCTCCTGTCCACATGTCCACAGGTGCTCTCCATCTGTCCCAAAGACATGCGTGCAGACATCTGCGTCCACCTGAACAGGAAGGTGTTTAACGAACACCCTGCGTTCCGATTGGCCAGCGACGGCTGTCTGCGCTCGTTAGCTGTGGAGTTCCAGACCATCCATTGTGCTCCCGGGGACCTCATATTCCACGCCGGGGAAAGCGTCGACACGCTGTGCTTCGTAGTGTCTGGTTCACTCGAGGTTATCCAGGACGACGAGGTCATTGCCATACTAGgtaAAGGTGATGTGTTCGGCGACGTGTTCTGGAAAGAGACGACCCTAGCTCACTCGTGCGCTAACGTCAGAGCGCTAACTTACTGTGATTTGCACATCATTCACAGAGATGCTCTGCTAAAAGTGCTCGACTTCTACACGGCGTTCGCCAACTCCTTCTCCCGCAATCTCATCCTCACCTGCAACCTGCGCAAACggatcatcTTCCGTAAGATCAGTGATGtgaaaaaggaggaagaggaacgTCAACGCTCGAAGAACGAGGTTCCACTGACCATCCCCGTGGACCACCCGGTCCGAAAACTTTTGCAGAAATTCAAACAGCAGAAGGAGCTCCGCAACCAGGAGGCTTCAGTCCAGATTGATGTGGAGAAGAACCAGCATAGCTTCCagctacattcacacactcagctacagcacacacacacttccatccCCCAGAGCACGCTGCATGCGGTGCAGAATGGGAGATCTAGCATAGGTTCCTGTAGCAGCGTGGTCACCATCTCGCAGATCACACCAATCCAGAactctttgtctttctccaaACCTGGTGACCCGCTCAAACAAAACAACTGTGATGTCATGGAACTGAAGCCCGCTGGAGATCAAACCCTGAGCATGACCCGACTGAAGCTGAGCAACGCCACTCGCACCAAACCGGTCGCAACCGGTCGTGGGTGGATGCGGCTGAAGAACAACATGGCCATCCCGGATTCGCCACCACAGGAGAGTAGGAAAGAAGGGCTGAACAACGTGACGAAAGCGGCGTCTACAGAACGGCTCTCACCCGAGGTCAAGGTGCAGATCGAAGGCGTCATGGACGTCACCAGGTCCAGAAAGAACTCGCTCCGTAAAACAGACTCATGGGATAGTGGGTTGACCCAAAGCGATCAGAGGCTAGATAATGTAGAAGAAGTGCAGAGTCCCGTACCGGGCGATAGCAGCTGTGGTGGAGGAGAAGGACTATCGAGGGATATGTTCTCATACCACGAGCTGTCATTTCAGACCACGCTTCAGGAGGCAAGGCTGGAGCTACGGGGCGAGATCCAAGCTTTGAGTTCCAGGATGGCCGCTTTAGAGGAACAAGTAGGCCAGATTCTCAGACTGCTCTCAGAACAGAACGATCCACTGGGTCAGACCTGTACACCACAAATACACAGACCCAAACCTAAAACAGAAGAACTTTTCACCATCTCTACACCGGGTAGTCCTGATTCAGACAGCGATGAAGTGGTGATCTGAGCAAGAGCAAAAATGAATGCTGAACCAAAAAAACTCCTAAAGCACTGGTCTCTATGTGAAAAAGATGAGgtgGAAGATCATTGCTGTTATGAAGGCACAGGTAGATCCACATAGCACAGGTACATAACGAGACTTCAGGATGAGCACACAACACAAAGGTAAGATTAACTAAACCTAGTAAGTCTAGTTAAGAGGAACGGGTAAAACCATTCAGCAGGGGGCCAACTCTGAACCAGAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66216 lncRNA upstream 12579 31857506 ~ 31933623 (+) False ppp2r5eb
TU66217 lncRNA upstream 12579 31857506 ~ 31933623 (+) False ppp2r5eb
TU66229 lncRNA upstream 61422 31883845 ~ 31884780 (+) True G56245
TU66219 lncRNA upstream 64744 31876460 ~ 31881458 (+) True LOC113542154
XR_003404266.2 lncRNA upstream 65516 31876487 ~ 31880686 (+) False LOC113542154
TU66394 lncRNA downstream 146220 32135271 ~ 32135588 (+) True G56387
TU66395 lncRNA downstream 148317 32137368 ~ 32137708 (+) True G56388
TU66396 lncRNA downstream 150531 32139582 ~ 32139784 (+) True G56389
TU66397 lncRNA downstream 151523 32140574 ~ 32140982 (+) True G56390
TU66405 lncRNA downstream 202858 32191909 ~ 32194526 (+) True G56398
XM_034302909.1 mRNA upstream 12573 31909043 ~ 31933629 (+) False ppp2r5eb
XM_034302908.1 mRNA upstream 12573 31909044 ~ 31933629 (+) True ppp2r5eb
XM_034302910.1 mRNA upstream 12573 31909681 ~ 31933629 (+) False ppp2r5eb
XM_034302911.1 mRNA upstream 12573 31923417 ~ 31933629 (+) False ppp2r5eb
XM_034302546.1 mRNA upstream 38652 31905270 ~ 31907550 (+) False wdr89
XM_034302702.1 mRNA downstream 12839 32001890 ~ 32130127 (+) True syne2b
XM_026939391.2 mRNA downstream 284646 32273697 ~ 32277762 (+) True btbd6a
XM_026939500.2 mRNA downstream 302052 32291103 ~ 32308853 (+) True zgc:172120
XM_026939080.2 mRNA downstream 322323 32311374 ~ 32314696 (+) True tmem234
XM_034302916.1 mRNA downstream 375265 32364316 ~ 32365858 (+) True LOC117596867
TU66180 other upstream 149876 31785785 ~ 31796326 (+) True G56222
TU65162 other upstream 1459915 30479932 ~ 30486287 (+) False LOC113542119
TU65142 other upstream 1587748 30354322 ~ 30358454 (+) False mgst3b
TU64923 other upstream 2005021 29937548 ~ 29941181 (+) True G55091
XR_004577899.1 other upstream 2198855 29712258 ~ 29747347 (+) False ablim1a
TU66551 other downstream 495925 32484976 ~ 32487366 (+) False zfyve26
TU66962 other downstream 878781 32867832 ~ 32868341 (+) True G56863
TU67222 other downstream 1737818 33726869 ~ 33728808 (+) False G57080

Expression Profile