RNA id: XR_004577811.1


Basic Information

Item Value
RNA id XR_004577811.1
length 1852
RNA type misc_RNA
GC content 0.50
exon number 11
gene id khdrbs1a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30152908 ~ 30161224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGGTTTCTTTAAATacggatggggaaaaaaacgcATCGACGGCATCAATACCTTTGTTAGAGAAGCTGAATAAATCTTCGCTTCTTCTCCATTCCAGAGCCCTGAAAGtgctgttaaattaaattacacgCAGCCGGGTGTTTATATTTAGGGTCCATGGATGCCAAccgtaacaacaacaacaaaggaaagaaagccaacaacaacagcagcaataaTCCCAACATGGAGAGTGAGAGTAAATATCTGCCGGAGCTGCTGGCGGAGAAGGACAGCCTGGACGCGTCGTTCACTCACGCCATGAAACTGCTCACTGCAGAGATCGAAAGGATTCAGAAAGGCGAGCCGAAAAAAGACGGCGAGACGTACCTGGACCTGTTCACTGCCAAAAACGTGCGAGTGAAAGAACGAGTGCTTATTCCTGTCAAACAGTACCCTCGGTTCAACTTTGTGGGGAAGATTCTCGGACCCCAGGGCAGCACCATCAAAAGACTGcaggaggaaaccggagcaAAGATTTCAGTCCTGGGCAAGGGCTCGATGAGAGACAAGAACAAGgAGGAAGAGCTGCGGAAGGGAGGGGAGCCTAAGTACGCTCACCTGTCCATGGAGCTGCACGTGTACATTGAAGTGTTTGCGCCGATCCCTGAATGCTACCTGCGTATGGCTCACGCTATGGATGAGGTTAAGAAGTTCCTCATGCCTGTGGACAACATGGACGAGATGCACCAGGATCCCTTCATGGACGTCGGGTATCTGAACGGTGCTCAGGATGCTCCCACTCGGGGCCGTGGAGGGCCTGGCCGGGGCCGCGGAGGCCCACCACTTCCCATGCCTGGAGCTAGGGGTCGTGGCATGCTCCCACGTGGCGGTGCCCCTCGTGGCGGTGCCCCCAGAGGAGGCCCAGGAAGAGGTGGAGCAGCTAGAGGAGCACCCGTGGGCCGGGGCGGACATCCTTCTGCCTCCACTAACCGCGGAGGAGCTGCAGGACGGTCCCGACCCCCCACTGCCTCGCAGAGGATGGCACCTGCACCCGCGCTCTCTCATCAGCAGCATCAAGCACCAGAATCGTACGAGGAATACTCGTATGACGAGACCTACGCTGAAACTCCATACGAAGGTTACGATAACTATTACAACCAGTCAGCACCACAGGGAGAAACTGAGTATTATGACTACGGCCATGGTGAGTCTCAGGAGAACTACGAATCATATGCTGAGGACGACTGGGAAGGTGCTGCGTGGGGTAGTGGCGGAGGGAAAGCTCCTTCTGCCCGCCAGAATAAAGGAAACTATCGCGAACACCCGTACGGAAGATTCTGAGACGTATCGCTCAGTCGGGTTGCCTGGGCAACCGCCTCCAATTAAGCTGATCTGATCTGCTGACTGGTATCTGACTGGATGAAACCAGTGGCCACTAAAAGATCCTAAAGTGTGCCCCAAGATCCTCTCAAGCTGCCATAAATCCTCTTTTTGTCTTCAGAACATTCCACAAAAAGCCATTTGTTCGGCTTTGGCAGCGGCAGCTGTGTCCCCCGCAAGACCCAAACGGAATATCTTCCTGCCGCGATGTTTGCTTTTCCACCTGTTAGCAAGAGTGGAAAGGCcagagatatatatttttaaagcttttatttggttaaatgttgaattattttttaagggGTGGGGTACTTggtataaaattttattaaatgattcATGAATACAgctgtattttataaatacattataaagaTTTTTATGGTGTTTTGTACAGTTAGACAGTAAATATTTTCTATAGTGTAAAATGTTCTCACATGAACTTTGTATGTCAAGtagtaaataaattattacaggaaaacaatgcA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65018 lncRNA downstream 103208 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 276148 29875406 ~ 29876760 (-) False LOC113542120
XR_003404261.2 lncRNA downstream 276194 29873060 ~ 29876714 (-) False LOC113542120
TU65077 lncRNA upstream 1528 30162751 ~ 30162970 (-) True G55220
TU65051 lncRNA upstream 37102 30198325 ~ 30200157 (-) False runx3
TU65128 lncRNA upstream 178254 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 179185 30340408 ~ 30344538 (-) False rsrp1
TU65226 lncRNA upstream 185947 30347170 ~ 30387537 (-) True G55349
XM_026939471.2 mRNA downstream 3984 30140946 ~ 30148924 (-) True LOC113542130
XM_034302579.1 mRNA downstream 41747 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA downstream 43388 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA downstream 43711 29879295 ~ 30109197 (-) False cdh23
XM_026939035.2 mRNA downstream 43711 29879295 ~ 30109197 (-) False cdh23
XM_026939415.2 mRNA upstream 2124 30163347 ~ 30175120 (-) True chp1
XM_026939142.2 mRNA upstream 38930 30200153 ~ 30253456 (-) True runx3
XM_034303117.1 mRNA upstream 179176 30340399 ~ 30343584 (-) False rsrp1
XM_034303167.1 mRNA upstream 183898 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA upstream 183898 30345121 ~ 30352293 (-) False eif2ak2
TU65057 other downstream 30086 30112034 ~ 30122822 (-) False G55209
TU65059 other downstream 30253 30111831 ~ 30122655 (-) True G55209
TU65060 other downstream 30253 30112322 ~ 30122655 (-) False G55209
LOC113541988 other downstream 471182 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 950905 29201932 ~ 29202003 (-) True trnae-cuc_11
TU65130 other upstream 179185 30340408 ~ 30344538 (-) True rsrp1
trnag-gcc_2 other upstream 594183 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 690714 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 699213 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1385137 31546360 ~ 31548633 (-) False LOC113541990

Expression Profile