RNA id: XM_034302698.1


Basic Information

Item Value
RNA id XM_034302698.1
length 2760
RNA type mRNA
GC content 0.48
exon number 13
gene id bmpr1aa
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10035488 ~ 10072123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCACGTCTTTAACTTTTTGGCAGCAGGGAATCAAAGATCCATCAGAGAACTATGTTTTATTGCTCTGCTCCAAAGTCAGACAACATCTACGACAAGGAAATTAAATGCCACTTGGATGTTCTGCTCTGTGGAGCTGAGTGATCTCAACAATCTTCCCCAACTTTCACAATGTGCTTCACCAACATGGATGTGAAAAATGGATGCATCATTATGTGTCATGGCTTAGAGGATCTTGTAAGGACAAAGCTCTGAGATTCTAGTGAAATTCCACCCTCATTGCTCACATTCTCCAGTCATCTGCTTGGGACACCACTGTTGCTCCTCAGTCTACACTTTATTGGACAATTCCATAGGCGCTGGTGTACAGAGGCAGGGGCACCTGCCGTTCCACGTGCTTGTCCCAAAAGCGCTACCAGGCTGTTTGAGAATGACCCGCTTCCACTTATTCACCATTGTTCTGTTTGAAGTCTGCATTCTCCTGCTCCCTCAGACTGAAGCTGGTCAGAACCCAGACCATGTGCTGCAGGGGGCCGGCGGCAAGCACAGCTCGGACTCCAGAAGACCAGCTCCCGGTTCGACAGTGGAGCCTGAGGACGCGCCACGTTTCCTCAGCTGTTACTGCTCAGGCCACTGCCCAGAGGACGCCAAGAACAACACCTGCATGACAAATGGCCAGTGCTTTGCCATCATTGAAGAAGATGAAAATGGAGATGTGTTCTTAAGCTCTGGCTGTATGAAGTATGAAGGCTCCCATTTTCAGTGCAAGGATTCACAGTATGCCCAGGCAAGACGGACCATTGAGTGTTGTCAGTCTGACTTCTGTAATCATGATCTGAAGCCTGAACTGCCTCCACGAGAGCCAGAGGCATTCCTTGCCCCTCACTGGCTGGCCTTGCTCAtctctgttactgtgtgttgcTGTACCCTCGTCTGCGTCACTGTGGTCTGTTACTACAGGTATAAGTGGCAAACAGAGAGGCAGCACTACCACAGAGACTTGGAGCAAGCTGAAGCCTTCATTCCTCCCGGAGAATCTATCAAAGACCTCATCCACCAGTCTCAGAGCTCAGGCAGCGGCTCTGGTCTCCCCCTGCTGGTGCAGCGTACCATTGCGAAGCAGATCCAGACGGTGCGTCTGATTGGGAAAGGCCGCTGTGGTGAGGTGTGGTTGGCCCGCTGGAGGGGGGAGAAGGTGGCAGTGAAAGTGTTTTGCACTCGTGAAGAGGCCAGCTGGTTCAGAGAGACTGAGATCTACCAGACCGTGCTTATGAGACATGAAAATATCCTGTGCTTCATAGCAGCTGATATAAATGGTACAGGAGCCTCCTCTCAGATGTACCTCATCACAGACTACCACGAGAATGGCTCTCTGTACGACTACTTGAAGTTCACCACCCTGGACACGCAGGCCTTGCTGAAACTGGCCTACTCTACAGCATGCGGTCTGTGCCACCTTCACACTGAGATCTACGGCACGCATGGCAAACCAGCCATCGCTCACCGGGACCTGAAGAGCAAGAACATCCTTGTCAAGAGAAACGGCACGTGCTGCATCGCTGACCTGGGGCTGGCCGTCAAATTTAacagTGACAGTAATGAAGTTGACATCCCTCTGAGCACTCGTACAGGAACCCGGCGCTACATGGCTCCAGAGGTCCTCGACGAAAGCCTTAGTAAGAACCACTTCCACGCCTATGTCATGGCCGACATGTACAGCTACGGATTGGTCATGTGGGAGATGGCGAGACGCTGCGTCACAGGAGGGATAGTTGAGGAGTACCAGCTGCCGTACTATGACATGGTCCCCTCAGACCCTTCATACGAAGACATGTTGcaggtagtgtgtgtgaaaggccTGCGGCCCACGGTGTCCAATAGGTGGAACAGTGATGAGtGTTTGAGGGCCATGTTGAGGCTGATGTCAGAGTGCTGGGCCCACAATCCGCAGTCACGCCTCACTGTTTTACGAGTCAAGAAAACATTAGCCAAAATGGTGGAATTGCAGGACATCAAAATCTGAGCCGTGTCTGACCTGGGTTTGTTGGCAAGGCCATTCAGAGACAGGATCAGGCTCTGTCTGGTTTAACACGGGCTGTGAGAGATCGAACTCAACTTCGATGCCGTCTTTGCTCCTTCCCTGCTTGACCTCTGAAGAGCACACggagccagtttttttttttgttgttgttgttgtttttgttttgctttctgtgAAAGCTGTACGATCACAGGCTTTGAACAGATTCAGACTGCATCTGTGAATCTTGTAGAAGTCTTGGACAACTGACCTTTCTGCCTTACACACCAAGCTACTTGTTTCTGTGTCAGCTGTGTATGCATTTGTCTCTTTTGTCTGGGATGAACCTCAATTCCTGCCATATGGAAAAACATTTGTGACTTTTTGCCAAGCGCAATTATACATGGActtgtaaataaaattgtattgttAGACTGCACAAGCTAAAAAGTAAGTAATGTTCTACTAATAGTGGTCCATAGGGCCAGACACTTCAACCTTTGAAACTGTCATAAACGAGTTCCCCGTGTATGTACGTTGAGTTTAGTTAACACTTTAATGTAGATAGTACTTAGCGGTCAGATAGTTCACACTGGTTGCTGTTAGACTTATATCAAGAAATATTCTTCCACTACAAGTCTAATTCCTGTATTTCTCAGTATTTTAAGGgaatattttgagtttttttttttttttttttttttttctttttctgttcttaAATGGATGTTGTTTTAGATG

Function

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0070724 BMP receptor complex cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51707 lncRNA downstream 3413 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 6279 10028411 ~ 10029209 (-) True G43782
TU51745 lncRNA downstream 7673 10027604 ~ 10027815 (-) True G43781
TU51743 lncRNA downstream 9019 10026269 ~ 10026469 (-) True G43779
TU51710 lncRNA downstream 11446 10021567 ~ 10024042 (-) True G43752
TU51751 lncRNA upstream 55483 10115935 ~ 10116716 (-) True G43787
TU51754 lncRNA upstream 66962 10127414 ~ 10127631 (-) True G43790
TU51773 lncRNA upstream 98477 10158929 ~ 10161502 (-) True opn4a
TU51888 lncRNA upstream 181489 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 193272 10253724 ~ 10253938 (-) True G43978
XM_026944892.2 mRNA downstream 26953 9999991 ~ 10008535 (-) False sncga
XM_026933400.2 mRNA downstream 38843 9994621 ~ 9996645 (-) True zgc:193505
XM_034302933.1 mRNA downstream 59072 9961961 ~ 9976416 (-) True shld2
XM_034302934.1 mRNA downstream 59477 9961960 ~ 9976011 (-) False shld2
XM_034302190.1 mRNA upstream 15837 10076289 ~ 10128979 (-) False ldb3a
XM_034302186.1 mRNA upstream 15837 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA upstream 15837 10076289 ~ 10122981 (-) False ldb3a
XM_026945358.2 mRNA upstream 15837 10076289 ~ 10122981 (-) False ldb3a
XM_026945383.2 mRNA upstream 15837 10076289 ~ 10122981 (-) False ldb3a
TU51003 other downstream 806604 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1181694 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1181694 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1251690 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1565059 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1648162 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2084443 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2464184 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2470991 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2571361 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile