RNA id: XM_034302701.1


Basic Information

Item Value
RNA id XM_034302701.1
length 543
RNA type mRNA
GC content 0.52
exon number 3
gene id gphb5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31996509 ~ 32006650 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCTATAGAGAAGCACGCCATCATTAACCTCTTAGAAATTCAAATGTGTACACAAGTTTGTGCTTTACATCTCAAATCATGCAGCGAAATTAACACCACatgctccctctctctgtgtgtgtatgtgtgtgtctgtgtgtgtgtttacaggctcTCTGCCACATCTCTAAGCTGTGCcgtggtgtgtgttttgttgtgtttttctctcccGAGTCATGGCTCTGCACTGGAACTCCAGCGTTTTATAGGCTGTGCTGTCAGAGAGTTCACCTTCATAGCCCAGAAGCCAGGATGTGGGAAACTGCAGATCACCACCGACGCCTGCTGGGGGCGCTGTGAGACCTGGgagAAACCAATCCTGGACCCGCCCTTCATCGAGTCCCGTCAGCAAGTGTGCACTTACAACCAGACCCAATTCATCACCGTGCAGCTGCCCAACTGCTCAGCCGGCGTGGATCCGTACTACACCTACCCCGTGGCCCGGAGGtgtgagtgtggagtgtgtgtgaccAGCACCACAGAGTGTATCACCTCCATCTGA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66299 lncRNA downstream 62919 31859807 ~ 31933590 (-) False G56305
TU66300 lncRNA downstream 62919 31887681 ~ 31933590 (-) False G56305
TU66294 lncRNA downstream 62919 31930010 ~ 31933590 (-) True G56305
TU66293 lncRNA downstream 62919 31931936 ~ 31933590 (-) False G56305
TU66315 lncRNA downstream 150314 31845037 ~ 31846195 (-) True G56315
TU66675 lncRNA upstream 64113 32070763 ~ 32072498 (-) True G56614
TU66676 lncRNA upstream 64113 32070763 ~ 32072498 (-) False G56614
TU66738 lncRNA upstream 200839 32207489 ~ 32208007 (-) True G56675
TU66757 lncRNA upstream 237273 32243923 ~ 32244290 (-) True G56693
TU66733 lncRNA upstream 293656 32300306 ~ 32309955 (-) True G56670
XM_034302651.1 mRNA downstream 165577 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA downstream 165581 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA downstream 165581 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA downstream 165581 31678383 ~ 31830928 (-) False fndc5a
XM_034302645.1 mRNA downstream 165581 31678383 ~ 31830928 (-) True fndc5a
XM_034302615.1 mRNA upstream 124797 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA upstream 124797 32131447 ~ 32188846 (-) False esr2b
XM_034302616.1 mRNA upstream 124797 32131447 ~ 32188844 (-) False esr2b
XM_034302613.1 mRNA upstream 125831 32132481 ~ 32188847 (-) False esr2b
XM_026939147.2 mRNA upstream 125831 32132481 ~ 32188845 (-) False esr2b
TU66291 other downstream 158274 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 167025 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 395824 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 447876 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1136003 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 232951 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 344151 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 367686 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 367696 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 647186 32653836 ~ 32661562 (-) True slc66a3

Expression Profile