RNA id: XM_034302711.1


Basic Information

Item Value
RNA id XM_034302711.1
length 6988
RNA type mRNA
GC content 0.48
exon number 47
gene id ubr2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22266696 ~ 22299362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGCCTGGTTTCCGGTTCCGTCGCTCTTCGCTCTTCTCTCGCCAGTGAAGTGAAACATGGCGGAGGCTGAGACTGATCGAGAAGCTGCGACTGCTCTCTGCAGCGAATTCCTCGATTTCTCTGCCAAGGACACCGCTGCGAAATGGCTTCAGGCGACAGACCTGCCCAAAGATGTCTACCAGCACCTGGCTTGCTATGTGCCCAAAATCTACTGCCTTGGGCCCAACTTGAACCCTCAGAGTGAGGACCTGCTGGCCCAGCTGCTGCTGCAGGCACCAATGGAGTGGTACCTGTGTGGAGAAGAGCCTTCAACCGGGTTGGCCAAGCTCGAGCAGAACAACCAGCCTTCTCAGCTCTGTGGTCACGTCTTTAAAGTGGGCGAACCCACGTACTCCTGCAGAGAATGTGCAGCAGACCCAACATGTGTGCTGTGCATGCAGTGCTTTCTAGGCAGTGTGCATAAGGAGCATCGTTACAGAatGACAACCTCTGGGGGAGGGGGGTTCTGTGACTGCGGCGACACAGAAGCATGGAAGAAGGGTTCTTACTGTCAGAAACATGAGCCCAACATCGGTGACTCCTCCCAGGAGGATCCACTTGCCAGTCTCTCTGCAGACATGATTGCTCGTACATATAATATCTTTTCTATCATCCTGAAATATGCTGTGGACATGCTCACATGGGACAAGGAAGATGAGCTCCCTCTAGGCCTTGAACCACcGGAGCGTGGAGACACCTATTACTGCATGCTGTTTAATGATGAGGTGCACACTTATGAACAGGTCATATACACGCTACGGAAGGCTGTGAACTGCACACAGAAAGAAGCGGTCAGCTTTGCTACTACAGTGGACAGAGATGGCCGGAAGTCTGTACGTTATGGGGATTTTCAGTTCTGTGAACAGGCCAAGTCTTTTATTGTGCGAAACACAAGTCGTCAGTCGAAGCCCCTGCGGGTTCAGGTCATGCACTCCTCAGTGGTAGCGCATCAGTGTTTTGCTCTCAAAGCGCTCTCCTGGCTTGGCCATATCATCAGATACTCAGATGCCCTGAGGAGGATCCTGTGCCAGGTGGGGCTACAGAATGGCCCTGATGGAGAGAACTCCCTTGTTGATACTTTGATGCTCTGTGACtccaaaatgtggaaagGGGCAAGGAATGTTTACCACCAGCTATTCATGAGCAGTCTCCTTATGGATTTGAAGTATAAGAAGCTATTTGCTATTCAGTTTGCAAAGAATTACCAGCGCCTCCAGACAGATTTTATGGAGGATGATCACGAGCGCTTAGTGTCAGTGACCTCTCTGTCTGTGCAACTCTTCACCGTCCCCACCTTGGCACGGATGCTGATTACAGAGGAGAACCTGATGACCACAATCATCCGCACATTTGTTGATCACCTGAGACATCGAGACTTGCAGGGACGATTTCAGTTTGAACGCTACACTGCACAACAGGCCTTTAAATTCCGCAGGGTCCAGAGTCTTATAGGAGACCTCAAATATGTCCTGATTAGCCGTCCGACAGAGTGGACCGACAATCTCAGGGAGAAGTTTCTGGAAGGACTTGATGCTTTCTTGGAGCTGCTCAAGTGCATGCAGGGTATGGACCCAGTAGTGCGACAGGTGGGCCAACACATAGAGATGGAACCAGAGTGGGAGGCAGCCTTCACGTTACAGATGAAGCTCACACACATTATCTCAATGATGCAAGAGTGGTGTGCCAGTGATGAGCGGGTGCTAATTGAAGCCTATAAGAAGTGCCTAACAGTTCTGACTTACTGCCACAGCGGTTTTACTGACGGAGAGCAACCCATCACTCTTAGTATGTGTGGCCACTCGGTGGACACCATCCGCTACTGTGTCTCACAGGAGAAAGTCAGCATTCACCTACCCGTGTCTAGATTGCTGGCAGgacTTCATAGTCTCCTTAGCAAAACAGAAGTGGCTTACAGGTTCCCTGAACAGCTACCTCTGAGTGAACTGAGCCCCCCCATGGTGATTGAGCACCCACTTCGCTGCCTGGTTCTCTGTGCGCAGGTGCATGCTGGGATGTGGAGGAGAAATGGCTTCTCATTAGTCAATCAGatCTACTACTACCACAATGTGAAGTGTAGGCTTGAGATGTTTGATAAGGACCTCATGATGCTCCAGGTGGGGGCTTCCATGATGGATCCCAACCACTTTCTGATGATTGTGCTCAGTCGTTTTGAGCTCTTTCATATCTTCAGTTCAGCAGACTGCAGGAAAAGATACAACAGAGAGAATGCTAACAAGGATGTAGTCCAGCAGAACAGCACTTTAATAGAAGAGATGCTTCACCTCATTATAATGGTTGTGGgtGAGCGGTTTACACCAGGCATTGGGCATGTTGAAAGCTGTGATGAACTAAAGAGAGAGATCATTCATCAGCTTTGTATTCGTCCCATGGCTCACAGTGAGCTGGTTAAAGCCTTGCCTGAAAATGAGAATAAAGAGACAGGAATGGAGAGAGTCATTGATAGTGTTGCAGTGTTTAAGAAGCCGGGAGTGACTGGTAGAGGTCTGTATGAACTCCGCTCAGAATGTGCCAAACAGTTCAACCTCTATTTCCACCATTACTCCAGAGCTGATCAGTCCAAGGCAGAGGAAGCTCAGCGAAAGCTTAAGAGACAGAATGGAGAGGACCCAGctcTGCCTCCGCCAGCCCTGCCTCCATTCTGCCCACTGTTTGCCAGCTTGGTAAACATTCTGCAGTGTGACGTGCTGCTTGGCATGCTGGGAGCTGTGCTACAGTGGGCTGTGGAGCCCAGCGGAGGACACTGGTCTGAGTCCATGCTGCAGAGGGTGCTGCACTTGATAGGCATGGCTCTGCTGGAGGAGCAGCAACAGCTAGAGAGCAGGGGTGATGACAATGAAGTTACCTTCAATTTCACCCTCAAAATCTCCCGTCCTGGTGAAGCCCCAAGCAATACTCCCAGTATCCTGGCTCTGTTGGAGACCTTGCAGAGCGCTCCTCACTTGGAAGTGCACAAAGACATGATTCGCTGGATCCTTAAAATGGTGGTTAGCATTAAAACGATGCGTGAGCGCACTGCTGCTGCACCTCCCTCTGAAGGAACAGGGCACTGCCAAGAGGAAACTGTGCGGGACAAAGAcaaagcagagagaaagaggaaggcaGAGATGGCTAGACTGCGCAGGGAGAAGATCATGGCTCAGATGTCGGAGATGCAGAGACACTTTATCAATGAGAACAAAGAGCTGTTCCAGCAGAGTTTAGAGGAGCTGGATGCCTCTGCCTCTACATCAGCAGAGCACAGCCCCAGTTCATGTGACAGTGCTCTGGTGTGTGTGGGACCTCGTCGTTGGCGTGCCAGAGGCGGAGAGAGGAGGCAGGTAGTGACGTGTATCCTGTGTCAAGAAGAACAGGAGATCAGACCCGATGGCAGAGCCATGGTGCTTGCAGCCTTTGTCCAACGCTCTACAGTCATGTCCAAGAACCGCCAAAGACCCCCACACAAGCCAGAGAGCTATGATCCCCTGTTCATGCACCCTGACCTGTCCTTTGGTACCCATACCGGCAGCTGTGGCCACATCATGCACTCTCACTGCTGGCAGAGGTACTTTGAGGCAGTGCAGGCTAAGGAGCAGCGCAGACAGCAGAGACTGCGTGTGCATACCAGTTATGATGTAGAGAATGGGGAGTACTTGTGTCCACTCTGTGAGTGTCTCAGTAACACCGTCATTCCTCTCCTGCCCCTCACTAAGACTGACTGCAGCAGTAGTGAGCAACCAGGTCTGGCTCATTGGCTGAATACTACCTGCCAGCAGATCAGAGCTTTGCACTCGGCTCATAAGAAGGCCAAGCCAACAAATGCTGGTGAGACAGAAACTGTGGAGGACTATCCTCCTCCTGAGGGTTTCAGGCTGGACCACACTCCAGTCAACCCTTATTCAAACTCCATAAGGGAGATGCTGATAACATTTGGTACAGCAACTTATAAAGTTGGCATTAAGGTGCACCCTAATGAGCAGGACCCTCGTGTTCCTATCATGTGCTGGGGCAGCTGTTCTTACACCATCCAGTCTATAGAGAGATTATTAGTAGATGAGGAGAAGCCTTTGTTTGGAAGTTTACCATGTAGACAGGACGACTGTTTGAGTTCCCTGGCTCGGTTTGGCTCTGCATGCTGGACTGTCTCCTCTCACTCCACTGTGCAAAATCACTTCATGCGACTGCTGGCAgCACTTGTTCCTGATCCCCAGGTGGAAAGTTCCCCCTGCATTCTGGATGTGGACATGTTCCACTTACTGgTGAGTCTGGTGCTGTCCTATTCAGCGTTGCACTGCTTAGACTCCTCAGGTCTGAGTGCGGACACTGCACAGCTGCATCTCCTCCACTTGGTCATTGTGGCTCACCTGGTCCAGATCCTCCTCACCTCTGTGCCAGAGGAGCTGACCATGGAGCAGGAGAGTGAAGGAATGGAGcgggaggaggaagagagtgTCTGTCTACTCTATAACACCCTAAGGACTCATGTAGGCTGCCTGCGTGAGGTTAGCTCGGGTTGGCATCTCTGGCGTTGTGTAAAGGCAGGCATCCTGCCCTTCCTCAGAGGAGCTGCTCTGTTCTTCCACCATCTCAATGGAGTTCCCACTCCATCTGAGCTCCATGCTGTAGGTGCTGGTGAATGGGAGGCGCTGTGTGCATATCTCTGTCTGCCCTCCAACCTGCTCCAGCTCTATTACAATCACCGGGAGCTTCTGGATCCCCTGCTTCAGGGGTGGTGCTCACATCCAGGAATGCAGCATTGTCTCCAGTCACCTGAAACCCTTATAAGttTTCCTCGGGAATCCAATAAGCTCATTGATTTGCCAGAGGACTACAGTGCACTGATCAACCAAGCTTCCAGCTtcacTTGTCCTAAGTCAGGTGGCGATAAGTCTCGTGCTCCAACGCTGTGCTTGGTGTGTGGCACGATGCTGTGCTCTCAGAGCTACTGCTGCCAGACTGAGCTGGAGAGTGAGGATGTTGGAGCATGTACAGCACACACCTTTGCCTGTGGAGCTGGTGTTGGCATTTTCCTCAGGGTGAGGGAGAGTCAGGTTCTCTTCCTGGCTGGAAAGACTAAGGGCTGTTTTTATGCTCCCCCATACCTCGATGACTATGGAGAAACAGACCAAGGGCTCAGACGGGGGAACCCTTTACACCTGTGCCACGAGCGCTACAGAAAGATTCAGAAGCTCTGGCGCCAGCACAGCATCACAGAGGAGATCGGTCATGCCCAAGAAGCTAATCAGACTCTGGTTGGCATTGACTGGCAGCACCTGTGATATCACTTCCTGAGAGGTCCTGGAGTTTCTTGGCTAATGCCAAATCTAAACTAACCAGGGACCTGCACATTTACGCCAGAGGTTGCCACATCAATGCCGCCTCTCGCACACTCCTTTCCTTccttatgtttcttttttctccctttgaGTGGATGAAtgcatggcttttttttctgtcttttttgggAGGTGTTCTTACCTCTTACTTTATTATTTGATCTaaattgatatttaaaaataaaagtaaaaaacaaacatattgcCAAGGTATTTAACTGCAAAATGATACTTTCTCCTGTAGCATAGGCTCTCAAAGTAACTGAGAGAACTGAGAAAAGCTATTTAAGTTCTGTCTGTCCCTGACACTATTAACTTATTTTATGCTCTTTCAGCTCAAGTATTGTTTACTGCACAGATGCAGTTCTCAGATTGCTTTAATATTGAATAATGCTGGTGTTCTCTCCAAGGCAAGCACAATGTTCCTCAATGACCCTTGGGTCTCAATAGTAGCCATAATGGAATGGCGCCATCTTCAGGTCATATGGCCTACTCCCTTTCTCCCTATTCCCTGTCACTGCAATATCTCTGCTGAGGGCACCCAGCAACTGAATGCTCAGTGAAGCAAATGTAAGCCAACCTGAGGAAATCTGGGAGTGCACAAGTGTCACATGTGTCTGTGAGTGCCTGTAGCGTGTGTGCTTTGTGTGCTTGTAAGGCcggtgtgtttatagtgtgatGGATTTATATGGTTGTCTAAGTGAACAGAATTAATTTAACACCGTTGTCAATTTTGCAAcctgtttttgttaaatgttatttatgtgtAGCTTTGTGAAAATTCATCATGGCGGACCTCCACTTTGGGGAAATATGTTTTGGATTTTGCTTATGTGGTTGAGGAAGCTTATTACACCTACTGacttaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtggcgtgtgtgtgcgcgtgtgtgtgtgcacgtgtagTTTCAGACATTTTAAGTCtttgagctacaacagcagttttgtttaaaaaacgaacaacaataaaaaaaataaaaaaaaaacacagaaaaacctAATATACTTGCTTCACATGTTGATCCCATGATCCTCTATGATAAACAGAATCAGGGGACAAACCATGTGATGGTGATTTCTTAACATTAAGTTGATCAAATTACTAACATTGGCAGATGTCAAATTACTTCCTGCCTAATGTGATAAAGAAAATCAAATTACAAGCCCCCCAATGTTATTAGCAGGACTTCTTGAGAAATATCCAGGAAACGAAAGGGTGCTAGGgctaaatataaaagtataaactcATGACTCAGTTTAAGTGACGGCAAGATATTGTCTTAGAAGTTGTAATGATTCTGAAGCTTATTGACATGACGTTGAAAAGTTGTGGAGTGTCCACTCAAACAGGACTATTGTCCCGAAGCATGTGTACGTGTGCGCACACACTCAAAGTCTCAACAGGGTTCCCTGGGGTTTCTCACAGTAAGCATGTTTCCTGTGTTGAGGTTTAATTGGAATCCAGCGTCAAAGATTTACTTGTTAATATGTGAATTATTGTATAAATGGATACATTGTACAatattgtaaaacaaaaaaaaataaaataagaaaggaATGAGAGa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60359 lncRNA downstream 73780 22107092 ~ 22192916 (-) True G51058
XR_004577859.1 lncRNA downstream 89365 22165739 ~ 22177331 (-) False LOC117596869
XR_004577860.1 lncRNA downstream 89365 22165739 ~ 22177331 (-) False LOC117596869
XR_004577858.1 lncRNA downstream 89365 22165739 ~ 22177331 (-) True LOC117596869
XR_004577862.1 lncRNA downstream 102272 22153348 ~ 22164424 (-) False LOC113538981
TU60485 lncRNA upstream 244865 22544227 ~ 22546490 (-) True G51169
TU60484 lncRNA upstream 266437 22565799 ~ 22566527 (-) False LOC113541574
TU60626 lncRNA upstream 306185 22605547 ~ 22608037 (-) True G51276
TU60643 lncRNA upstream 347988 22647350 ~ 22743272 (-) True G51289
TU60768 lncRNA upstream 590697 22890059 ~ 22890274 (-) True G51389
XM_026934474.2 mRNA downstream 61721 22180147 ~ 22204975 (-) True pkdcca
XM_034301397.1 mRNA downstream 143047 22035832 ~ 22123649 (-) True LOC113540944
XM_026933301.2 mRNA upstream 1555 22300917 ~ 22317379 (-) True LOC113538327
XM_026933310.2 mRNA upstream 1555 22300917 ~ 22316989 (-) False LOC113538327
XM_026944151.2 mRNA upstream 18057 22317419 ~ 22424411 (-) True prkn
XM_034302780.1 mRNA upstream 266409 22565771 ~ 22571868 (-) False LOC113541574
XM_026938634.2 mRNA upstream 266409 22565771 ~ 22571295 (-) False LOC113541574
TU60345 other downstream 165313 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 316507 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 370419 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 652429 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 1897267 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 474993 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 474993 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 1148546 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1717902 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 2153757 24453119 ~ 24651847 (-) False lyst

Expression Profile