RNA id: XM_034302761.1


Basic Information

Item Value
RNA id XM_034302761.1
length 4971
RNA type mRNA
GC content 0.51
exon number 35
gene id kif15
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33485013 ~ 33505325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgaaaaataaaatcccgTCGCGCCAATTTCGAAGTGTTTTGGTTCCGGATGGagttcttttcatttctttagctttttatttttaatttgtgttattaTTCTACAATGAATCCCAAAGGAAAAGGCTCCGGAGACACGACTTTACCTCTCCAGTCCAGCAGCAGTGATGGAGACGCCATTAAGGTGTACGTCCGCGTGCGACCTTTGACCCAGGGCACCGGGCTGACGACAGACGGAGATCGGAGTTTGTGTTTGACGGTGACCTCGGATCACACGGTGCGTCTGAACTCCAAACCCGAGCCACGAAACTTCACCTACGATCACGTGGCGGACATGGACACGTCTCAGGAGTCGGTGTTCTCGCGTGTAGCTAAAAACATCGTGGAGTCGTGCATGAACGGTTATAACGGCACCATATTCGCATATGGACAGACGGGTTCAGGGAAGACCTTTACCATGCTggggccGAACGAGCTGACGGATTTCTCTGATGAGCTGCGTGGTGTTATTCCTCGTAGCTTTGAGTATTTGTTCTTCCTCATCAGCAGAGAGGTGGAGAAGtctgCAGGAGCAAAGAGCTtcctgtgtaaatgctccttCATCGAGATCTACAACGAGCAGATCTTTGACCTCCTGGACAGCGCCTCGGCGAGTCTGTTCCTCAGAGAGGACATTAAGAAAGGAGTGTTTGTGGAAGGAGCGGTGGAGAAATACGCAGCTTCAGCCGCAGAGGCCTaccaggtgttatCTATGGGATGGCGTAATCGGCGTGTTGCGTCCACGTCGATGAATCGTGAGTCGTCTCGCTCTCACGCCGTTTTCACCATGACCCTGGAGTCCAAGGAGACGGGACAGGAAGTGGTGAACATCAGAACATCTCAACTCAACCTGGTAGATCTGGCGGGGTCCGAGAGGCAGCGAGACACACACGCCGAAGGATCACgcctgaagGAGGCGAGCAGCATCAACCGCTCTCTGATGTGCCTGGGTCAGGTGATCATGGCTCTGGTGGACGTGTCCAATGGGAGGAGCCGACACATCTGCTACCGCGACTCCAAGCTCACCTTCCTGCTCAGGgactCTCTCGGAGGCAATGCTAAGACGTACATCATCGCTAACGTCCACCCAGGATCCAAGTGTTTTGGCGAGACGCTGTCCACGCTGCAGTTCGCGCAGAGAGCCAAGCTCATCAAAAACaaggcGATGATAAACGAGGACACTCATGGAAACGTGAAGCAGCTCCAGGCTGAAGTGAAGAAGCTGAAGGAGCAGTTAGCTCTCGCTCTGTCCACTCGCCATAACATCACCGAGCTCGCGCCCGGGGGACCGCAATTACACAccgCCGGGTCTGAAGTCGAGCCTCCGTATAAAACTCGCTTCCTGCAGGCTGTACGACTGTGGAGGAGACGAGAAGACGAGAAgaagGTTCTGCAGGAGAAACTGTCTCGTCTGGAAGAGGCCTGGGCACAGAAGGAAAAATTCATTCAGTCCAACCGCATGATCCTGAAATTCCGAGACGATCGCATCGCCCATCTGAAGAGGGAGCTGGAGACGGGAGAGCGAGCGGAACCGGCACGGCAGGACCAGATTCTTATCGATCAGCTGCTACAGGAGATTAGCCTGCTCAGAcaacagGTGGAACATCACCCACGCGCGATGTGGTACGCAGCAGAGAACTGCAGCCTGAAGGAGGAAGTGCACGCTCTGAGAGCTCTGGAGTCGGTGAAGCACGCTCAGGAGGCCGCGTCCCAGTCTGAAGCTGAGCTCGAGCGGGCTTTTCAGGAGGTGTTAAAGTCAGAGGAGGGTGTGGAGGCAGCGGGGGCTCCACCTATGTGCTCCACCCCGGTTACCATGGAGACTCTGTCCTCTGTTTCCATGGAGAGGTTGAAGGCCCAGTTGTTACAGAAACAGTCGGAGCTCACTGCCGTGGTGCAGGCGTTCAACGATTACAAACAAGTCAGCAAGAAGCAGCTGCTCGAGCTGGAGTCTGAGAAACGCTACCTGGACAAATCCAACAAGCACCTGGAAAACATTTTAGAAGCTACTAAAGCTcacaccaaacaggaagtgtcgCAGCTGAACAAGATCCACGCTGAAACGATTAAGATTCTGACGACGCCGACTAAAGCGTATAACCTGAGGAACCGCTTGGTGCCCCTGTCCAGCCCGGAGCATCTGAACGGCCACAGGGGCGACTCAGAGCTGGAGGACATCGAGAGCGAACAACCCCCTCCTGCTATGAGTGAGCTGGCCTGCGAGGCTCTCACTGAGGAACTGAAACAAATGCAGGAGCAGATGACTCGTCTGAAGAGCCAGCTGGATGAGGAGGaagccaaaaacaggaagctgCTTCAGCAAATCAGCAAGCTGGAAGAGCAGGTTACTACGGCGACCGAGCAGTCCACTCGCAGAGCCGAGgacttCAGCGCAGAGAGAAGTTCTCTGATGGAGGAGCAGAAGAAGCTGCAGGAGAGCGTGAGCACTCTGGAACAGCAGCTTGCTGAGGAGAGAACGGCAGCagaggTGCTGCGTAGCGAGGTGTGTGACCTGCGGGTGGTGCTGCAGTCGTCAGATAAACAGCTGGAGGAGGTGCGgagggagcaagagagagagaacacacagcTGTCTAACAGCTTAATCAGCACACAGCTGCAGCTGGACAAAGTCAGgttggAGTGGGAGGAGCTTCAGGAGCAGCAGCGTGTGTTACAGGACGCGTTCGACACTCTGCAGGCCGAGTCTAAGTTTGAAGCGGATCAGTATCACCAACAGCTGgaggagaaaaccagagaacacaccgagcagcacacacacatcactgagttGATGAACACTCTTCAAGCTGAGAGAGTGCTGATCAGCAGTCTGAGGTCACAGCTgaaagcagacagagagaacacCTCCAAAGAGCTGCTGCAGGCTGTGGAGGAGAACTCGCTGCTCAAAAAACACATCCTGGAGCTCACTACTCAAAACcatcagcaggCTGAGAACATTAAATCTCTGGAGCAGAGTGTGAGCAGTGCAAATGCATCGATCTCCAGCCTGGAGCAGAAAATAGAGCAAGATGAAgccGTGGTGTTGGACCTGATGAAACAGACACATGATCTGCGCTCTGAACTCAGACAGAAGGATCAGAGTCTCTCACTGATGAGCGCCGACCTCAGTGACATCACtGTGAAATACGGCGCAGCGtgttcagagagagaggaaacaaacAGACTGGTCTCTCGCATGCAGGCAGAAATCCAGGAGCTCAGAGAGGCTTCAGAGCGACGCGTGGCCTCCAACCacgttgagtTGGAGCTGCTGCAGGAGGATCTGGCGTACGTCACAGAGGAAATGGAGAAGCTCAGTAAAAGTTTAGAGGAGCAAACGACAGAGCTACAGAAAGCCGAGCGTCTCAGCGCTGAGAAGGACACAACCATCAGCACTCTGCGGGAACAGctgaagcagcaggaggagcagcTCAATATGAGGACTGTAAACGGTGGTCATGCCTCTGCTACACCTAAAATGAACCCACAGacgcCTCGCACTCCGCGCAGCTTCAACACGGAGCTGTCTCAGCTGTTGGAGAATCAggagaaggagctggagagcCGACGCTCGTCCATGATGACGATGGAGGTGCTGCTGGCCGAACTCAACGCCGAGCGCATGGCCAAGAACGACGAGATCCAGAGACTcagggCTCAGCTCAATGAAAAGGAGAATATGCGTTTGGAGATCCAGACTCTACTGGAGCAGTTCTATAACACACAGAACCAACAATCTCAGAACGGCGCCACCACAGAgaaTCTGAAGGATGTGATCCACCAGTCCGTGCTGCGAGACCTGCGTGAGGAGAGGAGTGCGAAGaatACGCTGACGATGCAGCTGGCTGAAGCTCAGAAGAGtctacAGAACCAGGAGGTCACTCTGGTCCGGTCTCAGACGTGCATCCAGGAGCTGACCACTGAACTCAGGAACCGCTGTCTGGAGCTGCGAGGATTTCAGGAGAAACACAACGAGCTCCTGCAGGAAGTGGAGGTGTTGAGGAAGCAGGTGGATGACCTGGCCGAGGAGAACGGCAAGCTGCTGGGCCACCAGAACCACAAGCAGAAGATCGAATACATGGTCAAGCTGAAGAAGGAGCTCACCAAACTGCAGGAGgagaaCGAGAAACTCCGACACAAGAGTACGTCCTGAACATCGGTACTGCGTACGCAACAACAGcgtcaacatacacacacacacatctccatgCTGGACATCTCAGGAGCTTTCACACACGGTGCTAGGAATATCCCGGGACAGAAGAACACGCCTCCTGCGTGGACGAGTTTAGCGTTAACCGGTGAAATGTGCTGTAGCATGAACACATTGACTCCATGAGCTTCTCTGTCCTTCAGGTTCACTGTAACTGCaacataaagtgtaaataatttttcacacattcaggaatgtttttttttgacttgTAGAGGAACAGGAATGATCTTTGAGGCAGCTTCTTCATCACTATCTGCTCCGTTTGACTCACAAAATGAGACTTTTCGAAAAGTCACAATATCTTCATGtgattcatgtgatttttactgatgaatttaaaaatgaaatgtgaaatatttttgtgtctttATGTCTCCTGTCCTGTCCTTTTGCTGTGATCTcacagttttaatttttttttttttaaataaaaattgttatagttctcttttttcttctcgtTTTCCTTGTCCTAATTGTCCTGTATCTGTCAAATctattaaatctgtttaatctctggtctttctgtctgtataaACACATGTAGAAATGACACGTAGTccatattttttgaaaatatatttttttttattcatgattttgaacttaaataaatgaagacatTCCTTAAAGCTGGAGTTTGTAATTGAAGTACAGGAAATGCAAGATCAGATTAAAGCCAGTCATCAGATCAttcaataaatgtatatttttat

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10400 KIF15; kinesin family member 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67389 lncRNA downstream 17706 33465699 ~ 33467307 (-) True G57220
TU67500 lncRNA downstream 62539 33421824 ~ 33422474 (-) True G57317
TU67395 lncRNA downstream 73560 33410548 ~ 33411453 (-) True G57223
TU67405 lncRNA downstream 78887 33370775 ~ 33406126 (-) True G57232
TU67396 lncRNA downstream 109512 33369860 ~ 33375501 (-) True G57224
TU67394 lncRNA upstream 14301 33519626 ~ 33520877 (-) False mycla
TU67519 lncRNA upstream 30153 33535478 ~ 33535975 (-) True G57335
TU67540 lncRNA upstream 66085 33571410 ~ 33572419 (-) True G57354
TU67542 lncRNA upstream 69961 33575286 ~ 33576847 (-) True G57356
TU67554 lncRNA upstream 151669 33656994 ~ 33660021 (-) True G57368
XM_034302075.1 mRNA downstream 931 33468023 ~ 33484082 (-) False tdrd9
XM_034302071.1 mRNA downstream 931 33468023 ~ 33484082 (-) True tdrd9
XM_034302706.1 mRNA downstream 42198 33423664 ~ 33442815 (-) True lrrc9
XM_026939485.2 mRNA downstream 81289 33389493 ~ 33403724 (-) True six4a
XM_026939310.2 mRNA downstream 97194 33385114 ~ 33387819 (-) True six1a
XM_034302765.1 mRNA upstream 1769 33507094 ~ 33516686 (-) True tacc3
XM_034302764.1 mRNA upstream 3646 33508971 ~ 33516686 (-) False tacc3
XM_034302763.1 mRNA upstream 3646 33508971 ~ 33516686 (-) False tacc3
XM_034301508.1 mRNA upstream 14357 33519682 ~ 33524819 (-) False mycla
XM_034301506.1 mRNA upstream 14358 33519683 ~ 33524819 (-) True mycla
TU67506 other downstream 22671 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 55244 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 140204 33340222 ~ 33344809 (-) False slc38a6
TU67373 other downstream 385441 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 756272 32715827 ~ 32728741 (-) True G57124
trnag-gcc_5 other upstream 24602 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 60211 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile