RNA id: XM_034302764.1


Basic Information

Item Value
RNA id XM_034302764.1
length 2416
RNA type mRNA
GC content 0.57
exon number 13
gene id tacc3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33507094 ~ 33516686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcaaaacacacacagacccacagggagcgagagagagagagaagggcgCGCGAGCTCGCCATCGTGACACGTTTTTCGTTTTTTGGAACCGAAAGAAAAgcgaaaataaaacatatttctgaTCTAAACTGAGTATGAGCTCAGAGGTGGTGAACGATGAGAATCAGGGCGCTCTGCCCGCACGCAAGCGCGTCCTGTCCGAGTCTGCCGCCGATATTTTCGCTCTGGATCAGCCCACCGGCAGGCCGTCCATCCTGAGGCAGTCTCAGGCCGAGAACGTTAATAAAAACATCCCTAAAGGAGTGAAGGTGTGTTTCCAGACTCCGCTCAGAGACCCGGTGACGAGGAAGATCATGTCCCCGAGTCGCGTGGGCAAAATGGCCGCCCTCGATGACTGCACTAACGCTCTGGAGTCTCTCACGCTGAAGTCGCCCATTCCGGTCGACGTTCCCGCTAAAACGGCCACTTCCCTTCCTGACGATGACATGCCCATTCAGAGCCGAGGAGGCTACGCCATCGACTTCGACAACCTGGACTCCATCAATCCCTTCCAGAGCTGCAGTAAAATGATCCTCTCTCCACTCAAACCTGCCGCTCTGCTGTCGGACTCCCTGTCCCTGACGGAGCCGGCTCCGCCCGCCCCATCGCCCGCTCCCGAAGAGGCGGAAAAGCTTCCGGAAAAGGCCGACATGGCTCTGGATGAGACTCTCCCTTTTATCCCGTCTGTAGAGAATTCCCTGGCGGACTTATCCGCGGACGGCGCCTCCACAGACAGCACGGTGATCATCGAGCCGAGGAAAACTGCGCCCGCGGATCACGGCGCCGACGATACGGTGAACGTCGAAGTTCCCGAGCCAGCTCCTGTAGTTCACGAAGACGTCACGGATTCGCTTTTACTCCCTAAAGGATCCTACAGCATTGATTTTGATAACCTTGACTCGGTGAATCCTTTCAGTGCCGGTGGCTCAAAAATCCAGAACTCTCCCCCCGTCTCCAGGAAATCGCCCGTCCGCAATCCAGCGCCGCCTCAAGCTGAGGAGACGAGCTCAGGCGTGAAGACACCTAGCGAACGAGAAGATAACCTCTGCACCATGGAGAAGCCCAGCCTTACAGAGGCGAACGCCGACACCGCTCTCGCCTCAGCAGCGCCACCTACAGAGGCTCCCGTGGTGCTGGAGTTCAACTTTGACGACGGCGCCGAAGTAAAACGCAAACCTCCTCCCAAACGCCTCGGCTTAAAAAAGCCTCCGCTTTCCAAAACGAAACCCGACGCCACAAAACCAGCGTCTGCGTCCGCTCCAGCCGAGAAGAAAAGTCCGAAATCAAACCCGAGTCATGCGACACGGCGGCGGAGATTCCTCCAGCGAGAGGCGCTTACACTGTTGACTTTGATCAATTCGATGATCCAAACTTTAATCCGTTCGGTACGAAGGCAAAAATGGGTGGATCTCCTCCTCGCGGCGCTCCGGTGGCGAGCGAGGTCTCTACGAGTCCAGCGCAGAACCAGGAGAACCCGGAAAACGCTGTggagaaccacacacacagTTCTCCTTCCTCTGAACCCGAAAAGCCTGCAGAAGCTGAACCATCTTTCACTAAGGAAGCAGAAGAACCCGAGCCCTTACTGTTTGCCGAAACCCACCAGCCCCCCGCTCCGGTTATTCCACAGCCACAAAAGACGGAGGAGTCGGCTTTCCCCTGCGCTCCGATCCACAGTCGCGGAGTTTGATGCGGCTGCAGCCGATGACGAGTTTGTTCCCGGCTCCATGTTCATGCCGAGTGACCTGGATGGACAGATCGATTATCTGGAGCAGTTTGGATCCAGCACTtttaagGAATCGGCTCTGCGTAAGCAGTCCCTCTATCTGAAGTTCGACCCTCTGCTGAAGGAAAGCCCGAAGAAAGCCACAGTGGACAGCTCGAGCTTCGGGTTCAGTCTGCCTCGTCCCTCTTTGGCCATCCGgatgATGGAGGCTGcgaggtcagaggtcaagcaGAAATCTCAGCAGGAAAGCACAAAGCTGCTGGAGGACTTTCCTCCAccgGACCCCGCCGTGCTGGACCTGCTGGTGCCGACGCTGAAGCAGACGCAGAGGAGCGAGGACGTCATCGTGGACATGCTGAAGTACACGCAGAAAGACCTGGATGCCGCTCTGGAAAAGACCCGGAAACAGGCAGAGGAGAAGGAGGTGGACCTGAAGGCCCAGATTGAGAAGATGACTCTGGATAATCAGCACATATGGTGCTGATCGTGTCGGAGTTCGAGGCCGTTATTGCTCAGATCACAGCCGAGCACAAGCAGAAGGACGAGCTGGCGCAGGCCGAGCTCAGCAGAGTGCTTCAGGAGAAGCAGCAGCTGGCTAAAGAGCTGAGCGACATGGAGCGCTCCTTCTCCGACGTCGTCAAGCACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67389 lncRNA downstream 41664 33465699 ~ 33467307 (-) True G57220
TU67500 lncRNA downstream 86497 33421824 ~ 33422474 (-) True G57317
TU67395 lncRNA downstream 97518 33410548 ~ 33411453 (-) True G57223
TU67405 lncRNA downstream 102845 33370775 ~ 33406126 (-) True G57232
TU67396 lncRNA downstream 133470 33369860 ~ 33375501 (-) True G57224
TU67394 lncRNA upstream 2940 33519626 ~ 33520877 (-) False mycla
TU67519 lncRNA upstream 18792 33535478 ~ 33535975 (-) True G57335
TU67540 lncRNA upstream 54724 33571410 ~ 33572419 (-) True G57354
TU67542 lncRNA upstream 58600 33575286 ~ 33576847 (-) True G57356
TU67554 lncRNA upstream 140308 33656994 ~ 33660021 (-) True G57368
XM_034302762.1 mRNA downstream 3646 33485013 ~ 33505325 (-) False kif15
XM_034302761.1 mRNA downstream 3646 33485013 ~ 33505325 (-) True kif15
XM_034302075.1 mRNA downstream 24889 33468023 ~ 33484082 (-) False tdrd9
XM_034302071.1 mRNA downstream 24889 33468023 ~ 33484082 (-) True tdrd9
XM_034302706.1 mRNA downstream 66156 33423664 ~ 33442815 (-) True lrrc9
XM_034301508.1 mRNA upstream 2996 33519682 ~ 33524819 (-) False mycla
XM_034301506.1 mRNA upstream 2997 33519683 ~ 33524819 (-) True mycla
XM_026939489.2 mRNA upstream 46092 33562778 ~ 33570236 (-) False LOC113542143
XM_034302922.1 mRNA upstream 46092 33562778 ~ 33570194 (-) False LOC113542143
XM_034302923.1 mRNA upstream 46092 33562778 ~ 33570184 (-) False LOC113542143
TU67506 other downstream 46629 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 79202 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 164162 33340222 ~ 33344809 (-) False slc38a6
TU67373 other downstream 409399 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 780230 32715827 ~ 32728741 (-) True G57124
trnag-gcc_5 other upstream 13241 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 48850 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile