RNA id: XM_034302768.1


Basic Information

Item Value
RNA id XM_034302768.1
length 9526
RNA type mRNA
GC content 0.51
exon number 36
gene id pcnx1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33663814 ~ 33692927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagcagcagcagtaagagcaggaggaggtggaggaggaggaggtggaggaggaacGCAGGCTGTGCACAGATGGAGCGCTTTATTTTGCAGGCccgagtcagagtcagagtcagaggcGAGGCGGAGCAGCTCCGGGACGCTGTCAGTGCGCTGAAGGCGCAGGTTTAGCGGTTAAAGGCTGCGGATCGGAAGCATGGGCTCTCAGACGCTGCAGATCCTCAGGCAGGGGGTCTGGGCTTCCGTCACGGGCGGATGGTACTACGACCCCCATCAGAACACCTTCGTCAACGCGTTACACCTCTACATCTGGCTCTTCCTATTGTGTTTCCCTTTCACTCTCTacatggcccTCCCCCCCACCATGCTGATAGTGGGCGTGTACTGTGGCGTGATCGGCGGCGTGTTTGTGCTGTTGAAGGCGGTGAACTATCGGCTCCACACGGCGCTGGACGAAGGGGAAGTGATCAACGCAGAACAGCAGCGagacgccacacacacacacccagacgaGTCCAGCGGCTCCGGGGATCCTGGAGGAGGAATCGAGTTGGCTGATTTTGTCCGAGAGGAAACTCCACCAGTCGCCTGCAGCTCGTGCAACTCCTACACTGGCATGGACTCCAacctccagatcactTCCTCTCGTGGAGGTCCAGCCGCAGTAAAAGctGATGTTGGAAAGACCTCAGATGACCTCAGTCTGAGTTTAGCTCCGAGCTGCAGCCAGGAACAAGATCTGACATCAGAGCCTAAGATCTACGGCCTCATCTCCAACGACTCCTTTGCCTCCATGCAGCCTTCCACCTCGCTGGCTCAGGACCTCTACAGCTCCACCCCTCACCCTTTCAGCCAATCACTGTCCTCCTGCGACACAGAAATCCCCGCCCACTCCCAGTCTTTCAGGAAAGACTCGTCTCGTCCCCGTGGCCTCCCTCGCACTTCGAGCTCGGCCTTTCCCGATCCTTCCATCCCAGACTTTGGCCTCTACCCCCCTTCCCGGCGTAGTGGACTCGACCCGGTGTGTGAACTGGACACGCCCCGGCCACAGGGGGCGCCACAGAGCGCGGACACGGCCGTCCCCTCCACGTCAGGACTGGACTGCTGTAAGCAACATAAAAGGGAACGGCGCAAACTGGCCCGGTCCATTTCCAGAGAAACGGGGGACGAATGTCAGGGTGAATCTGGACTGTACCAAGTGGAGGGTTTTCGTGGGGGGATTTCAGGTGGAAGCAGGAGGAAAAGACGAGGGGAAAAAAGCGTGGAAAGTTTGCGAAGCCTGAGCACACGCAGTAGCGGCTCGACAGAGAGTTACTGCAGTGGGACGGACCGTGACACACACAGCACGCTGAGTAGTCTGCATAGTGAACAGACTAGCTCCACCCACGTCGAGAGTCTCATATCACTCTCGTTGGACGAGGGCGGGACAACGGAACCTAGCATAACCTCAGGAGAGGGCAATAAAAACCCTCATGCTAATGAAATTAGCCCAAAAGCAGTTAATGCTAATGAACCCACAACTCcaaaaaacacatcacaaacCACCAGCCACGAAGGGGAGGAGCTTAGAAAGGAAGAGAGTGGGGTAAGGACGAGCCCAGAAGCCTCTGCAGACTCCACCCACCTCTGTAAGGAGGCGGAGCATGATGACGCTAAGCCCAAATCAGCCAGTCACTCCGATGCCAGCCATAGCGGGCGCCGACGCAGCGCTAAGAAACGCGCTAGCAGTTTTGATGCTGCCCGTTACCATGACTACACCTGCTTCCGCGGCATAGCGAAACCTCGCTCGGCCGTTTTTGCTAAAAACGACGAGGACTCAAGCGACTTGAGCGAGCTCAGCCACGCCTCCAGTCTCAACTCCGCCCATCGGGTGGAGCTAAGCCACGCCCCCGGTACGTCccagaagaaggagaaagagaaggagagagagagggggaagaaGCGAGCGTCTCGGCGTACAGCCAGCACAGGAAGTGCCAAAGTTCAGCTGCGTAAATGCGCCAACGAGCCGCAGCACCTGGGGGCGCCGGCCGACCCTCGACCCCTCAGCACCTCCAAATCCGACCTGGAGGCCAAAGAAGGAGAAGTGCTGGATGCAGCGTCGCTGCTGGGACGAGCCAGTCAGCTGGAGTCTGTCACCCGCTCCAGGAACAGTTTACCCTGTCCAATCAGCATCACCGACACGCACGACCCGGCCagggCGGCGGTTAACGAGGACGGCGTGACGTTCAGGAGAGAACGCAGCACGTTTCGCCGTCAGGCTGTACGGAGACGCCACAACGCCGGGAGCAACACCGCCTCCATCATCGCATCACCGCTCAGtcTTCAGGAAGCGCTCAGTCAGGTGTCTCAGGCTTCTTCTGGGtcacaggtcaaaggtcagatgAGCACTAGCGCCTCCCTGCTGGTCAGGAATGGGAGTGCACAGCTGGAGGGTTTTCAGGATAAAGCGTCCACCGTCGGCCTGCATGAAGACTTCGGTAAGCTGACTCCCTCTCTGTACGAGGTTGGAGGATGCGATGTGTCTCTCGTTAACTTTGAACCTGCGACAAGACGAGCATCCAACAACGTGTGGGACACGGATTCTCACCTCTCCAGTTCTACCTCAGTTCGCTTCTACCCTCATGACCtgatcCGTCTGAACCGTCTGCTGTCGATGGACACTGAGCTGTTGGAGCAGGACGGTGATGTGAGTCCTGACCTGCAGGAGGCGCCGCACAGCTCACACGAGCCgacgcacaaacacactcacacacactcgcacacacacaccaacacacacaaggCCAAGCAGTACTACCGCTTCTCCCTGCTGCCGTACCTGTGGGTGGGGCTGCGCTTCGACAGACTCACGCTGCTCGCGCTGTTcgacaggaacCGTGAGGTTCTAGAGAACGTTCTGGCCGTGGTTCTGGCGGTGCTGGTGGCGTTCCTGGGCTCGGTTCTGCTCATTCACGGCTTCTTCACCGACATCTGGGTCTTCCAGTTCTGCCTCGTCATCGCCAGCTGCCAGTACTCACTGTTAAagAGTGTTCAGCCAGACTCGTCCTCTCCTCGACACGGTCATAACCGGATCATAGCGTACAGCAGGCCggtgtatttctgtgtgtgttgtgttctgaTCTGCGTGTTCCACTACAGCAGTGTGAGCTCCAGttcgaacacacacacgctgtacgGAGTCACACTCAGCTCATCACTGCTGCTCGGCGCCACACGCGACCTCGTCATcgtcttCATCCTGTGTTTTCCTGTCATCTTCTTCGCCGGACTCCTCCCTCAAGTCAACACGTTCCTCATGTACCTGTTTGAGCAGATCGACATCCACGTGTTTGGAGGAAACgcgtgTACCAGTCTTCCCTCGTCCATATACAGTGTGGTGAGGAGTGTGGTTACCGTGGCGATGCTGTACGGATTCTGCTACGGATCCCTGCaggagccgTGGGACCCTCAGCACATCCCGGtgctgttctctgtgttctgcGGTCTGCTCGTCGCCGTGTCCTATCACCTCAGCCGCCAGAGCAGCGACCCCACCGTCCTCATCTCTCTGGTCCAGGCGAAAGTTTTCCCGAGCGTGGCGAAGGATCAAAACCCGGAAGATCCTCTTTCTGAGGTGCAGGACCCTCTACCAGAGAAACTCAGGAACTCTGTGaatGAAAGGCTGCAGTCTgatgtgatcatgtgtgtgCTCATCGCTGTGCTCTACTTCGCCATTCACGTCAGTACCGTCTTCCTCGccctgcagCCGTTCCTGAGTTATGTGCTGTACGGGCTGGTGGGTGCTGTCGGGTTCTTCACGCACTATCTCCTGCCCCAGATGAGGAAACAGCTGCCCTGGTACTGCTTTTCCCATCCGCTGCTCAAAACCAGAGAGTATTACCAGTTTGAGGTGCACGgtgcagCTCATGTGATGTGGTTCGAGTGGCTCCACCTGTGGCTgctgtttgtggagaagaacGTTCTTTATCCTCTCGTCATTCTGAATGAACTCAGCAGAAGCGCACAGGAACTCGCCAGCTCCAAGAAACTCACCACAgaggtggGAGCGGTGGTGTTGAGTGTATCAGGGTTGAAGTTGTTGCGTTCGTGCTTCAGCAGTCCGGCCTCTCAGTACGTCACCGTGCTCTTCACAGTCCTCTTCTTCACCTTCGACTATCAGCACCTGTCAGAAACGCCGCTGCTCAACCTCTTCATCATGTCCATCATCTTCAgcaaggtgtgggagctgCTGAATAAGCTACGCTTTGTTTACACCTACATCGCTCCGTGGCAGATCACCTGGGGTTCAGCCTTCCACGCCTTCGCTCAGCCCTTCGCTGTACCACATTCGGCCATGTTGTTTGTGCAGGCGATGGTGTCGGCCATTTTCTCCACTCCTCTCAACCCGTTTCTGGGCAGTGCCATTTTTATCACGTCCTACGTCCGACCTGTTAAATTCTGGGAGAGAGATTACAAcacaAAGCGGGTGGATCACTCCAACACCAGACTGGCATCTCAACTGGACAGGAATCCAGgttcgGATGATAACAACCTGAACTCGATCTTCTATGAGCACCTGACTCGTTCTCTGCAGCACTCTCTGTGTGGGGATCTGCTGCTGGGCCGCTGGGGAACCTTCAGCACCGGAGACTGTTTCATCATGGCCTCTGATTACCTCAACGCCCTCGTCCACCTCGTCGAGATCGGCAATGGCCTCGTCACCTTCCAGCTCCGCGGCCTCGAGTTcagagGAACGTACTGCCAGCAGAGGGAGGTGGAGGCCATTACGGAGGGCGTGGAGGAGGACGagggctgctgctgctgcgatGTGGGTCACCTGCCCCACCTGCTGTCCTTTAACGCTGCGTTCGTGCAGCGCTGGCTCGCCTGGGAGGTCCTGCTCTCCAAATACACCTTACAGAGCTACAGCATCACGGAGAACAGCGCCGGAGCCATGCTGCAGGTCTACGAGCTCCGCCAGATCCTCACCACCTACTACGTCAAGggaataATTTATTACGTGGTTGCGTCTCCGAAGCTGGAGGAGTGGCTCTCCAATGACGCCATGATGGAAGGGCTGAAGAACTGCAGCGAGAGGAACTACGTTGACCTTGACCCGACCTTTAACCCCAACATCGACGAGGACTACGACCACCGACTGGCCGGAATCTCCAGAGACAGTTTCTGTTCTGTTTACCTCAGCTGGATCCAGTACTGCAACTCTCAGAgacagaagCCGTTGGAGTGTGAGAAAGACTCAGCGTTGGTGTCTTTGTGTtttggtctgtgtgtgttggggaggaGAGCGCTCGGCACTGCAGCTCATCACATGTCCAGtAATCTGGAATCATTTCTCTACGGCCTCCACGCCCTGTTTAAAGGAGATTTCCGGATCTCGTCTGTGCGGGATGAGTGGATTTTTGCAGATATGGAGCTGCTCAGGAGAGTCGTCGTCCCGGGAATACGCGTGTCCCTCAAACtgcaccagGATCACTTCACGTCTCCGGATGAGTATGACGACCCGTCGGTGCTGTACGAGGCGATCTCGTCTCACGAGCGGACGCTGGTGATAGCGCACGAGGGCGACCCGGCGTGGCGCAGCGCCGTGCTGTCCAACGCTCCATCACTCCTGTCGCTACGCCACGTCCTCAACGAGGGAACCAACGAGTACAAGATCATCACGCTGAACCGCAGATACCTCAGCTTCAGAGTCATCAaggTGAATCAGGAGTGTGTTCGTGGCCTGTGGGCGGGGCAGCAGCAGGAGCTGGTGTTCTTGCGGAACAGGAACCCGGAGCGCGGAAGCATCCAGAACGCCAAGCAGGCGCTGAGGAACATGATCAACTCGTCATGTGACCAGCCGATCGGTTATCCCATCTACGTCTCGCCCCTCACCACCTcctactgcaacacacacacacagctcacacacacactgggcgGAGCCATCAGCATCGCCAGCATCCGACACTTCATCATCAACACCTGGCACAGgttgCGTAAAGGCTGCGGAGCGGGTTGTAACAGCGGAGGCAACGTGGAGGAGTATGACATCGGGAATTCTGGGAACGCAAACGACACACACCACAGAGTGACcagcattcaacacacacacacgcctcactcactggGAACCAGTCAGAGTTCTCAGTCTGTGCGTTCCTCTCTGGTGCGTCACTCTCCAACTCGTTCGTCCGTGGCGAGTCAGTCGTCATCGCTCCGTTACAACAGCAACGCAGAGCCGACTATGTGCAAgcgacacacactcacacacacacacacactcgccggcCTGCtcgaccatcatcatcatcaccaacagCCCAGGAGAGAGGATATCTCCTACAGAgtacagatagTGGATGTGAATCAGGTGTTGGATGTGATTAATCTGTCGAAGCGTAAGGAGCTGCTGTGGCCTGACGAGTCGATGAGGTTGAGGGCGGGGCCGAGCTGCTGGAGAGACTGGGGCCCCCTGGAGGGCATGGAGGGACATgTGATTCACCGGTGGATGCCTTGCAGTCGTgaccctctctctcgctcccccATCGATAAATCCATCCTGCTGGTTCAGGTGGATGATAAACTGGTTCCCATTATAGAGACCGGAGTGATGGAACTGGGAGCAgaagtgtaaacacacacacacacacgcacacacacacacacacaacaggctGATGgcaaagacacacagaaagCCAGGGACAGGTACGATCTTAgatagtaacacacacacacacacacacacacacacacacagattcgcACCTCGTCCACACGTTAAAGGATATTTTGGAAAAGCGTAATCTTCTCTCTGGGTTTTTTGTCGTGTTTTATGTCGCAGATGAACACTGTGCAGGAGAGATTTCACACGTTCAGTAGCAGACTGAAACACAGGTGACGGAAAAAACGCAGGAATACTGACGCTGAATCTGATCATAGTGGCCTTTTAACATTTTCCTCATCTTCTCTCATCGTCTGTTAGAGAGACGTGTAAGACTGCGGTACGATAAAGTGGAGCTTCTGGTCTAGACGTTACTCCCTGTACGTCACAGAAACATCCCCTGGTACTGACCTTCCTACCTTTTCACCATGGCAGgaacattttttctttacttttctaaACACAGCTCACTGTTTCGGCCACGGACACCATCCTGGCTCACATCTCATCCTGTCTGTGAATCTGGAGAACTCGGAGCGTGTCGGATTTATCCAGAGCAgctagcgtgtgtgtgtgtgtgtgtgttcgcgtgtgtgtgttcttatgGATCTAGTTCACCAAGAGTCTCTCTTCCTATAGATCTAGAGCAGCTCTAGTGGTGGTTTGTTCTTACGGATGTATTCTGCATTCGGCTTGAGGTCATAGTAAGAATTTCCAACGCTCCCTCAACTCGGAATTTCTGctctcctcaaccccgagttcagcaagtgacatcaaatcaacatggccgctcagagcctcagcagtaaacacagcagcacttcttacctttatatgagttatactgtatatacacgcATCAGCTTTAGATCAGATATGACTCATCGCAgttaccaaaaacaaacaaaacacaaacagcgAGGCGTCCGTGGTTTTTTCCCCCGACTCTGTAGCTCCAAAGTACGGACGTTGGAAATGCCGTAATTCCGAGCTCGGATTTCTCGAGGTAAGAGGAAGCAGCGCTAGTGcagaatgtgtgtttttgtggttgTAGAGTTTGAGTGTTTGTTCTTCTTTATCTAGAGCAGCTCTGTAGACGCTGATGGAGTTCGGGATGTTTTTACGACAGGGAGAAAACGTTCAGAAGATACGAGAATAAATCTAACTATCGAACGTGGGTTCTGTGTCTTCGCTAATAACAGCTTAGATGACGagtttacagtttaatttagctttttttaatgtttttttaagattaatGAGTGAAGGTCTTGATGTTGATGCACTATCGCCACCTACAGGACAGTCTAAAGTACATGTTATCGTatggtgattaaaaaaacaacaacagagagaatttttttttaaaaaaagagtattttctgaaatatcagTGTGCGTGTGGACGAGGCCTCGGTCCTGCCTGTCGCTCTGCGTCACTCAGACATGCTGCATGACGGATCACACTGCGGTAAAGCTTcgagttcttttctttttgtttcttttctctgttttttttctgagcagTGCCGAAGCTTATAGCTGACACTTTCCTGTAAATCATTCTGTGTTTATCATGATCATAATTCACTCTCAGTGCTCTGTAAGTCCTTTTATAGACGTTCTTTTATATTCATAAACCACACAGCACCACTAACAGGACAAACACTAAACTACGCTGCGCCTGTAGGGGGCGCTGAGGGGAGCCTTTTACATGCGGAAGAGACAAATGTCTGATATATTAATGCAACTTATACAACGATGCAGCGTATagactatattattattattattattattattattattattctgttttttaagGACAGGATTTAGGCGAGCGCGTCTCAGACTCAGAGAtaattatatttctgaaaatactttaaaaatattgtgtgtatCAGACAAGTGTTTATTCAAGCCTATATTTTGGggcttttttttgcataaatatatataatgtcaccACATGTTTACAGATCATTAAGAACTTTTATTACAGCATTATAGTGTTTACTAAGATATAAAGCATTATAAGCAGTTATGTTGATTTATGAATGTGCTTTAGAGAAAGTGTcagtttttgtttgatttctaTGCATTTCGTCAGGATTTTGactttcttacacacacacacacacacacacacacacacacacaatcatggaCATTTGTTTCCCTTGTTTACAATGacgctttaatttttttaattgatttttttagtaTTCTGCCAAACGTGTTCTCCACACAGACGATAATATAAAAAGATGTTATTATTAGGATCATTTGTATTATAAACGATGATATTTAAATAGAATAATTTGCTTCCTTCAAATGAGTGTTTGgggtttattttttagtttttttttaaattaatgattcATTcgtcatgatttattttttttaatgaatgaagaaacagTTAGGGCGAGTTGCACTATGGATTTATTTTGTACgatgtgtttttgatttacAGCGATGCACTACAGTCTTCACGTCGTTTCAcgccttttatttattaaacacgATTCGACTCATCATGCCTTTTGGGGAAAATGCAATCAtgtgggttttttatttttattttctgcttttctcttcaAATGATTTTTACtgaatatataattgtatataaaattattattattactattattattattattattatacatgaGTGTAAAGAAGGGACTTGCTCTGAATATTTATTACTGTGCTTAGACATTTTGTTACCTTTTTCATTTACGCTATATAAAATTAAAGgttattaaatgtataaactgCCCGTGGGTTAAAACGGAGCCGCGCTTCTGATGGACTGTTTCCCTGTTTAACTGAAAATCTTTTAtaagatggaaaaaataaataaatgaatttga

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67554 lncRNA downstream 3793 33656994 ~ 33660021 (-) True G57368
TU67557 lncRNA downstream 3793 33656994 ~ 33660021 (-) False G57368
TU67542 lncRNA downstream 86967 33575286 ~ 33576847 (-) True G57356
TU67540 lncRNA downstream 91395 33571410 ~ 33572419 (-) True G57354
TU67519 lncRNA downstream 127839 33535478 ~ 33535975 (-) True G57335
TU67569 lncRNA upstream 8294 33701220 ~ 33762528 (-) True G57379
TU67568 lncRNA upstream 9579 33702505 ~ 33704326 (-) True G57378
TU67589 lncRNA upstream 35330 33728256 ~ 33737485 (-) True G57390
XR_004577865.1 lncRNA upstream 68592 33761518 ~ 33763761 (-) True LOC113541873
TU67602 lncRNA upstream 68691 33761617 ~ 33763623 (-) False LOC113541873
XM_034303179.1 mRNA downstream 6944 33645758 ~ 33656870 (-) True lgmn
XM_026939302.2 mRNA downstream 19596 33610457 ~ 33644218 (-) True si:dkey-157l19.2
XM_026939301.2 mRNA downstream 19597 33610457 ~ 33644217 (-) False si:dkey-157l19.2
XM_034303178.1 mRNA downstream 19646 33610457 ~ 33644168 (-) False si:dkey-157l19.2
XM_026939043.2 mRNA downstream 71007 33587893 ~ 33592807 (-) True LOC113541868
XM_034303125.1 mRNA upstream 1275 33694201 ~ 33698292 (-) True med6
XM_034302939.1 mRNA upstream 71897 33764823 ~ 33769298 (-) True LOC117596872
XM_026939141.2 mRNA upstream 81630 33774556 ~ 33776425 (-) True LOC113541951
TU67534 other downstream 93596 33565536 ~ 33570218 (-) False LOC113542143
trnag-gcc_5 other downstream 133817 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67506 other downstream 201472 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 234045 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 319005 33340222 ~ 33344809 (-) False slc38a6

Expression Profile