RNA id: XM_034302774.1


Basic Information

Item Value
RNA id XM_034302774.1
length 9824
RNA type mRNA
GC content 0.45
exon number 22
gene id usp54a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10165718 ~ 10233081 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTGTTTCTGGATCACCTGGAAAAACTTGCATGAAGACTGCTGGCTGGTGACACACACGAGACAGCTGCTAGACGCTGATCACCTGCCAACCTGCTATCTGTTGAAGTGTGAATATTCACACCCTGCTGATGTGTTTACAAGTGAGGGAGAGACAAGACGCTGACCTCTTCTCCCACAAAAATATACTGGAAATTCCAGCGGCCGTTTCGGACTGTGACGGCCAAAGTGGAGATTAGAACACCCCCCACAAACCTGAGACCCACTGCACAAAAGTCTGTGAGATTCACAAACAAGGCCTCAGAGGTAGGGTGCAGATGAGAGAGGTGTGAAAAGTAGAGGACGAGTGTGTAAGTCGGCCTGGGACAACTCTATTgaaattcatgatttttttccccctacccCTTGGTGATGCTTTATAAGCCTGAAACTCAGAGCAAGCCAAGGAATTAGGTCATGCTAGCCCATGAAAGAGCTCTTTTTGGACATTTTATTCTCGTCTTGTCTGTTTTGAGAGTATGACCCTGTGGTTGGTGTTACTGGGACAGACTGGTTACTGAAAGCCAATTCCACCATGTCCTGGAAAAGGAACTACTTTGCGTCAGGCAGCAGTGGGCTGCAGGGCATCTTTACCCCACGCACCATGACCTCCATCGCTCCCAGCAAAGGGCTCAGCAATGAGCCAGGACAGAACAGCTGCTTCCTCAACAGCGCTCTGCAGGTCCTCTGGCACCTGGATATTTTCCGCAGAAGCTTCCGGCAGCTAACCACTCACAAGTGCATGGAGGACTCTTGCATCTTCTGTGCTCTCAAGAGCATCTTTGTGCAGTTTCAGTACAGCACAGAAAAAGTGTTGCCCTCTGACGCTCTGCGAACGGCTCTGGCCAAGACCTTTCAGGATGAGCAGCGCTTCCAGCTGGGCATCATGGACGACGCTGCTGAGTGCTTTGAGAACATCCTCATGCGTATCCACTTTCACATCGCTGATGAGAGCAAGGAGGACATCTGTACGGCAAAACACTGCATTCCACACCAGAAGTTTGCCATGACGCTCTTTGAGCAGtgtgtgtgtgggagctgTGGGGCGTCATCAGATCCTCTGCCCTTCATTCAGATGGTGCACTACATCTCCACCACCTCTCTGTGtaacCAGGCTGTAAAGATGTTGGAGTGCAGGGAGAAACCAACTCCTGACATGTTTGGGGAACTGCTGAGAAACGCCAGCACTGTGGGAGACCTGCGCAACTGTCCTGGTAATTGTGGAGAGAAGCTCCGTATTCGTCGTGTGCTCATGAACTCTCCTGAGATCATCACCATCGGCCTGGTGTGGGACTCGGAAAACTCTGACCTCGCCGAGGATGTCATCCACAGTCTGGGCACCATCCTGCGTCTCGGAGACCTCTTCTCCAGGGTGACGGAGGAGAAGGCCAGGCAGGCAGAGCTCTACCTAGTGGGCATGGTGTGTTACTACGGCAAACACTACTCCACCTTCTTCTTCCAGACCAAGATCCGGAAATGGATGTATTTCGATGATGCACATGTGAAAGAGaTCGGGCCGAAATGGAGGGATGTGGTGTCTCGTTGTATAAAGGGCCATTACCAGCCACTCCTGCTGCTCTACGCTGACCCCCGTGGCACACCCGTGTCTGTGCAGGACCTGCAATCTCGTTTGGACCTTCACCAATACACCAAAACCTACTACGACAGCGAGGACTCTGgTCGTGAGCCGTCTATTTCGAGCGACACACGGACAGACTCGTCGACAGACAGctacagctataaacactcccACTCGCACCACGAGTCCATGGCCTCACACTTCTCGTCAGACTCCCAGGGAACCATCGTGTGCAACCCCGAAAACGCCGCATCACACAGCAGTCTGGATACTACAGGCCCTTTGACTGACAGTGAGCCTGCTCAGCGTCACACGCCTAAAAAAAGTGGGACCACAGATAGGAAGAGTGGAGTCGTGGACAGGAAAAGGAGTACCAGCCGACCCCGTCGATTTGATGAGAGAAGTCGAGCCTCAAAGACTGATGAGGTGTCTTCTGCAGGATACCACAGTGAGGGTGAGACCCTGAAAGAGCAACAGGTCCCTCGGGGCACTTCTAAACCCTGCTCGAGCCGTTTGCGAGACTTTAAGGAGAGCATGAGCAGCATCATCCTGAACCGGCCGCTATCCGCCGACAGCACTAGCAGCGAGTCCAGGTCCAGCTCCGGTGGAGGACGCTACAGGCCAGCCTGGAAACCACGCCGAGACACTCTCAACATCGACAGCATCTTCAGCAGAGAGAGACGCCGGCTGCAGGCCGGCTACGCTCCATTGGGCACTGTGTTGCCTGAGGATCCCAGCCACCAGGGGGCACTGACAGGCTCACTGGATCAAATGAGTTTTGGTGCCAGTTCTTCATCTAGGACGCTACCATCAATTCAGGGCAAGAGGATGGAACCTCCTCGGCTCATCCAGAGGATGGAGAGTGGGTATGAAAGCAGTGAGAGGAACAGCAACAGTCCTGTGAGCCTGGACATCCCCATTAATGAGGGAGCTGTGAATGGATCACACAGTGTAAAAGACGCAGGTTTGATGAAGCCACCCTCTGGTGTGGGCCCTGCATGGAAGAGTGTACAGAAGTCGAAAAGCAGCAGTTCCCTCCTGCAGGATGTCAAAGCCTCCATCAGAGGAACCAGTCATATGAGTTTAGCCTCAGAGGGCCGAAGCGAGCTGGACGAGCTCCAGGAGGAGGTGGCACGCAGAGCAAGAGAGCAGGAGCTGCagaggaggaaggagaaagagaaagaagcagcTATGGGCTTCAACCCCAAACCCAGCAAGTTCATGGACCTGGATGAACTGCAGAACCAAGGTAAAGGGGACGGCTTTGAGAGGTGTGTGCTGGACGCCGAAGCTCTGTTAGATCAGTCTCTGAGACTGGAACAGGCAGGCGAGGTCGCTGCCGCACTCTCTGTGGTAAACGAAGCCATGTCCAAACTCAGGCATGCCTTGCATGAGGGCAGTGCTAACGGGCAGGGCAGGACAGTGGCTGAGGCCCGACTACAAAAGTGTATGAGGAGGGGGCGAGGCCTGCAGCAGCGCATGCAGCAGCaggagaagcagcagcagcagcagcagcaagaggaggaggagagggaggaagagCAGGAGAAAAAGCTGCCTATCAGtgaaCAGCCTGTCAAGATCCAAATACTTCTGACAGATGCTCAAGAGAAGGTTGTGGATGCGCTCTCAGAAGCTTCCTTAGGCCCACCATTGTCATCCCCCATAATGCCCCATTCCCCTACTCCATCCACTCCTGATCTCTCCCACTCCTACTTCAGAGAGAGCCCTGAACATCTTTCATCCATCGATAACAGACAGCATCAGCACTCTCACTCAGACTCACAGGAGCGTTCCCCTGCCTCTGCCCGCACAACCTGTAAACCCAGTGCCAGCTCTGTGTCTATGTTCACAGTAAACGGCGCTCCCCAGATGCCTTTGCCAGCCAGAGACAGACCCGAATCTCACACGCATGGGCACGATCATCACCCACCTGTGTCCCGGAGCTTCAGTGTACCTcgctcttcctcttcctctgacCACTACAGCTTAGAGGAGAAGCCGCAGATGCTCCACTCACAACAGTCATCATTCTTCAACCCTCCGCCATCACAGCGCCCCAATACCACTCCACCTATGCAGAGGTCCATGTCATCTTCACCTTCATCCCCCTGCCTCATGCGCCGCTCCACCTCACCGGCCAGGCCCATGCCTGTAGAGCGCTGGGCTGAAAACGTCACCAGATACTACAATTCCCAAAATGCTTCGCAGCCTTGTGGCTCGCCCTGTGAAGAGTTGTCTGAACTCGACTCGCTCTACAGAGCCAGCTTGCGGGCTCCCAGCAAACCACGAGGCTCTTGCGGGCCCAGTCCACACCCCACCGGGAGACAAGGTCCTGCTGCAGCACGCAGACTCGCATCTGGACACTCAGGCTCACTTGGCCGCTCCAAAACACCCACTGCTGAGATCGAGAGGAGTGCTTACAGGACACCAGAATACATCAGCACTCCTGCACACAGAcctGTTACGCCTACGGTGTGTGACGTACCAGTGGGTGAGGATCAGATGTACAGTGCTGAGAATCTGCGTCGTATCGCTCGCAGTCTGAGTGGCACCGTCATCAGAGGACGAGCCGAAAACCTCGTTCCTACTCGCAGCTTTGATTCTCCTGCTTCGAGAATTAAGCATGTGGACCCTCGATTGAACCCACGCCACTCCAGCAACTCCCTGCATGCCGCACCCGTTACCCACAATCCTTCAGTTTTCACCCACCACCCTGAGCACCAGTACCTGCACCCACCTCAGCAGCAACCTCCCCCTCAACCTCCGTTGCAGCGGCCCACTCGAGGACacccagTGTCTGCAGGAGATCCCCACAAAGTCGACAGGTTTCTGGCTGTGCTTGACCGGGGTGAAGCTCTTGCCCACAACAGCTCCCACAGTGTGGCGATGAGCTACGGCACTCTTCCTCGGGCGCCTCGGAGAACGGCTCCTTCTGTGCCGTCCACGCCTCAGGCCAGAGTCGGACTAGCTGCTCGCCCTGAGGCCTGGAACTACACAGATCCCCGCTATGCCACCCTGGCTCACTCAGGCCGCTCAGCGCCTGCTAGCAGACCTGTGGACATTTCTCAGCACCAACCTCAACGTGCCAGCTTACCCAGACAGCCACTGTCTGTGCCCACTGCTCAGCCCATGCGTATGGATATGCCACCAGAGGGAGTCTGGAggacttctccttacagaacgGGTCATCCGGATGGCCAGGCGTTCAGAGCCCAACGTGGTTCCCACATGCAGCTCTGTTCCCTGTGCCAGAAGTCTCCAGCTGAGCCCATGGGCAAGTACTGCCAGGCCTGCATTGCCTACAGAAATCGCTACAGGCAGGCCAACTAAGCAGAGTGGCGCACCACTTCATGGAAATGCCAGCTTCATGTGCATGATCACttctcatacatacatacatgcatacatacatctACATGAGGATGAGTGAGAATGAAGTCATACACCAGcccacttctttttttttttttttttttccccccacttacTGCATTCATCTCCTTCAACCTGCCCTGTTAGTTGAGTcctacatttacacacttttttgttgATGAAGAATGGCCTCTAACTGAAGGTGTGATGCTTCACATCTGCACTGTGCGTGTCATGCCGGCTGAAGACTGTTTTAGACTCTGGATTTAGACTTCTTGGTTGTGTTTTATCGACTTAACCCAATGGGAAGAACTTAATCCATTCCTTGAATGACCTGCCAATGTGATTGGTATTTAACTACAGTGTTTTGGTAAGAGTGAATTTTTTATGAGGACACGAAGCACAAATTCAAGACAAGACTGAGACAGAGCTTACTATTTTTGGATTACTGAACCATAGGCCTGGATTATATAACTGACACTTCCTCATTTTATTATAGAGTTCTGAATATCACCTTGCATACTAGAATAAGCAGAGTGAAGTAAATTATAAGAAAACGTTTAGAAATTATTGTGAATAGCAGTGGAGTAGAAATGTTGCACTGTGATGAGAAGTGAAGAGagaacattttcatttgtttttctgttctaGTTTCATGACATGCCAAGTGGCTCACTGAAAAGCACTCCTGACATAATTGGATTGTCtatttcagtgtaaaaatacagaaacacttGTCACATGAATTAATATCTAAGGGTTTTACAGGGAAAggcattataaaatattttaaaataaatctgaaaaaatcAGTGTTAAAGTCACAAACATGCCAGGTACAGCAGTTCAGAATAACACCTGAAACTTTTTTTCTCAGCCTTAATGCTGATGAAAGGTCTGAGTTTGTTAAAGGTAAAACATATCTGTTTCTGTCTTAAAAATTTACACTGCGTCTGGCAggtattttttattaatctcTGCAACGTAACCGAAATCAAAACTGTGAAGTGAGCTGAGAATTTTgcatcattctttaaaaaacctAATGCACAAAGCTATACTTTGATCACAGCCCAATTTACTCAGAGCAGCATTACAATATACAGCCAGAAGATGCTACTGAATACTTCAGTATTTaggatttaatcatttaatcatttagatTTAGTCCATTTATGCAACCGCATGGCTTAAATAGCTTCAATTAAagaagtgctctctctctctctgctgcctgAGAGGTAGACTTACCTGATTTCCCTTTCTCCCCAGTTGACCCTGCCCCCTATTCTGAAACTAAGTATGCCTTGTGAGTTGCCTTTAAAGGAAAATGGACAGAGCTGAGCAATTCTGTTCCAACTGCACcggaaaaataaagacagaactCTGCAACAAACAAACTAGCCCAATCCATTGCACTGTAATTTCacgaatctttttttttattttaaggtaCCTTTTACATTATAGGTCAGGAGACATATAATATCACCAACTGCATTTTCAAACATATTTAGGAGGGTTAAGTACATCCCTTGGACCTAGAAGTATATCTTTCTTAATTGGAATGGATAGAGTTTGTATCTTAATACATTATCAAAAGATACAAAAagatacaaaatacatttaaagaaGGTATTGCAATATAATTTACAGCTGATTTGATGCAGTAGGATATGACTCAGTTTGGTTTTAATGCAAAAGTTGCACTGGAGTCAGGACGGAGAGAAATTCATTTCATAAAGGAGAATTTACTGATATATAGATGCCtgtattgattcattttaaatttttgctCGATACACACGGTTTTGACCCGGTGCAGAGAATCTATACAACATTACTCtaaatgtgtggtggtctggggaaaacccatcagatgtgactggctgaattctggcaaacagccaaaatgaTGGAActatgtagaattttttttacttgttctAGATATCTACAGAGATCATGTAGCATAAGAAGCCAGTTCAACAAACATGGCAGTAAAAATCAGTCTAcataaagatgtctaaaaccttacTAGGTTttacataagcctaatcagttcagaCTAAAATCAGTTGCTCGCTGTCAAAATATCCATGATGCTCCTACACTGCagtgaattaaatatttaaatataattttcttttcacttttgacAGTAACCAACTGTTAAGTATtactttacttgtggttgagatatgTGCAAAAGTGTACAGAACTCTATATAGTGGAAATGTCATAACGTGAAGTGTTTTCTCAGGCCACCACACAAATATTATCCCATCCAACTCAGTATTTCATCTTGTCCCATATCAGAACACGTTGCACTTAACAGGCATGTCGTGGTGGATTTAGTGAGCCGTAACCactaaataaatgctttaaaagttATACAGTGATGCTTAAAAACTGCAGCTACAGTTGATACAAAATGTATATGCAGTGTCGCAAGGCCTGTGTTCCTATAACTTAATGCCGTATACTAGCCTGAGTTTTGTGATTTTAACTATGTTAACACTGGTTTAGTGCACTTCACAAGTGTTAAGTTAGAAAGTGTAACTCTGTTGTAATGTACATTTCCCATAATTATGGGATATTtcaatgtttatatgtgtaacTGCATAATCTATAGATCTATATCTTAAATTTAGTCATATATAGTTTTCTATGCTGTACTGATACTCAATATATATCAGTATTTTCCTGAAGTAATGACCTCTAAAAGTGTGATTATACACTTACTTACAGTTATAAGGCTGTGGAAATGATAGTGGCACTTGGCTTGTTCAGTTTCTGTCCTCACAATCAGTGGGACATGAGAGCAGAGACACACAAACTTTAACAACCAGGGACTCCTGTTGGTTTTGGCCCCAAAACCCGCCTTTATATAGTTTTGCAGTGGTTCTTAAACGTtgtgcagccagggaccccttaaactgtaaaataaattccacacacCCTCAtaagtacagatttatttcatgaacacaatccttttattcaaatattagataaatataaatacctaaatattattaattatgtacagtaatattATGACCATTTTGGAGCCTTTATATTGCTGAATCATTATTGAGCACATTAGAttcaagctgacattatttataggccaacttttttttggcttatagACCTCTTTGCTGTTGTGAAAAAAAGACGCATGCGCAACCTGATTGCAAAAAGACCCAAGTAGATTAGTAATCTGACGCTACTCTTATATTCTTCTATGCTATAATCTGAATGAAGAacttattattatggattagcaCTAAAAGACAGACTAAAAGAATGCTATTCAGCTATGCTGTTAACTCTAGATGATCCTTATGGCTTGCCTCTGACTAAATGGCTAAATGATGCAGTGATCAAGTCTGCAATGgctggatatactgtatatacatatctcATAAAAGCTCTGTACTATACTAGAGAGAAATGAATGTAGGCATGCAAGTCTCTTGATGCTTACAGCTTTGTTGTATGTGATTAATGATGATGTGGCACTGAAAGCCACAGTACTGCCCAGCCAGATGCCATAAACTGAACAAAGTTAGTTAGCTAAATGTGTCCATTATAGGCAAATCCTCAGTAAGAACACAACCTAGCTATCTAGTGTTGGTTAGCTAGCTTTTGATGTAAAATTTAGGCGAGTTACTTAGATTTGTATAAGGAATATAAATTGggcatgttagctaactagcaagctaagtcTGTTGAACCATTCATAGTTAGTAAACCAGCTTCACTGATATGATAGATAGCGActtagctgagatgaaatgGGGATTACAAACATGGAGGTTCTCAGACCAATTATCCCTCCTAATTGCAACCGTcttctgttggcttggaaaggtGTTCGATTGGATAGTATGTGGGGGAAAAACAACAAATGTGTTCAGGAATGcttttctgattctgacaccCAATAGCATGACACGACATTTTAGCACTGTCCATTTAGCACTGTCCTGCTATGTTTTTGCAATCAGGAGGCGTGGCTGACGTCAGTGACATGTCTCACTCAGTGGTCTACTGATGTTTGGATTATACACGATTAATTCATGTGGCCAATCAAACAGGTTAATAACTAAGaactcattaataaatataatagctttTATAAAGGTGGGTTGTAATTTGcaccacagcaaaaaaaaaaaaaagccctggcTATGCTTGGCATtacccactttgagaaccactggtttatagaaatatgttttatgaaggtgtaaatgtgaaaattttCTAAAAAGGTAAACAGTCTGAGAGAAGTCGCTGAATGCTGGATTCTTTACTCGTAAAATTTGTAATCTTTGAAATGACGTCGGTAAATGCATTTACGTGTTCAGTAATGGTATGAAAGCATTATGAATCTAACTGAACTTAAAAATTTGTCTAATTTTTCCtgagttacatttaaaaaaaaaaaaaaaaaaagtctaattttGTTGTCTGGAGGTGAGTATTTTTGCATTGCTCTTGCTATTTTAGACACTTTTTTGGTCCAAGAAGTTTAACATGAAGTTGAGTTTTGCCAGATTTATTGGATACAGTACTGTATGCAGTAGTCAGCTGTCTgttcctttttctctttattttttacgGAAATGAAGTGAAacagacagcaaaaaaaagaagtgaacgatgtaaatacatatgtatatacagataTTCATAGATTTCAGTCTTGAACATGGAGATAATTCTAGTTTGAACCTTGTTTGTAAATGCTGTGGTAGAAAATGGAGCTGGTATTTTTGCAATAAAGCGATATTGTGCTCTAGTGAGGAGCGAAACAGAAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51773 lncRNA downstream 4216 10158929 ~ 10161502 (-) True opn4a
TU51754 lncRNA downstream 38087 10127414 ~ 10127631 (-) True G43790
TU51751 lncRNA downstream 49002 10115935 ~ 10116716 (-) True G43787
TU51707 lncRNA downstream 133643 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 136509 10028411 ~ 10029209 (-) True G43782
TU51888 lncRNA upstream 19739 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 31522 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 43154 10265356 ~ 10265588 (-) True G43981
TU51975 lncRNA upstream 68865 10291067 ~ 10305082 (-) True G43982
TU51991 lncRNA upstream 93523 10315725 ~ 10316448 (-) True G43987
XM_034303063.1 mRNA downstream 4195 10136310 ~ 10161523 (-) False opn4a
XM_026942424.2 mRNA downstream 4195 10136310 ~ 10161523 (-) False opn4a
XM_026942432.2 mRNA downstream 4195 10136310 ~ 10161523 (-) False opn4a
XM_034303064.1 mRNA downstream 13119 10136310 ~ 10152599 (-) False opn4a
XM_026945331.2 mRNA downstream 42737 10076289 ~ 10122981 (-) False ldb3a
XM_026941996.2 mRNA upstream 12555 10234757 ~ 10240783 (-) True myoz1a
XM_026933185.2 mRNA upstream 21954 10244156 ~ 10253087 (-) True synpo2la
XM_026941011.2 mRNA upstream 33423 10255625 ~ 10318195 (-) False camk2g2
XM_026940966.2 mRNA upstream 33423 10255625 ~ 10318195 (-) False camk2g2
XM_026940948.2 mRNA upstream 33423 10255625 ~ 10318195 (-) False camk2g2
TU51003 other downstream 936834 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1311924 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1311924 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1381920 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1695289 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1486412 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1922693 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2302434 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2309241 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2409611 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile