RNA id: XM_034302784.1


Basic Information

Item Value
RNA id XM_034302784.1
length 6135
RNA type mRNA
GC content 0.47
exon number 28
gene id jag2a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32191850 ~ 32230995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGAGCGAGTGAGTgggtgtgcgtgcgcgcgcgctgGTCACTACTTTAACTTTTCCTCACTaacgcgcgcgcgtgtgtgtgtgtgtgtgtgtgttttttcctcctccGCCTCAGACGGAAAGGTAGCGGAGGCGCAGCGCGCGGCGTGGCGGATGTTCTCACCTCTCACGAGCGTCTTTATCATGGAGAACCGCGTTCTGCTGTCCGTGTCGTTACCGTGAAGCCTCACCGGAGTCATGTGGAGTTGCACGGGCGCTTTCCTGCACTCGGTTTGCCTCATTTTGACGTTTTGGTTTGAGGTGTGCCGGGCGTCCGGTTACGTGGAGCTGCGTGTGATCAGCGTGGAGAACAGGAACGGGGAGCTGGCGAACGGCGGGTGCTGCGGCGGAGAGGGGGGCGAGGGGCGGGGCCAGGAGTGCGGCGCTGTGGAGTGCAACACGTATTTCAAGGCGTGCCTGAAGGAGTACCAGGTGGAGGTCATGACCTCGGGCCCGTGCACGTACGGAACGGCGAGCTCGGCCGTCGGGGGCAACTCGGTTCGGCTCGATGGATTCGGTAATAACCGAAACAAAGGCAACAACGTTGGGACTTTAATCATTCCGTTCCAGTTCGCCTGGCCGCGAGCATACACACTGATCCTGGAGGCGTGGAACTGGGACAACAGAACCGTCACTGCTGACAATGATGAGCAGCTGATCGAGCGCAGTGTGTATCGGGGAGAGATGAACCCCGGCGACGAGCGTCAGCTGATCCAGCACCTCGGCCTCACCGCCAGTTTCCAgtacagcgtgtgtgtgcgctgcgATCGCCATTACTACGGCAACAAGTGCAACAAACTGTGCCGACCCCGCGATGACCTCTTCGGCCACTACGAGTGCGATCACCATGGCAACGTGCAGTGTTTGGAGGGCTGGACCGGACCCGACTGCAAGAAagcGGTCTGTAAGCAGGGCTGCAGTGAGCTGCACGGAAGCTGCGCCGCCCCGGGACAGTGCACGTGTAGTTACGGCTGGCAGGGTCCTTTGTGTGACGAGTGTGTGCCGTACCCGGGCTGCGTTCACGGCACGTGTGTGAAGAAGTGGGAGTGTATCTGTGAGAAGAACTGGGGCGGGCTGCTCTGCGACAAAGACCTGAATTACTGCGGGACTCACCGGCCGTGTGTAAACGGAGGGACGTGTATGAACACCGAGCCGGACGAGTACCGCTGCGTTTGTCCCAACGGCTACTCGGGCAAGAACTGTGAGATAGTGGAACACGCGTGTATGTCCAACCCATGCGCCAACGGCGGGACGTGCCACGAGATTGTATCAGGATTCGAATGCCACTGTCCATCAGGGTGGTCAGGGACGACCTGCGccaaagacaaAGATGAGTGCATGTCCAGTCCGTGTGCACATGGAGGAACCTGCATCGATCAGGACAACGGCTTCAAGTGTGTCTGTCCACCACAATGGACGGGAAAAACCTGCCAGATAGacgtgaatgagtgtgtgaagaggCCTTGTGCAAACTCTTACTCGTGTAAAAATCTGATTGGTGGATATCACTGTGCCTGCTATCCAGGGTGGGCGGGACCAAACTGTGACATCAACATTCGCACGTGTTACGGCCAGTGTCAGAACGGCGGCACGTGTACGgacggGCGTCACGGCTACGTGTGTCAGTGCCAGCCGGGGTTTGTGGGTAAGCACTGTGAGGtgcagcagagtgtgtgtgtgagctcgcCGTGTCAGAACGGCGGTCAGTGTCACgccacacacaccacctacgagtgtcagtgtgtgagcgGATACACAGGGACACACTGCGagGTGCAGGTGGACCCGTGTGTTCCTAACCCGTGTGTAAACAAAGCTGAGTGCCACGCCCTGCAGTCAGGGTTCTACTGTGAGTGTGCTGATGGTTATGAGGGCAGAACCTGCGCCGAGCTGACGGACCACTGCAAGATCAGTTCGTGCCAAGTGATTGACAGCTGCACCATTTCCGTGGCGAACAACTCCAGCAAGGAAGGGGCGTGGCACATTTCATCCAACGTGTGCGGCCCGCACGGTCGCTgtatcagccaatcaggaggcAACTTTACCTGCGCCTGCCTGCCAGGGTTTACAGGGACCTACTGTCACGAGAatgtgttactgtgtgttactGGTCAGCTCTGTGAGCGGGGAACGTGTTTAGATGGCATTAACTCGTTCAGCTGTGTCTGCCGTAACGGATGGGAGGGTCAGCTCTGTGAACGCGAGGTGAACGAGTGTGAGTCTGAGCCGTGTATGAATGGTGGTCTCTGTGTCGACCTGCTCAACGACTTTTACTGCCACTGCGCGGACAACTGGAAGGGCAAGACCTGTCAATCAcgagAGAGTCAGTGTGACTCCACCACGTGTTTGAACGGTGGAACCTGCTTTGATCACGGAGACTCGTATCGCTGTGTGTGTCCACCTGGTTTCGGAGGCAGCACCTGTAACTCAGCGATGAACAGCACGTGCGACTCTCAGCCGTGCGCTAACGGGGGGACGTGTGTCGGAGGGGGTGGAGCTTTCACCTGCATCTGCAAGGATGGGTGGGAGGGGCCTACTTGTACTGAGGatgttGATGACTGTAATCCTCATCCATGTTATAACGGAGGTGAGTGTGTGGACGGAGTGAACTGGTTCCGGTGTCAGTGCGCTCCTGGGTTTGCCGGCCCCGACTGTCGCATCAACGTGGACGAGTGTCAGTCGTCTCCCTGCTCGTACGGAGCCACGTGTGTGGACGAGATTAACGGTTATcggtgtgtgtgtcctgtgggCCGAGCTGGATCACGCTGTCAGGAGTttatCGGTGTTGGTAAGGTGTGTCAGCACTCGGGCGTGTCCGTTCCTCACGGCAGTCGCTGGGAAGACGACTGTAACGGCTGTCAGTGTATGAACGGAAATATCAAGTGCACCAAAGTGCATTGCGGCGGTCGGTCCTGTCTGCTCGACTCTCAGGACCCTGAGTGTGCTGGAGGTCAGGAGTGCATgccgcatcacttcctgttttgtctCCACCCACCGTGCCAGCAGTGGGGCGTGTGCTCCGATCCCGATCCTTCACCAGTCAGCACCGAATGTCAGCCCAACACCGATTACACGAGCAGCGACTGTGCGCGCGTCACCCTCGTGTTCGATACAGACAGCGTGCCTCCGggAACAACTGTCGAAGGAATCTGTTCTGAACTCAGATATCTCCCAATCACGCGAACCCTTGCCCGAGACCGCACCCTCTTTATTCTCTGTGACCAATCACAATCGAGCAGCAACGCTGTGGAGGTTGCCATGtcgTTTGAACAGACTGCAGCGTTTGAGGAGCACGCAGACATACAGGAAGTAGTCAGCTCCATCATCAGCGTCCTCTCCAAACGCCACAACAGCACGCTGCTGCTGGCCATCCGAGAGGTCAAAGTTGAAACGCAGGTCATGCCCACATCGCTGGATTACCTGGTCccgctgctgtgtgtgttgttctccGTGTTGTGGATCTCCTGCACGGTGGTGTGTGTCTGCTGGATCCGCAAGcgcaggaaagaaagagaacgCGTCGACGCGCCAGTGGAGGAGAGCATCAATAACCAGCGAGGGGCGTTTCTGAGCATTCAGTCCTCTTACAGAGAGGACAGGAAGAGTGTAACGTATCCGCTGGACAGGATCGGAGACGGAGCGGAGAGacaggatgaagaggaggacgacgacagagaggaagaagggAGCCCAGGGCTGGTGGTGGATAAGTGCCCTTCCTTAAAGTACACTAAAGGGGAGGTAGTGTACACCGTTTGCACCGCAGCCCAGACACATCCTTTAAGGACGCACTACAGCGCCAAAGACAACCGGTGTAAAGACGTGAACCGGAGTGAGCAAGTCTCCGATTGCTACATATGAACAAAACTGTCTGGAGCTAATCCAGATTTTTCACACTCTTCTATTTCTGTTTACACTTGTgtcattatttgcattttgtttttgtttttttaaataaaaatggaccTGTCTCTATGGACGCGGCGGGAAATTTGGTTGAAGGTGAATCTAGAAACGGCAGCTCGGATTTTGATTTGTAGTTTTGGATTTTCTTTGAGTCGTGACGTGTGTGAAACGTGTGTAATACGCGCCATTAGCGTATTTTCCGGACTATAAGATGCGTTCATTCCTCTGGTAAATGCTGGTGCAACGTTTACAGCAAAGTGATGTTTGTATTACCGTTTTACGTTAGCATATTGTtaccatctttttttaaataacgtaAATATACCATTAAAACTAACTACAAGGATTGGGCAATATGGCAGAaatattatatcacaatacttcAAGATGGTTCGTGAGACACAGTGTCTCACgcatgaaacattttattttcatcatttatcatttattttatcacaACATGGCTTTAAAATTGCTGATAAAAACTATAAGTTCAATAGTATTACTCATAAgaaatattcataattttaatttttgctgtatttttgcaaatatgtttttcaaaagaaacaacactaagtgaaataaaaaacatttccaccagTAAGCAATGACACTAACTTTAGGTCAATTTAAGTAAttaagcataaaataaaaagtagttCTACTAAGTTTAGGGAATTTTTCCCCtataaaactgacaaaaaaattcCCAGCAATATAAAGTGACACTAATTTctaaattaagtaattaaaaaaaatcataaaacttTAACAAgaaactgaaggcaaaaaaaaaaatctacaatagAGAACTATAAGAAGAAGCTACACAGAACATTAGtgtgctgtttatttcttttttttaaagtaacagGAAGTCGTTTAGGGATATAGAGGTATCATAGCTGCAatatatttaagaaaatgtaTCGTGATGTTGCAATATTGATAACGTATCATTGTATCATCTACCACTAAGTGAGAAATAAAGTGAAATCACGCGCTTGGGTAATTATGACGCcagcaaaaatacagaaatcaccaaactgatgctaaatcagtaaaataatagttaaatgctgacactgaatattattttattacattatttttatatgatttttttatattaagttACTGAATAACTTTATGTGATCAAGCCAGACGAgttgttaaatgttattttttgaaGAAAGCTGGTTgtaatctttaataaaaattatgtaCATTAATGTAACTTGTGCAACAAGGCATCTGCTGTTTACTGATCTTATCTCTAATCAGACAGAATGTGTGTGGGGTTTTATGGTTTATGTTTTATATCCTGGAACAATCTATAGTCCGGAAAATACAGTACACGGAGGTGATTAGATGAAAAGTGAACGGCTTAACCCTTCAATCATTCATTGTTCATCTCATCatttgtgtgtaataaatgcttaaagtgtgtaaagtttcATTTCTACACTGTATGACGTTTCCGTTTTTCAAGTTCGCCACCGGTTTTGACAGAAAGTGggaaatgtttttgctttttacagATTCACAGAGaaagactaaaataaatgtaaaaaaaaaaaatgttaaaaaaagtgtaagaaaaaaaaatacatgtgtacatgtgtaaatAGGAAAGAGTTATAGCTGTGTATATTTGAGTTTAGTAACTTAagagactttttatttttattattattattattattatttctgtcaaatatttttgctccatttttctttgttaatattCTCATTCCTATTATTTATGTTGgctaataatatatatatatatatatatatatatatatataaatccctAGAGTGCTTACGATCATGATGtttgtgttctttgttttgCTCTGAAGTCTGTAATCAGAAATCTGTAGGACTTTGTGGAAAGAATTTgttcaaatgaaaacattttacttcacaaatcagtctgtttcctgttttgaaAGGATATATCACTTCAAGTATTTGATGACTTCTTTTTCCTCCTGGGCACTagaaggtgatttttttttccagaaattatGGAGCTGTTGgggttttactttttattttgtgagaCATTTTGGAATCATAAGTGGATCAGCATTTCATGACATTAAAAGAACTTGTAataataaagagagacagaattttgtttcatttttaaaaaatgaaaataaaaatgctaaacaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66675 lncRNA downstream 119352 32070763 ~ 32072498 (-) True G56614
TU66676 lncRNA downstream 119352 32070763 ~ 32072498 (-) False G56614
TU66300 lncRNA downstream 258260 31887681 ~ 31933590 (-) False G56305
TU66757 lncRNA upstream 12928 32243923 ~ 32244290 (-) True G56693
TU66733 lncRNA upstream 69311 32300306 ~ 32309955 (-) True G56670
TU66724 lncRNA upstream 150132 32381127 ~ 32381831 (-) True G56661
TU66731 lncRNA upstream 168920 32399915 ~ 32400310 (-) True G56668
TU66735 lncRNA upstream 183914 32414909 ~ 32415460 (-) True G56672
XM_034302613.1 mRNA downstream 3003 32132481 ~ 32188847 (-) False esr2b
XM_034302615.1 mRNA downstream 3004 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA downstream 3004 32131447 ~ 32188846 (-) False esr2b
XM_026939147.2 mRNA downstream 3005 32132481 ~ 32188845 (-) False esr2b
XM_026939148.2 mRNA downstream 3005 32132481 ~ 32188845 (-) True esr2b
XM_034302823.1 mRNA upstream 13638 32244633 ~ 32289607 (-) True brf1a
XM_034302946.1 mRNA upstream 84463 32315458 ~ 32331216 (-) False dcdc2b
XM_034302945.1 mRNA upstream 84463 32315458 ~ 32331216 (-) True dcdc2b
XM_034302944.1 mRNA upstream 84463 32315458 ~ 32330739 (-) False dcdc2b
XM_026939422.2 mRNA upstream 100398 32331393 ~ 32336477 (-) True iqcc
TU66291 other downstream 353615 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 362366 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 591165 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 643217 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1331344 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 8606 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 119806 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 143341 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 143351 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 422841 32653836 ~ 32661562 (-) True slc66a3

Expression Profile