RNA id: XM_034302786.1


Basic Information

Item Value
RNA id XM_034302786.1
length 6506
RNA type mRNA
GC content 0.48
exon number 54
gene id myofl
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15325232 ~ 15354413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAGTGCTGTTGCTTAACCTATTCCAAGCTTCATCGCACTGTTCCctcctctccttcctcaccctgcCTGCAGCTCGCGCTTCCTCCTTCAGCGCCTCAGACCTATGCAGAGGAGAAGCGCGCTGGACTGATTCCTGAGTCGGCACCATGCTGAAGGTGGTGGTCGAGTGCGCTAAAGCAATCCCCAAAAAGACACTCGGCAACCCGGACCCCATCGCCGCAGTCGTCTTTAAAGgtgaaaaaaagaaaaccaaagcTATCACTAGTGAGTTAAATCCTGTGTGGAATGAGATTCTTGAGTTTGATTTAAAGGGTTCGCCTCTGGACTCTTCTTCATTCATCGATGTGGTGGTTAAAGACTATGAGACCATCGGCAAGGACAAATTTATTGGCTCTGCAAAAATCTCTCTCCGGGATTTGGCCAGTGGTCAGACCAAGTCTCTGCCTTCAAGGAATGTCCCTCTTGTCAATGAGAAGAAGCAAGATATAGGGGCAACTATAAATTTACTACTTGGATATGAGCCTCCTGCCAGTGCTATTACTAACCCAAATGCACAAGTCGATGGAGATGCCAGTGCTGGAGAAGCAGGTGTTTCTCCGGCTGGAAAGGAAGAAGGTGATGAAGAAACTACTGACTGGGGAGATCCACGGGCTCCGGGAGAGGCATCTGCACCCGGCCAGCCTGGAAAGCCCCAAAAGATGATCCGCACAGCCCGGAAGAGACAGAAAGCTCTGTCTAACAAACCCCAAGATTTCCAGATTCGCATCCGAGTCATCGAGGGTCGGCAGTTGCCCGGAAATAACATCAAACCAGTGGTCAAAGTAAGTGTTTGTGGACAGACCCACAGGACAAGGATCAGGAGAGGAAACAACCCATTTTTTGATGAGATCTTCTTCTACAACATGAACATGCTGCCTTCAGAGCTTTTCGATGAGAACATCTACATTCGGGTTTATAACTCATCCTCCCTGAGATCGGACAGTCTTTTGGGGGAGTTTAAGCTGGATGTTGGCTATGTCTATGATGAGCCTGCTCATGCCATAATGAAGAAGTGGCTGCTGCTGAGTGATCCCGATGACTCCAGCTCAGGAGCTCGAGGTTACCTGAAAGTCAACATGATCATTGTGGGAACTGGAGAGGAGCCTCCGgcagaaaaaaaagagcgcAACGAGGAGCAGGATGACATTGAGAGCAACTTGCTGCTGCCTACTGGGGTCACACTGCGCTCAGCAACACTCTCTCTCAAAGTGTACCGTGCAGAGGACATGCCACAGATGGATGATGCATTTGCACAGACTGTCAAGAATATATTTGGAGGAGAGGGTGACAAGAAAAACCTTGTGGATCCATTTTTGGAAGTTAGTTTTGCAGGCAAAAAGcTATGCACAAAGATCATTGAGAAGAATGCAAATCCAGAGTGGAACCAGCTGATAGGCCTCCAGGTTAAGTTCCCATCAATGTGTGAACGTATCAAACTTACTGTGTTTGACTGGGATCGCTTCACAAGCAATGATACTGTTGGAACCACATACTTAAATCTGTCCAAAATATCATCACCTGGTGGTGAAGTAGAAGctgggTCGCTTAATGAGAATGGAGGCCGTCCAGGATCTGATGtAGACAGAATGGGGACTGAGGTTGGCTTTCTTCCAGCCTTTGGTCCCTGTTACCTAAACCTTTATGGGAGTACAAGGGAATTCTCTGACCTTCCTGACCCATATGAGGAGCTCAATTTGGGACAGGGTGAGGGGGTAGCCTACAGAGGCAGAGTTCTCATTGAACTTTCTACTCGGCTGGATGACAAGATTGACAAGAAAGTGGATGACCTCAACAACGATGATGTCCTAGTAGCACAGAAGTACCAGCGGAAGAGGAAGTACTCCCTGTGTGCGGTGTTCCACAGTGCGTGCATGCTGCAGGAACCTGGTGAACCCATCCAGTTTGAAGTCAGCATCGGCAACTATGGCAACAAGATGGATTCAACATGCAAACCTCTGGCCTCCACCACGCAGTACAGCTGTgctgtgtttgatgGAAATCGCTACTACTACTTGCCTTGGGCTGACACTAAGCCGGTTGTTATCCTCACTTCCTTCTGGGAGGATATCAGCCATCGTTTGGATTCAGTGAACGTTATTCTCTTTATTGCTGATAGACTGCAAGCCAACATTACCACACTGAAGACGGCCATGCTGGCTAAAGTTACTGAGACACGACTAGCAGAGATCTGGCTGAAACTTATCAACCAACTCATTGAAGACCTCACCAATTACCGGTTGCCAGACATAGAGGCCAAGTCTAACCTGACAGCACTGGATGTTCAAATCAAAACGCTACGAGATAGAACCTTCATCAGCATTAGAGATGCCGCCTGCCACATGAGGGAGGAGGCTACTGATGTTAAAGCCACACTTACTGACATAGAGGATTGGTTAGACCGCCTACAGCAGATTGCAGAGGAGCCTCAGAACAGCATGCCTGATATCATTATTTGGATGCTGAGAGGAGAGAAGCGTATGGCTTATGCACGCATCCCAGCCAATGAGGTCCTCTTCTCCACCCATAGCGAAGAGGCTACTGGAAAATACTGTGGCAAGACACAGACCATCTTCATGAAGTACCCGATGGACAAAAATAAAGGGGTGAAGATTCCCGTGCAGCTGCGTTTGAACATGTGGTTGGGCCTGTCAGCTCACGAGAAGAAGTTCAACAGCTTTGCAGAAGGAACATTCAGCGTCTATGCTGAAATGTATGAAAACCAGGCCCAAGTTTTTGGAAAATGGGGAACCACAGGCCTGGTGGGCCGCCACAAGTTCTCTGACGTGACAGGGAAGGTTAAGCTGAAGCAGGAGTGCTTCCTGCCCCCACGTGGCTGGGAATGGGAGGGTGACTGGTACGTCGACCCTGAAAACTGTCTGCTGACAGAGGCTGACGCAGGGCACACAGAGTTCACGGATGAAGTATATGAAAATGAGAGTCGTTTCCCTGGTGGCGAGTGGAAGCCAGCAACCGAAAACTACACTGATGTGAATGGAGAGAAAGCCCAGAAACCCAGCGAGATTGAATGTCCCCCAGGGTGGAAGGTGATTCAGGACTGGAGCTTTGACAGCAACAGAGCTGTGGATGAGAAAGGTTGGGAGTATGGCATCACTATTCCTCCAGGTGATAAACCCAGCTCCTGGGTAGCAGCAGAAAAAATGTACCATGTCCATCGCAGGAAAAGACTGGTCCGGCTGCGAAAGAAGATTGCAAATGCCCCCAGCTTAGAGAAGAAAGAGGTGGGAGATGGCTGGGAATATTCctctctgattggttggaagttTCACAGGAAGGAGCGTTCCTCAGATACGTTCCGGCGCAGACGCTGGAGGAGAAAGATGGCCCCATCTGACCGTGTGGGCGCGTCAGCCATATTCCAACTAGAGGGGGCATTGGGGGTGGATGTCGATGAAAAAACTAGCAAAAAAGAGGCAGCCAAGCTTTTCGGTGCCAACACACCCACAGTTTCCTGCAACTTCAGCAGGTCATACATGTACCACCTCAGAGTGTATGTTTATCAGGCCCGGAACCTTCTTCCCATGGACAAGGACAGCTTTTCGGATCCCTACTGCCATGTGTCCTTTCTCCATGTTAGCAAGACCACAGAGATCATTAAAgctaacctcaaccccacatGGGACCAGACACTCATCTTTAATGACATTGAAATCTATGGAGACCCACAGACTATTGCTCAAAATCCACCCAGTGTTGTCCTGGAGCTTTTTGACAGTGACCAAGTGGGGAAGGATGAAGCCATGGGCAGGTGCACATGTCCCCCAGTGGTAAAACTAAACCCCAGCACACCAGTGAGCCCAAAGCTGCTCTGGTTCCCCGTCACCATGAAGGGCCGAAGTGCTGGGCAAATGCTGGTGGCAGCCGAACTTTTGCTGAATGATAAAGCATCTGAGTCTGAACTGCCACTTGTGCCACCCAGAAGAGGAGAGAATCTGTACATGGTGCCTCAGGGGATCAGGCCGGTGGTGCAGCTCACTGCTATTGAGATTTTGGCCTGGGGTTTGCGTAACATGAAGGCATATCAGCTGGCTGCTGTTTCTTCCCCCAGTCTCGTTGTGGAATGTGGAGGGCAGACTGTTCAGACGGCTGTCATCAAAAACATCAAGAAAAACCCAAACTTCCCTGGATCAGTTCTCTTCCTCAAAGTGCTTCTTCCCAAAGAAGAAATGTACACTCCACCCATAGTGCTGAAAGTGATAGACCACAGGCCCTTCGGCAGGAAACCTACTGTCGGCCAGTGCACTATAGACTCTCTGGAAGAGTATAGGTGTGATCCCTACATGGGCACCTCTGAAGTATCTAGGACTGCAAGAGTGGCCATGATGGTAGCAACCTCTAGAGATGTGATCATTGACATAGAAGACAAAATACCAATCGTAGACAGCAAGccTGCTGAAAAGGTGGATGAAGCTGTGGACTGGTGGAGTAAATTCTATGCCTCTACTGGAGAGCATGACAAGTGTGGCCCGTATCTCCAAAAAGGTTATTCCACTCTAACAGTTTATGAAAAAGAACTTGAGGCTATACCAGATTTCCATGGCCTGACAGACTTCTGCAACACATTTAAACTGTACAGAGGAAAgagtgatgatggtgaagagGATCCTTCTGTAGTGGGGGAGTTTAAGGGTTCTTTCAGAATATACCCCTTATCAGATGACCCGGATGTCCAAACTCCTCCTCGGCAATTCCGAGAGTTGCCTGAGAGCGGGCCTCAGGAATGCGTGGTTAGAATTTACGTGTTGCGCTGTATTGACCTGCAACCCAAAGACAACAATGGCTTGtgcgaTCCTTATTTAAAGATTACTCTTGGAAAGAAGACCATTGAGGACAGAGATAACTACAAACCAAACACCTTAAACCCTGAGTTTGGAAGAATGTTTGAGCTGTCCTGTTTCCTTCCGCAAGACAAAGACCTGAAAATCAGTGTCTATGACTTTGATTTGCTAAGTCGTGATGAAAAGGTTGGGGACACGGTTATTGACCTTGAAAATCGCCTCCTTTCTCGATTTAATGCACACTGTGGTCTTTCCCAGTCATACTGTGTCTCTGGAGTGAACCAGTGGAGAGACCAGCTGAAGCCATCTCAGATCCTGGAAAACCTCGCCAGACTGAGAGGACTCCCGCCACCACAGATTGCAGAAGATGGCAGTTCACTGTCTTTTGGAGGACGTAACTACAACCTTCAGGACTTAGAGGCCAGTAAAGTGCTGCACCAGCACCTGGGTCCAGCCAAAGAGCGTATATGCCTGCATGTACTGCGCAAACAGGGCCTGGTGTCTGAGCATGTAGAAACCAGGACACTCTATAGCTCCTTCCAGCCCACTCTCTCTCAGGGGAAAGTTCAGATGTGGGTGGATATATTCCCCAAAAGCCTTGGCAATCCTGGACCCCCAATTGATATCAGTCCTCGTAAAGCTAAAAAGTACTACCTACGGGCTGTCATTTGGAATACCACTGATGTCATTCTGGATGAAACCAGCATTACTGGGGAAAAGATGAGCGATATCTATGTGAAGGGGTGGATGCCAGGTATGGAGGAGGACAAACAGAAAACTGATGTCCACTACAGGTCACTAGATGGAGATGGAAATTTCAACTGGAGACTAGTCTTTGGCTTTGACTACCTACCAGCGGAGCAGCTGTGTCTTGTGTCAAAAAAAgagcaCTTCTGGAGTCTTGACAAAACCGAGTTCAGGATTCCTCCTAAACTGATTATCCAGATATGGGACAATGACAAATTTTCACTGGATGACTACTTAGGTACGGTGGAGTTAGATTTAATTAATCTTATCCCTCCAACTAAGACTTCTGAAAAGTGCAGTCTTGACATGTTGAtacaagaaacaaacaagagCATCCCTCCCAAATCACTCTTTGCCcagaagtgtgtgagaggcTGGTGGCCCTGCGCCATGGAGGAAGATGGCAAGAAGGTTCTGACTGGCAAAGTGGAGATGACTTTGGAGATTGTAGATGAGAAGGAGGTAGAAGAGAGGCCTGCTGGGAAAGGAAGAGATGAACCCAACATGAACCCCAAACTGGATCCTCCAAACCGTCCAGATACATCGTTCTTGTGGTTCACAAATCCATGCAAAACTCTGAAATTTATTGTGTGGCGCCGGTTTAAATGGGTCTTCATTGGAATCATCATTCTCATACTAGTGGGCCTGTTTGTAGGAATCCTGCTGTACTCGTTGCCTAACTACATCTCAATGAAAATTGTGAAGCCTTTCTGATGGGAACCTAAAGAACAGCCATCAGGGTTGAGTTCCTTGGTTTTAATACACCAGCAAGATGAACTCATtgcaacatttttaatataaaatatttgtactTCAAGATTAACGAAAGTTTTTGCACTTTTCATTGCActaatgttcagtgtttttttagctttttatacaatacatatataaacaagaaaacattttggttcaaggattg

Function

GO: NA

KEGG:

id description
K22125 MYOF; myoferlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55286 lncRNA upstream 240922 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 240922 15081653 ~ 15084310 (+) False G46765
TU55220 lncRNA upstream 310051 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 313243 14965906 ~ 15011989 (+) False G46638
TU55373 lncRNA downstream 64616 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 118788 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 356724 15711137 ~ 15715524 (+) True G47043
TU55651 lncRNA downstream 539168 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 678891 16033304 ~ 16035339 (+) True G47084
XM_026940827.2 mRNA upstream 3185 15259363 ~ 15322047 (+) True unc5b
XM_026940851.2 mRNA upstream 3185 15259363 ~ 15322047 (+) False unc5b
XM_026940860.2 mRNA upstream 3185 15259363 ~ 15322047 (+) False unc5b
XM_026940842.2 mRNA upstream 3185 15259363 ~ 15322047 (+) False unc5b
XM_026940869.2 mRNA upstream 3185 15259363 ~ 15322047 (+) False unc5b
XM_026940301.2 mRNA downstream 1404 15355817 ~ 15386394 (+) True parga
XM_026942885.2 mRNA downstream 34083 15388496 ~ 15413390 (+) True ogdhl
XM_026943684.2 mRNA downstream 93010 15447423 ~ 15450880 (+) True lrit1a
XM_026942759.2 mRNA downstream 126114 15480527 ~ 15487523 (+) True chst3a
XM_026933760.2 mRNA downstream 235705 15590118 ~ 15625846 (+) False pax2a
XR_004577898.1 other upstream 957786 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1042064 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1824186 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2291984 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2325270 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 439015 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 716301 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 716346 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 880122 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3986937 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile