RNA id: XM_034302823.1


Basic Information

Item Value
RNA id XM_034302823.1
length 4814
RNA type mRNA
GC content 0.48
exon number 19
gene id brf1a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32239601 ~ 32289607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTGACGCTGTATCGCTCTAGCACATTTGAAAAGGGGTGATTAGTACTTTTAACGCTCAGTACATGGCAGTGTTACGATAATACTCGTAACTTTGATttattgtacattattttatgaaaaatagaTACTTTAGTTGTTATTAAGACGCCATAACGAGACTAAAAGGTCTACTTAAAGCTTTTTAAACACTGCGCCCCCCCCTCCGTTAGGAGCGACAGTGGTATGATCCATATGgcacgctgctgctgctgaacatGTGCTGTTTGTTGATCTGATAGCGCAATGTCTACTTATTGAGGGTTAATGTGGTTATTATCCGGCTTGTCAGGTGAAGAGAGTGAGCTAAGTATTTACGATACATCGCGTTCTTCAGATATTTTGTTCAGTTGAATTACAGACAGTTCATTTTCGGGAGAGAGGAAGCCGAGTTAGCCACGCGCGCGCCTGCAGGATCAGGCAGGACATTAAGGGACCCTGCTTTCAGCTGCTCCAGACAGTTTGTCTCTCTGAGGTGACCGCGGCACCGACACCATGCGGAGGTGTAAGAACTGCGGTGGGACGGATGTGGACGTGGACCAGGCTCGCGGTGACGCCGTGTGTATGGGCTGCGGCTCCGTGCTCGAGGACAACATCATCGTCTCGGAGGTGACGTTCGTGGAGAACAGCTACGGAGCCTCGTCAGCGGTCGGCCAGTTCGTGGCCTCGGACTCTCAGGGCAATGTCCCGTCTCTGGGTGGAAACTTAACGGGGATGGGAAAAGAGTCCAGAGCACAGACGTTACAGAACGcGAAGAGGAATATAAATCACCTGGGCCACCAGCTGCAGATGAACCAGCACTGCCTGGACACGGCCTTCAACTTCTACAAGATGGCGCTGTGTAAACGCCTGACCCGAGGGAGGAAGTCGGCCCACGTCATCGCCGCCTGCCTCTACCTGGTGTGCAGGACGGAGGGCACGCCCCACATGCTGTTGGATCTTAGCGATCTGCTGCAGGTCAATGTGTACGTGCTGGGAAGAACGTTCCTGGTGTTGGCTAGAGAACTCTGCATCAACGCTCCAGCCATAGaTCCGTGTCTGTACATCCCCCGCTTCGCCCACATGTTGGAGTTTGGCGAGAAGAGCCACGAGGTGTCTATGACGGCGCTGAGACTCGTACAGAGGATGAAGAGGGACTGGATGCACACGGGACGAAGGCCTTCGGGGCTCTGTGGAGCAGCTCTGCTGGTCGCCGCACGTATGCATGAGTTCCGTCGCACCATCAAAGACGTGATCGGTGTTGTTAAAGTGTGTGAGGCCACGCTGAGGAAGAGgctgAGTGAGTTTGAGGACACGCCCACCAGCGAGCTGACCATTGACGAGTTCATGAGGGTGGATCTGGATCAGGAATGTGACCCGCCCTCTTTTAAAGACGGACAGAGGAAGCTCCGGCTGCAGAAGATCGAGGAGGAACTGGCTAAGAAGATCGACGACGTTCAGGgtgaaaTCTCTGGCTATCAGGACGAGATTGAAATGGAGCTGGAGAACAGTCGACCAAAATCCAGAGGGATCTTTGCAGCTTATGCAAAAaatgACGACGCCGTCTCTGTGACGTCATCCAGCGTGCACGATCTTGACGACGAGGGCGAGGATGAAGACCTGCGCGTGGCGGCGTCTCACCTGAGCAAAGACCTGCCCGGCGTCAGCGACGGAGAGGAGCAGTGCGATGATGAGCGACAGGAAGCGAGAGAGGAAGAGCGAGACTCTCAGCCCAAGCGTCCGTCTCTGGAGGCTCTGCTCGGGCCGCTGCCCACCGCCGCCAGCCTCGGCCTGTCCGACTCCATCCACAAGTGCGTgggagaggagaaggagaacgAGAACGAGCAGACGGCGGACGGCGGTGAGCTGGACCTGAGCGGGATCGACGATGACGAGCTCGAGTGGTACATCCTCAATGAGAAGGAGGTGAAGATTAAAACTGAGCTCTGGATGCTGGAGAACGCAGACTACCTCAAAGAACAGAAAGaaaaggAGGAGAGAATAGCGAAGGAGAAAGAGCTGGGTATCTACAAGGAGAAAaagCCGAGGAAACGGGCTCAGAGACGAGCACCGATCAACGCCAGCACGGCTGACGAGGCCATTGAGAAGATGCTGGAGCAGAAACGGATCTCCAGTAAGATCAACTACGACGTCCTGAAGGACCTGAACCGCTCGAGCGTGAAGAGCCCGCCGCCCGAGCCGAAGGAGTCTCCGGGCCGCGCCACGCAGAGGAGGACACCGTCAGCGCGCCCCCGCAAAGCCAACGAGCTCTCGGCCAGTCTGGCAACGCCGGCCAGCAACTTCGGCAAGAGGTTACGGCCACTGATCTCGGCACAGCCTGCTAAGAAGCCAGTCCTGGATCAGCTGGTGTCTGAGACTGCAGACGCCCCTGCGGcggttacccacaatgccgtggTGGTGGAGAGCGGGCCCGTAGCGTATGAAGACCcgggagaggaagaggaggaggaagaagaggagcagTGCGTCAGTGCCATGCAGCTCATGGGAGGAGACGaTTACGGCTATGATTTTGACGACGATGATTGACTTTAGTGCCGCTGTGTGTAAGCGAGATGGACTGCTAAAGACACAAGCTGCTAACACTGCacctacacgcacacacacacacacacacacacacacacacacacacacactgctgctgcctTATACTTGAAGAAACAGTATTGTTTTACGCACACACTGTGACTATAATGCTGCTGATATTAGACATAATGCATTCATACATGTGTGTTTGATTattacaaagtgtgtgtgtgtgtgtgtgtttgttttatctcTAATAAGGTCCAATTAGTGAGACAGGGAGCATAGAACAATCTTCAGCTTGTGtgacatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgagcgCTTCTTGTAATTATATTAGCGTGACATACATAGAGCTGAATGATGGCTCATGGCCATGTGCAACTAAATGGACTACACTTtaatgttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgttagagagagataaagagaagtAGTAGCCGAAGACAGCGTGTTCAAAATGCCAAAGTATTACAACATTATGGAAAGCcttgctcttgctctctctccctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctatgctGCTAATCCAGAGCCTTTGGATTCCAGTTTCTACCAGGTTCatattgtgttgttattttttaatttttttttaatttttgttaatttagtGACATCATGAACATGATTTTGCTCAGATGCTTTGACTaaacgtattattattattattattattattattattattgcaggtTAGTGCTGTGTTTTTTAAGCTGttctgtgattatttatttttttcacagtctTGCCTTTGCGACTCTCCTTAGACAGCGATGACAAATCATAACCAGAGTGCAATAAAATAGTAACTGACGTGTAGAGAATATTGCTAATATTTGCGTAGATTCCCAGGTACAAGCCGAACATACGAGAGTGAGTCAAACGAAAACAGAAATTATAATCAAAtcgattttatttatttattttttttaaaggaggaATCCAGACACTCGTCAAGAGTTCATAAGTGGTAActgtttgcaataaacaatgcaaaattaaaaaaataataataaaaataaggcCATCATTTGCCTTGTACAGTATAAGagcataatgtttaaaataaagcattCTAATGTCAGGAAAAACACGGTAAGGAGGAGCTGAGAAACGCCAGGCTTTGAATATATTTAGCTGGAAAACTCGGGTGTTTTATTTAGCTAACGGTACAGTATAgagctgttgctatggttacgtcTCAGACTTGCGTCTCGCTCTGATCTCGCGCTCTAGTCTCTAAATGATGGCTTTCTGCTTTCTGTGTGTTGGGTGGAGCAATAAGCTAAGATCATCACAGTAACCAGGTTCACATAAAAACGGGTGTTGATcgaataaatgcagcttgtgacTGGTACAGCGTTTATTTCGTAACCCGAAGATCCACGTAGCCGCCTCCTGACGACGTTCTGAAGCCTCTGTGATGATAACGCGCATGCTGagttgtgttatttattatatgacATGCCTGTAGAGAATATTACATCTtctatatattacatatattactgCAAAGTGCTAAAGGGAAATCTGTACAGAGAGCAGAGGAATGTAAAGCGAGGGGAAAGAAAAGTGCTGCCTGTACGGTGTGAAGATCATTTTCATAAATGCATCTGAAGTATTAAAATGAGCCGAGATTGACCGTTTCTGTAACTGTGTTTGGAattgctgtgctgttatatactGTTTATACAGATGAATCCGACTCACCACAACCACCACGTCctcgattattttcctctaacagcaccaCACGGAGTCTACACTCTTACCCTGCTCTGTtggaagaatgtgtgtgtcGTGTCTTTGTGCTCACACTCATCATCTAAGGGCCGTGTAATTagttactgtctctctctctctctctctctctctctctctctctcaagagAATGAAGGATTCATGTAAATCATTCCTGCTGCTTCAGGAGCCTCAGTATATCATTATACTTTAAGATACAATCATTTCTGAAAACTGAACCAGTCATGTAGTGCTGTTGCTTAGCTGCTTCTTAATTTGGTCACGTTGCTCCCTCTAGTGGTCATTCACAGTAAGTACAGACAGCGACCCCTGTACACaacctgcaaaaaaaa

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66757 lncRNA downstream 343 32243923 ~ 32244290 (-) True G56693
TU66738 lncRNA downstream 36626 32207489 ~ 32208007 (-) True G56675
TU66675 lncRNA downstream 172135 32070763 ~ 32072498 (-) True G56614
TU66676 lncRNA downstream 172135 32070763 ~ 32072498 (-) False G56614
TU66300 lncRNA downstream 311043 31887681 ~ 31933590 (-) False G56305
TU66733 lncRNA upstream 10699 32300306 ~ 32309955 (-) True G56670
TU66724 lncRNA upstream 91520 32381127 ~ 32381831 (-) True G56661
TU66731 lncRNA upstream 110308 32399915 ~ 32400310 (-) True G56668
TU66735 lncRNA upstream 125302 32414909 ~ 32415460 (-) True G56672
TU66925 lncRNA upstream 355085 32644692 ~ 32647936 (-) True G56827
XM_034302784.1 mRNA downstream 13638 32191850 ~ 32230995 (-) True jag2a
XM_034302613.1 mRNA downstream 55786 32132481 ~ 32188847 (-) False esr2b
XM_034302615.1 mRNA downstream 55787 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA downstream 55787 32131447 ~ 32188846 (-) False esr2b
XM_026939147.2 mRNA downstream 55788 32132481 ~ 32188845 (-) False esr2b
XM_034302946.1 mRNA upstream 25851 32315458 ~ 32331216 (-) False dcdc2b
XM_034302945.1 mRNA upstream 25851 32315458 ~ 32331216 (-) True dcdc2b
XM_034302944.1 mRNA upstream 25851 32315458 ~ 32330739 (-) False dcdc2b
XM_026939422.2 mRNA upstream 41786 32331393 ~ 32336477 (-) True iqcc
XM_034301663.1 mRNA upstream 49627 32339234 ~ 32345727 (-) False ccdc28b
TU66291 other downstream 406398 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 415149 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 643948 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 696000 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1384127 30860436 ~ 30860506 (-) True trnag-gcc_4
TU66783 other upstream 61194 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 84729 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 84739 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 364229 32653836 ~ 32661562 (-) True slc66a3
TU67278 other upstream 426220 32715827 ~ 32728741 (-) True G57124

Expression Profile