RNA id: XM_034302839.1


Basic Information

Item Value
RNA id XM_034302839.1
length 2926
RNA type mRNA
GC content 0.48
exon number 12
gene id galnt7
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3843479 ~ 3869764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctttccgcTGCAATAAAGGGAAGTGTGGAAGCATTAGGAGGGTTCACACACTCGCCAGGGCTAGCAGTGAGCAGTAAGCTAGCTCTGGGTGGATCAGGAGGGTGTTGAGGCTTGTGTCAGCACCACAGCTTGCACCATGAGGCTGAAAGTCGGATTTATTCTCCGGAGTTTGTTAGTAATTGGCACATTTTTGGGGCTGGTGTTGCTCTGGTCCTCTCTGTCTCCAAAACCCGGCGATGAAACCCCTTTCGGCAAACCCGAAGTAAGAGAAGCCCCGAACCCCGACCCGAATCTTCCGAATGGCATCGGAGATCAGTTCAAGGCCGTGGTGCCCTGGCCTCATGTGGAAGGAGTGGAGGTGGACCTGGAGGCCATCAGGCAGAGAAACGGAGGAGAAAAGCAGAACCCGAAGTTCAGAGCTCAGGACCAGCAGAACATCATTCAGAAGCAGTTCATCACATTTAAACCCCACACTAATATCTACTCGGACCCGGTTCTGCGCAGAGGGACCCTGGGCAACTTTGAACCCAAGGAACCAGAGCCTCCAGGAGTCCCCGGAGGACCGGGAGAGGGCAGCAAGCCGTTCATTCTGGGAGCGGAGTATAAAGACTCGGTGCAGGCCAGCATCAGGGAGTTTGGATTCAACATGGTGGCCAGCGACATGATCTCACTGGACAGGAGCATCAGTGACTTACGGCTTGAAGAGTGTAAGTATTGGCACTATGATGAGAACCTGTTGACGGCGAGCGTGGTGATCGTGTTCCATAACGAGGGCTGGTCCACTCTGATGAGGACCGTACACAGCGTCATCAAGAGGACGCCCCCCAAATACCTCGCCGAGATCGTCATGATCGACGACTTCAGCAACAAAGctCACCTGAAGGAGAGGTTAGAGGAATACATTAAGCAGTGGAACGGACTGGTCAAGCTGTTCCGcaatgaaaagagagaaggacTGATCCAGGCCAGGAGTATAGGAGCACGCAAAGCCACTGTTGGACAgGTGTTAATCTACCTGGATGCTCATTGCGAAGTGGGGATAAATTGGTACGCTCCACTTGTGGCCCCCATATCCAAAGACCGAACGGTATGCACGGTGCCTCTCATTGACTCCATTAATGGCCAGACCTACGCCATTGACCCCCAGGGCGGGGGGGACGAGGATGGCTTTGCCAGAGGAGCATGGGACTGGAGCATGCTGTGGAAGCGCGTGCCGCTCAGTAACCGAGAGAAGGACATGAGATTAACTAAAACCGAGCCTTATCGgtccCCTGCGATGGCTGGTGGGCTGTTTGCTATAGAACGAGATTTCTTCTTCGAGCTGGGCCTCTACGATCCTGGTCTCCAGATCTGGGGTGGAGAGAATTTCGAGATTTCTTACAagaTCTGGCAGTGTGGAGGGCAGCTGCTGTTTACTCCCTGCTCTCGTGTGGGACACATCTACCGTCTGAAGGGGTGGGCCGGAAACCCGCCCCCTGCTCATGTAGGCTCCTCCCCCACGCTTAAGAACTACGTGCGGGTGGTGGAGGTGTGGTGGGACGAGTATAAGGATTATTTCTATGCCAGCCGACCCGAGACGCTCACCCTGGCGTACGGAGACATCAGCGCTCTGAAGAAGTTTAGAGAAGAGCATCGCTGCAAGAGCTTCAAGTGGTTCATGGAGGAGGTCGCCTACGACATCCCCATCCACTACCCACTGCCTCCGAAAAACGTGGAGTGGGGCGAGATCCGTGGATACGAAACAGGTTACTGCATTGACAGCATGGGACACACCAACGGGGGAAATGTGGAGATCGGTCCGTGCCACAGGATGGGAGGGAATCAGCTGTTCCGAATAAACGAAGCGAATCAGCTGATGCAGTATGACCAGTGCCTGACGAAGGGCTCGGACAACACcgtcatcatcacacactgcaaCCTGAAGGAGTTCACTGAGTGGAGGTACTTTAAGGATCTGCATCGGTTTACACACATACCCACAGGAAAATGCTTAGACCGCTCAGACGTCTTGCACACGGTCTTCATCTCTGACTGTGACCACAGCAAGAGCACTCAGAAATGGGAAATGAACAATATCGTGGCCGTGTGAAGCCGAAGCCGAGGACGTTGCACATACAGAACTGAAATCTCACTGACCTTCTCCTGCACCAGGGGTTAACAGTGTAAATACAGCTGAAGGAaaacttttcatatttttgtcatCTCCAGTAATGAGGCCATGTTCTGATATTgccatctttatttttatatgtatatattttactcCATGGTGGATGAAGTTTACAGGTGTTCAGTCTTCAGTGTTGTAGGAAGACGCACACGCATGAAGATGAGTGATCTAATACCACTGTTTTTAATTCTTCACCGCTCCATTAGACCAAGACTTTACTGTCcacctagttttttttttttttttttaacctgacactgggcatttttattttattttttcttccagAGAACTTCTCTCCAATATTCTGCTTTTTTGGCACAACTTTAAATCCGACGGctgctttttttccattttatggGGAAAATCTGGGACGATGAATATACTACGGAAAGGGCTTACAATGTAGAGGGTAATCATGAAAATAAGgggatatatttattttatttttttttatattgcatcAATGTCTGCTTGGAAACaggaatatttaataataattatgtatgTGAAATCTTTTGATTGAAACTTAAGGCAAATCACTGGATAAGCACTGTTGAGGGTGAAAGGTATGTcacatgagcaaaaaaaaatacacaccgTGTATGCTATTTTTTTGTACAATGTAAATATGAGCGTTTCTAAATTAACATTTTGAGATGCAGTGGGCCTTGTAATGAAGGTGTAAATATCTAACTTGTAAAATTGTCAGTGCTGTTTTCTCAAGAGAATAAATTGAACCTTTTTACCACT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47974 lncRNA downstream 2319 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA downstream 2319 3810868 ~ 3841160 (-) True G40522
TU47972 lncRNA downstream 2537 3838818 ~ 3840942 (-) True G40521
XR_003404606.2 lncRNA downstream 5297 3819051 ~ 3838182 (-) True LOC113545372
TU47763 lncRNA downstream 130646 3702221 ~ 3712833 (-) True G40323
XR_004577552.1 lncRNA upstream 618782 4488546 ~ 4496696 (-) True LOC117596430
TU48257 lncRNA upstream 668295 4538059 ~ 4539526 (-) True G40770
TU48440 lncRNA upstream 795758 4665522 ~ 4665725 (-) True G40936
TU48442 lncRNA upstream 797442 4667206 ~ 4668993 (-) True G40938
TU48466 lncRNA upstream 869620 4739384 ~ 4739711 (-) True G40962
XM_026931999.2 mRNA downstream 143959 3683443 ~ 3699520 (-) False cep44
XM_026931975.2 mRNA downstream 143959 3683443 ~ 3699520 (-) False cep44
XM_026932008.2 mRNA downstream 143959 3683443 ~ 3699520 (-) True cep44
XM_026932029.2 mRNA downstream 143959 3684160 ~ 3699520 (-) False cep44
XM_026932020.2 mRNA downstream 143961 3683443 ~ 3699518 (-) False cep44
XM_026933253.2 mRNA upstream 7426 3877190 ~ 4089517 (-) True galntl6
XM_026933264.2 mRNA upstream 22772 3892536 ~ 4089518 (-) False galntl6
XM_034302098.1 mRNA upstream 22920 3892684 ~ 4089518 (-) False galntl6
XM_026939659.2 mRNA upstream 360058 4229822 ~ 4248823 (-) True LOC113542265
XM_034303190.1 mRNA upstream 360058 4229822 ~ 4231753 (-) False LOC113542265
trnah-gug_3 other downstream 808926 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 809542 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 810676 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1669728 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1863948 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 675820 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1333942 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1355266 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 1886947 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3291710 7161474 ~ 7204151 (-) False lef1

Expression Profile