RNA id: XM_034302862.1


Basic Information

Item Value
RNA id XM_034302862.1
length 1422
RNA type mRNA
GC content 0.50
exon number 10
gene id snapc3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1810150 ~ 1820845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGCGGAAGTAAACATGGCTGAAGGCGGCGGTACGAACGTATTGGACGAAAACGTGCCGGTTTATGAACACGTCGAAGTGAACTCCAAGCCATTTCACCTCGGTAGCTTTAGAGATTTATGGCTCAGCGTGCTGAAACCGGAAGATTACTCTTTTAGCCAGACTTCCGGTGAAATAGAAGAAGCGCAGTTTATAGAGGAGATGGGAATCACACCGGAAACGCTGGAGGAGCTTAAAACCATCTGCAGcccTGATTCTCTTCGCTGTCACGCTGAAGATGAAGCTCCTGATCCTGACGTGGTTCCTGCAGACCCTCAGCTCGCCACGTTAAAACTGAGGAAGAGGAGACTGGACTATAAGAAGACTCTCATACGGGACAACGTGGGACGACACGACGCGTACGCTAATGAGATgGAAATGCTCTCTCTGGGCAGAAGAGCTGAAGACGCCTCAGACACCGTTCCCGAGGGAGAACTCGTCCTCACCTTCAACGTCATCTACCCCGTCCTGTTTGAGCGAtttaaaCACGTGAGGGCGTATCAGACGCTGCATGTTCTGGGCTCGCAGAAGCTCACCGAGCTCAGAGACGCCATCTGCTGTGTGAGCGACCTGCAAGTGTTCGGAGAGTTCAGTAACACACCTGACATGGTGCCTCAGTTCATCAGcaagGATCACTACAAATCCGCGTTCTTCTTCTTCGAGGGAATTTTCTACAACGACATGCGCTTCCCCGAGTGTCGCGATATCAGCGCGGTGACGCGTGAGTGGACCAAAAGCAGAGACTTCCCCGAGTTTAAAACGGCTAAGATGGAGGAGGCGACGTTCAGTGAGCTGAGGGTGAAGGTGGGATTTCCGTACCTGTACTGCCATCAGGGAGACTGTGAACACGTCCTCATCCTCACAGACATCAGgcTGATCCATAAGGACGACTGCTTAGACAGGAAGTTGTATCCACTGCTGTCACACAAGCACAGGGTCGTGACCCGGAAGTGCTGCGTGTGTCACCTGTACATCAGCAGATGGATAACGACGAACGACGCTCTTGCTCCGATGGATCCGTGTCTGTACTGTGATCAGTGTTTCCGTCTGCTGCATTACGACCAACATGGCAACAAGCTGGGCGACTTCCAGGCGTACGCTTACGTCGACCCCGGAGCGTTCAACTGAGCGCGctccacactccacactccacactccaaATCTGCTGCTTTACTTCTTaccttgtatttttttgtataaacaTTTGTACGTTTATTTTCCTCGGTGTTTACTTGTAGCCAggaatctttttgtttttgacaaaatgatCATTTGTTGATGTTCAACATTTCGAGagttatttgaatttaaaagcTAAAGCAGTGCTGTAAATAACATGTTCCTGTTCACGTCTCTAAAATAAAGTTTGGTTGTGTATCGCGA

Function

GO: NA

KEGG:

id description
K15210 SNAPC3; snRNA-activating protein complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577896.1 lncRNA downstream 119156 1686729 ~ 1690994 (-) True LOC117596905
TU46836 lncRNA downstream 130347 1583988 ~ 1679803 (-) True G39533
TU46704 lncRNA downstream 175185 1217287 ~ 1634965 (-) True G39412
TU46824 lncRNA downstream 253605 1555728 ~ 1556545 (-) True G39521
TU46782 lncRNA downstream 314084 1494621 ~ 1496066 (-) True G39484
TU46882 lncRNA upstream 3003 1823848 ~ 1824596 (-) True G39570
TU46903 lncRNA upstream 23920 1844765 ~ 1846362 (-) True G39589
TU46910 lncRNA upstream 31168 1852013 ~ 1853638 (-) True G39596
TU46925 lncRNA upstream 51088 1871933 ~ 1877225 (-) False G39603
TU46970 lncRNA upstream 117835 1938680 ~ 1941389 (-) True G39624
XM_034303177.1 mRNA downstream 441138 1270445 ~ 1369012 (-) True cntln
XM_026910962.2 mRNA downstream 656800 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA downstream 656800 1146129 ~ 1153350 (-) True anp32b
XM_034301860.1 mRNA downstream 740335 1065387 ~ 1069815 (-) True ints12
XM_026910944.2 mRNA downstream 803100 1004477 ~ 1007050 (-) True LOC113524614
XM_026911038.2 mRNA upstream 72741 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_026912185.2 mRNA upstream 126530 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA upstream 126530 1947375 ~ 1964907 (-) True ccdc149b
XM_026912183.2 mRNA upstream 148918 1969763 ~ 1979549 (-) True lgi2b
XM_034302863.1 mRNA upstream 180604 2001449 ~ 2007253 (-) True aip
TU46700 other downstream 508647 1293044 ~ 1301503 (-) False cntln
TU46693 other downstream 520335 1285808 ~ 1289815 (-) False cntln
TU46718 other downstream 529815 1270541 ~ 1280335 (-) False cntln
TU45475 other downstream 1494622 314981 ~ 315528 (-) True G38400
TU45455 other downstream 1542351 263486 ~ 267799 (-) False LOC117596825
TU46918 other upstream 51088 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 51088 1871933 ~ 1877225 (-) False G39603
TU46930 other upstream 51088 1871933 ~ 1877225 (-) False G39603
TU46931 other upstream 51088 1871933 ~ 1877583 (-) True G39603
TU46993 other upstream 156481 1977326 ~ 1979531 (-) False lgi2b

Expression Profile