RNA id: XM_034302866.1


Basic Information

Item Value
RNA id XM_034302866.1
length 1419
RNA type mRNA
GC content 0.42
exon number 8
gene id tmem134
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2109068 ~ 2118767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGTAGTAGAGAATCTTGACGTCATTTTTACGCGCCGGAAGGAAACGGctaacagaaaaagaaagacgcTAGGTATCTAGCTAAACTAGGAAAAAGTTCCGTGCAAAGTTTTTGTTCGTGTGAATGCGcgaattttaatattttgaaacGAATTTATGTTTTCTCCACGCACGGTTACCTAGGTAACATCATGGCGTAAATGTGAATCTCCGCACACTAAcgcacaaaaaaacaacaacaacgacaTGAGCGCCTGAGGGTCCGTAACCATGGCGAAGCCGTTCACCATCGACGATGCCTTCTCAttggagggggaggaggaagGGGCGGGGCCAGAGGAGGATTTGGACGGATggaaggatagagagagagagcgggatgGAGAGATGACGTTCGGCCCCCTGACTTTCTCCAAACCACAGAGTCTTCCCTCCTCCACCGGAGCGATGGATCACAGCAACCTCAAATACCAGAACCTGGAGAATGAAGAGGCTTTGGGCAGTCCTGTAAACTCCACCTTCAACAACCTTTTTAAAATCAGtgatccAGCCACACTCTCCTACTGCAGCTCTCAGTGGTCATTCAGCACACTCAGCTCCGTTACACAGCTCTCTGCACACTGCTGcggGTGGACGTCTCATCctttaataaaaaagaacagGAGAGTGGTGCTCGCCtcattcctcctcctcatcactgGAGTCGCTCTGATTTTTACAGGCATTGTCCTTGAGTTAAACCCACATGCAGAGGTTTCAAGTGCGATTTTCTTCGTCTCTGGATTTCTTCTCTTCATTCCTGgtgTTTACCACGTGATCTACATAAGCTGTGCTGTTAGAGGGCGAAGGGGATTCAAGTTCTTTTACCTGCCGTACTTTGAGAAAtagtgactctctctctctctctctctctctctctctctctctgtctcgcttcAGATTTCTCCAGAgcctttcattttttaaaaaatgttttcaatcaatcacaaaatacagaaatgaggTGAAGCTCTATAGGTAATGCTTTACAAAAAGATTCCCTTAATTAACATTAGTTAACAAATCATCAATGTGAACAATAATACaccattaataatattaaagtaatcaacatttatattaattgaATTGTTTACacagtaacatttattcattaattactgaaaataatgttttacaAAAAGCTTGCGCTGGTTAATTTGTGGAAATCTAATATTTAATCCCACTGACCTGAGTTCATCTGatcaatattttatcatttatttccatGGCATGGATTCATCTTTCATTATTGATGAAATGCAAGagataaaacactccatgttgtgctgttacgggaaaataatcaacgtctgGGTGGAGTGGTGCAgggtgaagcggagttactgttaccactctgtaaataattgattaatttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46013 lncRNA upstream 52243 2055651 ~ 2056825 (+) True G38796
TU45970 lncRNA upstream 133438 1921838 ~ 1975630 (+) True G38758
TU46037 lncRNA downstream 4694 2123461 ~ 2124718 (+) False G38812
TU46035 lncRNA downstream 5303 2124070 ~ 2126667 (+) True G38812
TU46052 lncRNA downstream 46403 2165170 ~ 2165485 (+) True G38826
TU46126 lncRNA downstream 192884 2311651 ~ 2312451 (+) True G38895
TU46183 lncRNA downstream 292434 2411201 ~ 2426600 (+) True G38948
XM_026941226.2 mRNA upstream 17725 2025488 ~ 2091343 (+) False stox2a
XM_026941234.2 mRNA upstream 17725 2048028 ~ 2091343 (+) True stox2a
XM_026932237.2 mRNA upstream 90108 2014948 ~ 2018960 (+) True ing2
XM_034302872.1 mRNA upstream 111803 1983647 ~ 1997265 (+) True cdk2ap2
XM_034302855.1 mRNA upstream 169142 1920162 ~ 1939926 (+) True si:dkey-117m1.4
XM_034302865.1 mRNA downstream 33162 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA downstream 33812 2152579 ~ 2163692 (+) False dctd
XM_034302870.1 mRNA downstream 55820 2174587 ~ 2184648 (+) True LOC113544637
XM_034302871.1 mRNA downstream 75182 2193949 ~ 2199535 (+) True LOC113541301
XM_026933437.2 mRNA downstream 1074534 3193301 ~ 3253363 (+) True vegfc
TU45993 other upstream 17762 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 17847 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 18227 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 111816 1983657 ~ 1997252 (+) False cdk2ap2
TU45743 other upstream 940429 1166040 ~ 1168639 (+) False trmo
XR_004577910.1 other downstream 46856 2165623 ~ 2165784 (+) True LOC113546173
TU47789 other downstream 1713182 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 3144815 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 3199767 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 5085183 7203950 ~ 7221023 (+) True G42075

Expression Profile