Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034302871.1 |
| length | 857 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 7 |
| gene id | LOC113541301 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 2193949 ~ 2199535 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| id | description |
|---|---|
| K01493 | comEB; dCMP deaminase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46052 | lncRNA | upstream | 28464 | 2165170 ~ 2165485 (+) | True | G38826 |
| TU46035 | lncRNA | upstream | 67282 | 2124070 ~ 2126667 (+) | True | G38812 |
| TU46037 | lncRNA | upstream | 69231 | 2123461 ~ 2124718 (+) | False | G38812 |
| TU46013 | lncRNA | upstream | 137124 | 2055651 ~ 2056825 (+) | True | G38796 |
| TU45974 | lncRNA | upstream | 227405 | 1941845 ~ 1966544 (+) | True | G38761 |
| TU46126 | lncRNA | downstream | 112116 | 2311651 ~ 2312451 (+) | True | G38895 |
| TU46183 | lncRNA | downstream | 211666 | 2411201 ~ 2426600 (+) | True | G38948 |
| TU46198 | lncRNA | downstream | 228277 | 2427812 ~ 2431087 (+) | True | G38962 |
| XR_004577844.1 | lncRNA | downstream | 1201260 | 3400795 ~ 3403106 (+) | True | LOC117596855 |
| XR_004577906.1 | lncRNA | downstream | 1315566 | 3515101 ~ 3525121 (+) | True | LOC117596918 |
| XM_034302870.1 | mRNA | upstream | 9301 | 2174587 ~ 2184648 (+) | True | LOC113544637 |
| XM_034302865.1 | mRNA | upstream | 30257 | 2151929 ~ 2163692 (+) | True | dctd |
| XM_034302864.1 | mRNA | upstream | 30257 | 2152579 ~ 2163692 (+) | False | dctd |
| XM_034302867.1 | mRNA | upstream | 75182 | 2109068 ~ 2118767 (+) | True | tmem134 |
| XM_034302866.1 | mRNA | upstream | 75182 | 2109068 ~ 2118767 (+) | False | tmem134 |
| XM_026933437.2 | mRNA | downstream | 993766 | 3193301 ~ 3253363 (+) | True | vegfc |
| XM_026941131.2 | mRNA | downstream | 1096998 | 3296533 ~ 3306323 (+) | True | LOC113543098 |
| XM_034303035.1 | mRNA | downstream | 1108299 | 3307834 ~ 3325642 (+) | False | asb5b |
| XM_026941145.2 | mRNA | downstream | 1108300 | 3307835 ~ 3325585 (+) | True | asb5b |
| XM_026941154.2 | mRNA | downstream | 1108359 | 3307894 ~ 3325585 (+) | False | asb5b |
| XR_004577910.1 | other | upstream | 28165 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 102643 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45995 | other | upstream | 102728 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU45994 | other | upstream | 103108 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45964 | other | upstream | 196697 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU47789 | other | downstream | 1632414 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_003404319.2 | other | downstream | 3064047 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 3118999 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 5004415 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 5449663 | 7649198 ~ 7666033 (+) | False | naa15b |
