RNA id: XM_034302925.1


Basic Information

Item Value
RNA id XM_034302925.1
length 2025
RNA type mRNA
GC content 0.49
exon number 6
gene id zfand3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29109442 ~ 29135365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACagaagatgaacatggaggcatccatgttttttttgttgttgttttgtagcttgaatgcatGGAGGTCAAGGTCCAAATTCCCACTTACAAGGTCGAGCAAAACTATGAACCTCTGCTCCAAATGTTTTGCAGacatcCAGAAGAAGCAACCAGACGAGGACTGCGCTTCAGAGCCTACCCCCAGCTCCAGCAATAGCCAATCAGCCGTCTTCTGTAACGAGacaagcagcagcagtagcCAAACCCTGTCCTCCGGCTCTGAGGGGCCGTCCACAGATGCCACGCCTCTCTCTAAACAGGAAGAAGTCTCGAGTACAGACACAGCCCGAGGCACGCTATCTACTCCCACGAAACGGCCCTGTGATACAGCCTCAGGTTCGGAGAGCGAAGCCTCCCCAGAGAAGCGGGTGCGTGTCGGCGAGTCCTCTGAAGAATCTCAGCGAGGGCCTAAGCAGAAGAACCGCAGGCGTTGCCATCGCTGCCAAACCAAACTCGAGCTTGTACAGCAGGAGCTGGGCTCATGCCGCTGTGgatacGTATTCTGCATGCTGCACCGGCTGCCCGAGCAGCACGACTGCCTGTTCGACCACTTGGGTCGCGGGAGAGAGGAAGCCGTGCTTAAGATGGTCAAGCTGGACCGTAAGGTGGGCCGATCCTGCCAGCGCATCGGAGAGGAATgttcctgaacacacacacacacacacacaaaaacacgcacacacctgCATACACAAACACCCCAATACTGTATACTCCCCTTCCAGTCTCACTTCCCCTGATTCAACTGAGGCCAGTGGTGCTTAGATCCTCAGTGCTGAACAATGTAAAACACACCCCACTCACTTAGCActgttcctacacacacacacacacacacacacacacttgcaatCTCCTGGCCGTGACACTCCTCACAACTGTCTTAATCTCCTTCCTGTGGATCTTGTTTGAAGAACACCAtctcaaaacaaagaaaggagaATCATCTACTGGCGTTTTTGGCATGCTGCcatcatctctgttttttttttttcctccctcctccagTTTCGATTCTACAGTCTATcataatttaaaagaaagaatCACCTGTTGTTGTTATCTCAATTTAGGCTTTCAAGTATAGGTCACTAGGTCAGGGGTCATTCCCGAATTCCCAACATGAAAACCTCCATCAGGCCACAAAGCTGAGGAAAGCGTGATCTGTGATCAGGACCGACCTTTGACCTCATGAGAGGAATCGGGTTCCACCCTCTAACCTCCCGACACCCTGACCTCCTTTCATCCTCGACCTCCTTtcgagaattttttttcttttgcctccAGACGCTGTTATTGATATTAAACCTGAATTCACGACTTCCTCACACTTCCTTCAGTGGATCGGAAATGGAGTTTGACGTGGATCGCACACCCTCACGTCCTTCGTTGGCCCTGGAGATGCCCTCTGCTGTCACTTTAGAGGCAGCGCTATGCCTCTATTTCTCACACTCATTCctctgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacgcataGTCATACATACACATGAGCTGTTTTGATATATTATGTTCATATACACACAACCCACATGTGGTCTGTGTGTGCCCAGCACATGGACAGAAGCTAAATCGGTACCCTTCGGACCGGGTTCATTAGGGATTGTGCGCCCCAGGGCTTTATGGGAACTGTAGTTCAGGTCTACATACACTTCTGTATACTTACAGCTCCAGTCAGACCCCATATTTAGTGACACTCTGCCTCCAGAAAGCTACAGTTCTCAAAATGATTCTTTGCTCCTTTTACTTCTTTATCTCCCCACCATCCCTGTGTTCTGGCCCTCCTTTTTATTCATCCTTCACTTTTCTTCCCACTTCCAGTTTTGCACTTtccctcccttttttttccccaacacacAGTTATCTCGTTTGTCATGTTTTCCAAGTGGCTTTAGGAGGGACTAGGTTTTGAAGATTGGAGGCAG

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63419 lncRNA upstream 612836 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 625544 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 641459 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 660578 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 671605 28436980 ~ 28437837 (+) True G53629
XR_003404270.2 lncRNA downstream 316531 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 545161 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 548644 29684009 ~ 29684999 (+) False G54958
TU64777 lncRNA downstream 609798 29745163 ~ 29748504 (+) False ablim1a
XR_003404265.2 lncRNA downstream 730391 29865756 ~ 29870830 (+) True LOC113542139
XM_034302957.1 mRNA upstream 2895 29094691 ~ 29106547 (+) True btbd9
XM_026939049.2 mRNA upstream 2895 29097607 ~ 29106547 (+) False btbd9
XM_026939047.2 mRNA upstream 3623 29094690 ~ 29105819 (+) False btbd9
XM_026939137.2 mRNA upstream 16203 29084646 ~ 29093239 (+) True glo1
XM_034302906.1 mRNA upstream 36482 28522346 ~ 29072960 (+) False macrod2
XM_026939342.2 mRNA downstream 28050 29163415 ~ 29361109 (+) False LOC113542066
XM_026939341.2 mRNA downstream 28221 29163586 ~ 29361109 (+) False LOC113542066
XM_026939339.2 mRNA downstream 29264 29164629 ~ 29361109 (+) False LOC113542066
XM_026939340.2 mRNA downstream 34919 29170284 ~ 29361109 (+) True LOC113542066
XM_034302991.1 mRNA downstream 131971 29267336 ~ 29361109 (+) False LOC113542066
trnav-aac other upstream 1528 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 3926 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 661131 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1902197 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1903047 27197909 ~ 27206395 (+) False znf451
XR_004577899.1 other downstream 576893 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 802183 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1218957 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 1344567 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 2650420 31785785 ~ 31796326 (+) True G56222

Expression Profile