RNA id: XM_034302928.1


Basic Information

Item Value
RNA id XM_034302928.1
length 1334
RNA type mRNA
GC content 0.41
exon number 11
gene id zgc:153169
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12769003 ~ 12774087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATTTCCggtaaaatgtaaacaatcaaaAAGTTTTGCCTGTAGATAGCGAAGAGTGCACAACGTCGAAGGTGTTGAGCGGTCACTCAGACAACACTTAAAAGGGCAAGCTGTACCCGGGTACACATGCACAGAGACTACATAAGGCATACATCATGGCTGCTGTGGGCACTTGGTCCTTCTCCCTCCCTGCTGTAGAAAGAATGCGGTGCATGATTCTAGCTGGACAAAGTTCCACTGATGTTGTAGAGAGTGCAATTGCAGATGTTGAGAATGACGTGCAGACAGGCCGTTATATAGTTGGAAGAGGAGGCTTCCCCAATAACAAGGGAATAGTTGAATGTGATGCAGCAATAATGGAAGGTGTGCCTGGGAGATTTGGGGCAGTAGCTGCATTGCGCGGgGTAGGGCAGCCATGTCGAGTAGCACGCCAAGTAATGGAGAGAAGTCCTCACAGCTTTTTAGTTGGTGAAGGAGCTGAAGCTTTTGCACGGGAGCAGGGTTTTACCATTGAgcccaataacagcatgctctcAGACCATGCAGCCACTGCGTATCAGGAATTTCTTGAAAATGGGAAACAAGTCAGAGGCCATGATACTATCAGTCTTATTGCTTTGGATCTTGCAGGAAACATAACTGTAGGTGTTTCTACATCAGGAAAACCCTTCAAGGCTCCAGGGAGAGTGGGGGACTCTCCACTCCCTGGTTGCGGCCTATATGCTGACCACAGAGTGGGTGCTGCAGCAGCATCAGGAGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCAGATTGTACAGTTGATGAGACAGGGTTTGTCTCCTAAAGAAGCCTGTTGTTCTGTCCTTGCTGATATAAGGAAAAGAACTGGAGAAGACAAATGCTTTGAGATTGGGCTTATTGCCTTAAACATGAAgGGAGAGGTTGGTGCAGCTTCCTCAGTGGAATTCCCATATACTTTCTGGAAGCAGGGAATGGATTCAGTGGAACAACATGTCCTTTCTTATTAAATTTCCTCTTCCTTCTCAACAGTATAAACTTTCAAATATGCAATTTCAAGAGATAaaaatcttgtaaaaaaaaaaaaaaatcttatgtaCAGCAGTATGAATTATATAATAGTAATCTGTGTACATAATTGCTACTGTACTGAAGTATTTCATTgtgtaatttataatttattagtataatttggaattttattatatgccattttattttgttttttacataaTGGTTGTGGGTTATAATTACAGGCAGTTACTCATCAGAAAGAATTATAATATTATGTGATTCCTATTgtaatattaaaggaataatctATCTGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577841.1 lncRNA upstream 29777 12733432 ~ 12739226 (+) True LOC117596851
TU53325 lncRNA upstream 94380 12674408 ~ 12674623 (+) True G45170
TU53285 lncRNA upstream 120597 12647895 ~ 12648406 (+) True G45153
XR_004577794.1 lncRNA upstream 125699 12639317 ~ 12643304 (+) True LOC117596823
XR_003404309.2 lncRNA upstream 269984 12489514 ~ 12499019 (+) True LOC113542444
TU53595 lncRNA downstream 36832 12810919 ~ 12811250 (+) True G45351
TU53604 lncRNA downstream 46769 12820856 ~ 12821389 (+) True G45360
TU53620 lncRNA downstream 95916 12870003 ~ 12870223 (+) True G45376
TU53723 lncRNA downstream 186003 12960090 ~ 13031136 (+) True G45453
TU53729 lncRNA downstream 237859 13011946 ~ 13017600 (+) True G45459
XM_026936770.2 mRNA upstream 6362 12759697 ~ 12762641 (+) True pdcd2
XM_026945265.2 mRNA upstream 45762 12718905 ~ 12723241 (+) False ccsapb
XM_026945276.2 mRNA upstream 45762 12718907 ~ 12723241 (+) False ccsapb
XM_026945296.2 mRNA upstream 45762 12719057 ~ 12723241 (+) False ccsapb
XM_026945287.2 mRNA upstream 45762 12719058 ~ 12723241 (+) True ccsapb
XM_026937247.2 mRNA downstream 335 12774422 ~ 12782694 (+) True rab1ab
XM_026945669.2 mRNA downstream 34996 12809083 ~ 12844674 (+) False sertad2b
XM_026945675.2 mRNA downstream 34997 12809084 ~ 12844674 (+) False sertad2b
XM_034302544.1 mRNA downstream 56619 12830706 ~ 12844674 (+) False sertad2b
XM_026945660.2 mRNA downstream 56619 12830706 ~ 12844674 (+) False sertad2b
trnat-ugu other upstream 101117 12667814 ~ 12667886 (+) True trnat-ugu
TU53286 other upstream 125808 12639836 ~ 12643195 (+) False LOC117596823
trnay-gua other upstream 132597 12636320 ~ 12636406 (+) True trnay-gua
XR_004577785.1 other upstream 1002589 11745749 ~ 11766414 (+) False LOC113544122
trnag-gcc other upstream 1061998 11706935 ~ 11707005 (+) True trnag-gcc
XR_004577802.1 other downstream 155472 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 155472 12929559 ~ 12936802 (+) False spef1
XR_003404144.2 other downstream 208319 12982406 ~ 12999962 (+) False col17a1b
TU53738 other downstream 258192 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU54033 other downstream 724005 13498092 ~ 13501046 (+) False pcbd1

Expression Profile