RNA id: XM_034302945.1


Basic Information

Item Value
RNA id XM_034302945.1
length 4142
RNA type mRNA
GC content 0.44
exon number 14
gene id dcdc2b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32315458 ~ 32331216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTTTGTTTACGTTCTATGAAATAATGCGTGTTGTCTTTAGTACGGCGAAGTGAGGGGTCATTAGGAAAGGTCGCTAGATTTATGTGCGCTGAACCTTTTGTACTTCTgtacgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccttccttctcccCCTCTTTTGTTGTTACCAGTGATCGCTGGCAATGCTGCCATAGCAACCAGGAAacactccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggatagaCACTAAACGCTAAACGCTTGAGCTGGTGAGGAGCGCAGGACGCTGTAGGAAAGGAGATATATTCAGTCTGATGCTAGAGGTTGTAAGGCTTCTGTGGATGAACTGATATTCTttatagTGGGAAATCAGATTTTGCCCGGGTCAGGCGTGATGGCCTCCAGTGGAGTAACTGCCCTCCTGCCTCCAGTGAAGAGCGTGGTGGTGTACAAGAATGGAGATCCCTTCTTCTCAGGGAGGAGGTTTATCGTGAACCAGAGGCAGGTCGCCACTATGGAGTCTTTCCTGAACGACGTCACTCTCAGCATCGGAGCCCCGCTGGCCGTGCGTACGCTCTACACGCCACGCCACGGGCACCGCATACCCGATCTGGAGCACCTCCAGCAGGGGGCGCAGTACGTGGCTGCCGGATTCGAGAGGTTCAAGAAGCTCGATTATCTGAGTCTGGGGATGAAGAGAACTCCAGTGGCTCGAACCGGAGACGCCatgcagGCTAAAGGACTCAGCAGACCCAACGTGTCCGCAAAATGGAGGAAGGTTATAACTCTGCCCTGCATTATACACGTGTTCAGGAATGGAGACGTCCTCAGTCCTGCCATGCGCTTCATCATTCCTCGGAGTCTGTTGAAAAATTTGGAGCAGATTCTCAGCCTGGTCTCGGAGAAAGCCATGCTGCGCACGGGCGCCGTTCgcagGCTGTGCACCCTCGACGGCGTGACGGTGACCTCGGCGGAGGAGCTGGAGAGCGGCCAGTGTTACGTAGCCGTCGGTGCCGAGCGCTTCAAGAAACTTCCTTACGTGGAGCTGCTGCTGAACAAAGCACCAGGAGGCAGTGCAGAcagACATTACGTTGCAGATCGTGGCCTGCACAGgaggtcagagAACAGGAAGTTTCCTCAAGACAGCAACAGTGACTCCGCCCTCCTTCACTCACCTGAGAGGGACGGCAGGCGCGTGAAGTCCACGGGAGACGAGGCCGAGCCGGAAGGAGCGAATCTTTCTCAGCCGCtgcagaggaggagagaaggaagAGGGGAAAGAGAGGAGAGCTCCATATTCTACGCCAAACCCGTCCGAGTGCGCAAACACAGACCCCCACACAGAGCTGCGGCCAGAAACGCAGGCAATGCGAGTGTGTTTAAGGGCGTagtgaggaggagagaggaggtgCGAGGAGCTGAGGAGGTGGCTGAGGATGAGAGCACGGCTGTGGAGCTTCCTGTAGATCAGAGAGTTGCTGAAGTCGTTCAGGACGAGGAACTTGATGAGAGCCAACCAGAAACGACAAATCAcatgcaTCAGACAGGAGCACCTGATGAGCACATGACCTCATCTGCACACTCCAGTCCGTCTCCTAGCGACAGAGAGCACACTGTGAAGGAGTACGGGCCGTCTGATGGAGAGACCTCGTTACCGAGACGGAGCTCTTCTCCGAACGGGGAGACGGAAGCGCAGGATGAGGACATACTCAGCGAAGACCTGGAACAGGAAAGAGGCCAAGATGATAAAGATGGACGTCCTCAGGAAGCTGATGAGCCGGAGACGCAGGACCACACCCGTCCTCCCTCCTCATCCTCACAGCAGAGAGAATGACCCAGATAGAAAGTATATATATCAGATACAACCGTAAATAAATACCCCCATAGTGTGTAAAGTCTAGCTCTAACCTTAATCATGTCCTGAGCGACGTTCTCCAGACTGTTCCTAATACGTAACATGTCCGTAATACAATCTCCAGACTGTTCTCTTACAGCTACGTCATGTAGACTTTACGGATCGTGAAGTTATTCGCCTGTGAATGTCTTTGACCCCCGTCATGTGATAATAGACGCTAATGAGACGCTGTTAGCCGATACGGTGCGCGATGAAGTCAGCATCACATATAAAGGAGACAAAAAAGTATCACACCACCTTTAAATATTCACCGTCACTTACGAAATATGAGCGAAAAACGTTGATCTGGGTATCTGATTAGACTAACGTgagctccaaaattattggcaccctctaAGAGAATGCGCAAAAATAATTGTAGATAAATAAACGATTTACCTTTTCTCTAACTCAACCGCTCTTATAAGAACCACTTCTGTCAGAAACCTGGCAAAATTACCGACACcccaaaaattattttaaataatggatattTGATTAGAATAGTCAACTCcaaaactattggcaccctttaagagaatgtgcaaaaataattgTAGAGAAATTACCTTTTTTTGTCTAACAAAATAGGaacttattttaataaaaatattttctctcaaaaatgtGGCAAAAATTAGTGACTGcccaaaatatttgaaataaatacaaaccaattttttttttgcataaacagttttttttttttttcaaattcattttatttgaccaaatatgtaaaaatttgGTCAGAGTTTGTAACACTGATgtatccaaataaaaaaaaccaaaaagctGTAGATAGCTGTTGAACAACAAAACTGACACCCAAATTGATTAGAATAGTCATCTACAAAATTACTGGCTTTAAGAGAAAGTTTTTGACacttaaaaattatattaaataaatccaatttttaaaaaatgttgctctGGCTCCAGAAAGTTATGAAGTTTGCGTGTAAAATCCTTTTGCTGtcataaaaaaacccaaaaaaaaaaccagccaTTTTACCACTAAGAGTTTTCAATAATGATGTTTGTTGACCTGCAAAACCAGTTAATATTTTTCATGGCCATCAAAGTTGCTGAATTGACCCTTTAAAATCTGTAATACTGAGAGTGATGCTCATCGTTCACCCCTAACAGCACACTGCACTGACTTTAAGCCTGATGTTCACGGTTCACGGTATTAGTGCGGTTTTTGTGTTAGTTTTACGATAATTCAGTAGTTAATGTTCAGGAGATCCTGTTTACGTGAAGTCTGGAGCAAAGAGTGGAATATTTTAATACTTGTGTAAATTGTTCTGAATCTGCTTCATCTTGAGCCTTGAATAGCTGTGAAAGTCTGCAGCGTGAAACTGAAACACTCGCAGTCTGAGTTTAACCCTTTACATTCCCCAGCTTCTTATTCTGTAACTGCAGTGACAGTAACATTAAAGCTACGTagctgtgagagtgagagtaagGGGTTCATGTGAACTCGTGCTTGTGTGTACGGATTTTCATGGGATTCCCAAACAAATTTAGAAAAATTGTGATTACATTTTCTTGGACCTATAGATAAATGTgaaatttttatgttttcttatttcatgTGTACTAATATTCAGGTTATATAGTATTAACAATAAACCGTCGAAAACGATGAAGAAAAATCCAGTTTGCTTTAACGTGTGAATAATAATATCACTCATAACATGGCAGGTATTTCAGTGAATTattctaattaataaaaaaaacctctattACACATTTATAGAACACTATTTACAGTAACCAGATATAAGAGTTTTTAcgattctcgattctgattgttcacggtttctcagtaacatgacccACAACATTCGGAGAAGAAAGTGAGGCTgtttatcattctttaataactaaaaaaaaaaaaaaaagtaatcgtTGGTATTTGcggtgacatgctgttataggaaaataatcaacttcaggtggTAAcgccacttcatcacaccaccctgtcgtttaTTTATTGTACTATAGCagcttgttttattccttacatatcacatatcacataATGACACTCCAGCTGTGTATTTACACTCAGGTAGTTTCGGGAATAAGAAATGGTTCTAGTTAATTTTACCAGCATGAGCCAGGTCAaccatttgttcattttgtttcctGAGGTTTACCAGAAACGTTGTGTaactgatcaaaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66733 lncRNA downstream 5503 32300306 ~ 32309955 (-) True G56670
TU66757 lncRNA downstream 71168 32243923 ~ 32244290 (-) True G56693
TU66738 lncRNA downstream 107451 32207489 ~ 32208007 (-) True G56675
TU66675 lncRNA downstream 242960 32070763 ~ 32072498 (-) True G56614
TU66724 lncRNA upstream 49911 32381127 ~ 32381831 (-) True G56661
TU66731 lncRNA upstream 68699 32399915 ~ 32400310 (-) True G56668
TU66735 lncRNA upstream 83693 32414909 ~ 32415460 (-) True G56672
TU66925 lncRNA upstream 313476 32644692 ~ 32647936 (-) True G56827
TU66932 lncRNA upstream 332665 32663881 ~ 32664343 (-) True G56834
XM_034302823.1 mRNA downstream 25851 32244633 ~ 32289607 (-) True brf1a
XM_034302784.1 mRNA downstream 84463 32191850 ~ 32230995 (-) True jag2a
XM_026939147.2 mRNA downstream 126613 32132481 ~ 32188845 (-) False esr2b
XM_026939422.2 mRNA upstream 177 32331393 ~ 32336477 (-) True iqcc
XM_034301663.1 mRNA upstream 8018 32339234 ~ 32345727 (-) False ccdc28b
XM_026939064.2 mRNA upstream 8018 32339234 ~ 32345727 (-) True ccdc28b
XM_026939505.2 mRNA upstream 15539 32346755 ~ 32354500 (-) True tmem39b
XM_034302917.1 mRNA upstream 35094 32366310 ~ 32367790 (-) True LOC117596868
XR_004577843.1 other downstream 25851 32239601 ~ 32289607 (-) False brf1a
TU66291 other downstream 477223 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 485974 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 714773 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 766825 31546360 ~ 31548633 (-) False LOC113541990
TU66783 other upstream 19585 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 43120 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 43130 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 322620 32653836 ~ 32661562 (-) True slc66a3
TU67278 other upstream 384611 32715827 ~ 32728741 (-) True G57124

Expression Profile