RNA id: XM_034302951.1


Basic Information

Item Value
RNA id XM_034302951.1
length 1871
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC113543264
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7704449 ~ 7712546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGGACTCTTTAGAGCCTTAAATAGTCTCAGATTGTCTAGTGCTACTTCTTTGTCTACTTCTGTCTCGACTTCACAAAGGGACATTTCTTCAAATCATTGTGATTTTGTATCACTGTGGTGCAATGTCTGCAAAGGCACAGGAAACATTTATTGATACAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGCTCTTCTGgaaacacaatattaggcaaaaGACTGTTCAAATCAGAGGCATCTGCAAAGTCTGTGACACAGGAATGTTTAACTGCTACAGAGATAATCAATGGCTATCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACTGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTGTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGAACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCAGTGATGACCTGGAGGGGAAAGCTTTTAAGGACTATATTAAGGAAGGAGGTAAAGAGTTCCATGATCTGTTAAAGCAGTGTGGTGACAGACACCACTGCTGGAACAATAGACAAAACACATCTGATGAGACTGTGAAAGAACTGCTAAAGGATttgaaaaagacagagacaatAAATCTAAATTCAGTGAAGACTTCCCAAGGCAACATGAACAACAACGAAGAAAACCCTTCTGCTTGTTCCTCTTATGGTGAGCAGAGAAATTGGTCAAGAGATTTAGAAACACACATGTCTAAAAATCAAatcagagttttattccttGGAATGAACAGGGTTGGAAAAACCTCAAGCATGAATATCCTTCTTGAAAAATGTGTACAAAGTGGAATCGGAGGAGATGCAGTTTATACACACCTTAGCTCTGGACTGAGTCTGAAGCTGATAGAATCTCCTGGCTTTGATGATAATCCGGAACGAATCCAGAAGGCCATCTCCAAATCTGTGTCCAACTGCCATCCAGGACCTCATGTCATTATTATAGTGCTGAGAGTGGAGCGCTTCACTCCAGCAAGAAAGACAGCCATGAAACGGGTACAAGGTTGTCTTGGAGAAAATGccagaaaacacacaatgaTTCTGTTCACTGGAGAGGATAATTTGGAGGGCAAACCCATTGACCTCTTCATTCAAGAGAATCAGCATCTCAAAGAATTAGTGAAAATACACAAGAACAGATATCATGTGCTAAATAACAGAGACACCAGCAATGAGACTCAAGTAGATGAACTGCTGAAGAAGATTAATGACctgtacaaacaaaataataaagaattttaCACAAAAGAGCAAGAATCTCCAGATCCTGATCACCAGACAGtaaTGCAGTCTGTAAAGGGAAGGTGGGAAACAGATGTAAAATGTCACACTTCCAAGAGCACTGGTGTGAATTGCCCTATAAATTGACAGAAATGATCATACATTCCTTTTAGCAAGAACAATCAGGATTCATCCAGGGATGTCTGATTACTCCAAATTTGCTCAGAGAAGATGGAGAAGAAAACCATGgagatatgtttttaaatctttgctTCTGGAGTTCAACACTAGATGGAGTCCTCGAATTATGCTCCTGATGTTGCTCCTCCTCTCAGAGACTCAATGACACTGATTGTTTAGTCTGTCCTCAATATGTCTCACTTTAAAGTTATGTTTTTCCCTTAAACTGCTGACATTTGAAAATGCACTGCTATGATGGTAGCTCAgtaagtatacagtatacagaagAATGTAACTCAAAGagaaaaagtaaattaaacgTGTACAGCATGTCAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50015 lncRNA upstream 59527 7640935 ~ 7644922 (+) True G42295
TU50006 lncRNA upstream 74344 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 229409 7473370 ~ 7475040 (+) True LOC117596850
TU49923 lncRNA upstream 282153 7422091 ~ 7422296 (+) True G42208
TU49791 lncRNA upstream 339518 7361200 ~ 7364931 (+) True G42098
TU50029 lncRNA downstream 13964 7721649 ~ 7721851 (+) True G42304
TU50032 lncRNA downstream 25757 7733442 ~ 7733655 (+) True G42307
TU50188 lncRNA downstream 158990 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 201739 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 467800 8175485 ~ 8176073 (+) True G42522
XM_026941359.2 mRNA upstream 9922 7680769 ~ 7694527 (+) True htra3a
XM_026941415.2 mRNA upstream 26590 7675236 ~ 7677859 (+) True LOC113543305
XM_026941266.2 mRNA upstream 33039 7649211 ~ 7671410 (+) True naa15b
XM_026941427.2 mRNA upstream 74309 7620555 ~ 7630140 (+) False scoca
XM_034301226.1 mRNA downstream 8355 7716040 ~ 7735909 (+) True LOC117596357
XM_026943765.2 mRNA downstream 41951 7749636 ~ 7755159 (+) True gpr78a
XM_026941926.2 mRNA downstream 49925 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA downstream 49926 7757611 ~ 7771338 (+) True cpz
XM_026945018.2 mRNA downstream 362136 8069821 ~ 8080290 (+) True lrpap1
XR_003404394.2 other upstream 38416 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 483426 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2347752 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2362699 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3869838 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 758062 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 761939 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2844574 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2886889 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3391908 11099593 ~ 11171114 (+) False dntt

Expression Profile