RNA id: XM_034302953.1


Basic Information

Item Value
RNA id XM_034302953.1
length 3475
RNA type mRNA
GC content 0.49
exon number 25
gene id tmem63ba
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26076592 ~ 26110409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctggcaacccttgCCGGCCGCCCCACTCAGTCTCTCAGCTAAGCAGCCAGTTCGACGCGACTCTTATCACAGctggtgtatttattattaattttttaatctacTTTTATTTTAGTGTCTGTTTGGGAATCGTTGAGCATGGATAACATCGCTTCTTCATGTGGTTTGTGCCGGTTTTGAGcgtttttttctcctttgagGCAGGACGTCCTGGACACACACTGAGCCGGAGAATCACTCAGCGTCTCCGCCTGAGAGCTAGCATAGGTGCTAACGCCGTGCCTGCCTTTCAACACTACAGTGAGgtggtgtgtgtggccagatccagaatgcagctgtgGTGAAGGTGCTACTTGTGCATGATGCTGTTGTTGTTCGTGCTGATGATGGCTGTGTTGGGTGAGAGTCAGGCCTGCCCAAGCTCGGGAAACTGCTCAGGCTCGGAAAACAGCACCTCCAAGGAATGGTGCTATACGGCGAGAATCCGCAGCACCGTGCTGCAGGGACTTCCGTTCGGAGGAGTGCCCACTGTCCTCGCCCTCGACTTCATGTGCTTCCTGGCGCTACTTTGTGTGTTCTCTTTCCTGAGGAAAGTAGCGTGGGATTATGGGCGTCTGGCGCTGGTCTCAGATGCAGACAggCAGGATCAGCGGTACCGGCGTCTGGACGAACGAGAATACGTGGCCTCCGCATTGCAGACGCCAGTCGATTCCCGTTACGAACGACTGACTTCGGTTTCCAGTTCCATCGACTTTGACCAAAGAGACAgcGGTTTCTGTTCCTGGCTAACAGCCATCTTCAGGATCAAAGATGATGAGATCAGGGACAAATGTGGCGAGGATGCAGTGCACTACCTTTCGTTCCAGCGCCACATCATAggtctgctggtggtggtgggcGTGCTGTCAGTGGGCATTATCCTGCCTGTCAACTTCTCAGGAGACCTTCTGGATCATAATGCATACAGTTTTGGGAGAACAACAATAGCCAACTTAAACTCTGGGAATAACCTGCTATGGCTGCACACTATCTTTGCATTCCTTTATCTGTTACTGACCGTCTACAGCATGAGGCGACACACCTCCAAGATGCACTACAAGGAAGACGATTTGgTAAAACgcactttattcattcatgGCATCAACAAATTTGCAGAAGAGAGTCAGATAAAGCTTCACTTTGAGCAAGCATATGAAAATTGCGTTGTGCTGGAAGCACGCATTTGTTATGATGTGGCCAGACTCATGTATCTGGACTCTGAAAGGAAGAAGACGGAACGCAGCAAGAAGTTCTACACTGACTTGTTTAACAGGGAACATGTGCATACAATGATcaaccccaaaccatgtggccaCCTCTGCTGCTGCGTCATAAAGGGCTGTGAGCAGAGGGAAGCAATGAACTACTACACTGAGCTGGAGTCCAAGCTGAGAGAGGATTataagaaggagaaagagaaggtcAGCACTAAGCCTCTGGAAATGGCCTTCGTCACCTTCCAGAATGAAGCCATGACTGCACTCATTCTCAAGGACTTTAATGCGTGTAAGTTTCATGGCTGTCACTGTCGACGTGAGCCCAAATCCTCACCGTACAGCAGCATCCTGCAGACACACAAATGGTCAGTCACCTACGCTCCTGACCCACAGAACGTCTACTGGGAGCACTTGTCAATAGGCGGCATATCCTGGTGGGTCCGCTGCTTAATTATCAACTGTTTACTCTTTCTCCTGCTCTTCTTTCTCACCACTCCTGCCATCATCATATCTACCATGGACAAGTTCAACGTTACAAAACCTGTAGAGTACCTGAATAATCCCATAATCACCCAGTTCTTCCCCACTCTGCTCTTGTGGTCCTTCTCCGCCCTGCTGCCCACCATCGTGTACTACTCCGCTTTCTTTGAGGCACACTGGACACGTTCTGGGGAGAACAGAACCACTATGCACAAGTGCTACACCTTCCTCATCTTTATGGTCCTGCTACTGCCATCTCTGGGCCTCAGCAGtttggatttgttttttcgCTGGCTTTTTGACAAGAAGTTCCTGGCTCACGCTACAGTGAGATTCGAaTGTGTATTTCTTCCAGATAATGGGGCTTTCTTTGTTAACTACGTCATTGCCTCGGCCTTCATTGGTAATGCCATGGACCTATTGCGCATTCCGGGTCTGCTCATGTACATGATTCGTCTGTGCTTGGCTCGCTCTGCAGCCGAGAGACGCAACGTAAAGAAGCATCAAGCGTACGAGTTCCAGTTCGGGGCAGCGTACGCCTGGTTGATGAACGTCTTCACTGTAGTCATGACCTACAGCATCAGCTGTCCGATCATCGTTCCTTTCGGTTTAATGTACATGTTATTAAAGCACCTGGTGGACAGGTATAATATGTACTACGCCTACCTGCCTTCCAAACTGGATAAGAAGATCCACTCTGGAGCTGTGAACCAGGTGGTGGCTGCACCCATCCTGTGCCTCTTCTGGTTGCTCTTCTTCTCCACTGTACGCACAGGGTTCCTTGCTGCCACCTCAATGTTCACGTTTGTGGTTCTGATCATCACCATCATAGTTTGCGTCTCTCATGTTGTGTTCGGGCATTTTAAGTACCTAAGCGCACACAATTACACGATTGACTCACAGGACACGGATGGAGTAGAGAATGGACAGCCCCGCACCTCCCCGCCTACCAAATCTGCGCAGAAGTACATCGCACAGGTTCTGCAGGAGCAGGGCCCAGAGGAGTCAGGCTCCGGGAGTGGTGAGGAGTATGGCCAGGGTTCCTCGCAGGATGATGAGCTCATCGTACCGGGCTCTGCTGTCAACGAGGGAGATTTCCAGTCAGGAGAGGACAGTCTCATTGACAACGAGGTGCACCAGTGAGGCACACTACATTCAGTAAATAGAGCTAAACAGACTATAATTAGATCAAAAgcaaacacactgtactgagaTCGGATAAAGCTGTGCTCCAGGACCCTTGCGCCTGTCCGGACCAGGGGGTCACACTTGGATACGTTCCTTCCTTTGGGCTTGGAGGGCAACTAGCAAACACTAACAAGGCTTGACCATTTCCTTTCTTACTTGACGTGGAAAATGCCACTTGTGCTATTACACACTAACTTAAATCTAATCAAGTTCACTGAGGCACTCATGCTGCTTCATGATAGCTTGTTCACATCATGTACGACTGGCTCTCGATCACCTGCATCACCTTTAGAGGGAGAAAACTGTAGTGGGTGCAAATCTGTTCCTTGAGCATTTTCgataatgtttttttggttttgctttggGAGAAATCCTTTTGATCATGgtatttatgcattatgcacCTATTTTGTGTTACGAGTTTTTAATCAGTAGGTTCGTGGGTTCAGAAATGTAAACTGTTCTCTAAAGGTGAGTATTTACTTGGATACACTCCAACTTGCTATCTTTGGAAATgcagggttgtttttttttttttttttctcctccat

Function

GO: NA

KEGG:

id description
K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62392 lncRNA downstream 155528 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA downstream 159641 25915462 ~ 25916951 (-) True G52792
TU62388 lncRNA downstream 210505 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 229700 25843285 ~ 25846892 (-) True G52759
TU62375 lncRNA downstream 230479 25843012 ~ 25846113 (-) False G52759
TU62635 lncRNA upstream 6479 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 139946 26250355 ~ 26286280 (-) True G53047
TU62704 lncRNA upstream 142936 26253345 ~ 26288933 (-) True G53046
TU62709 lncRNA upstream 148021 26258430 ~ 26262823 (-) True G53049
TU62708 lncRNA upstream 163507 26273916 ~ 26276092 (-) True G53048
XM_026939067.2 mRNA downstream 2838 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA downstream 4603 26066974 ~ 26071989 (-) False LOC113541884
XM_026939523.2 mRNA downstream 64812 26003139 ~ 26011780 (-) True LOC113542170
XM_026939525.2 mRNA downstream 70498 26001430 ~ 26006094 (-) False LOC113542170
XM_026939524.2 mRNA downstream 72283 26001430 ~ 26004309 (-) False LOC113542170
XM_034302699.1 mRNA upstream 239720 26350129 ~ 26351151 (-) True LOC117596837
XM_026939275.2 mRNA upstream 255769 26366178 ~ 26467381 (-) True wdr11
XM_026939066.2 mRNA upstream 418597 26529006 ~ 26620986 (-) True plpp4
XM_026939462.1 mRNA upstream 518841 26629250 ~ 26629878 (-) True lhb
XM_026939344.2 mRNA upstream 529140 26639549 ~ 26667669 (-) True arfgef3
XR_003404274.1 other downstream 166473 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1340705 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1424745 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1424745 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2036492 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1427367 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2322811 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3091523 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3569002 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 4001422 30111831 ~ 30122655 (-) True G55209

Expression Profile