RNA id: XM_034302954.1


Basic Information

Item Value
RNA id XM_034302954.1
length 4037
RNA type mRNA
GC content 0.44
exon number 23
gene id LOC117596878
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6643933 ~ 6659991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTAGAGTGAAAGAGAGCAGACTGGTGATGAGAGAGAGCTTCATTCACACAGCAGCGTCTCTGCAGCATCATCATGTTGTTCTGCTGGGGAGCTTCATCCCGAGGACAGCTCGCTTTTCCCGGCACTGGAGGGAAAGACATCGCCACACCGACTTCAGTAAACTTTAATGAACAACTCGTTCAGATATCTTGTGGAGAGCAGCACACTTTATTCCTGACAGGAAGCGGTCAGGTGCTGTCCTGTGGCCGAAACTCTAAAGGACAGCTGGGACGATCCAAGAGCAGAGACACCAAACTgccagTGAAGATTGAAGGATTGGGAGCTGTAGCTGCAATAGCATGTGGACAGGACCACAGTTTGGCTCTGTGTGATTCAGGTCAAGTGTTTTCCTGGGGAGCGGGTGGAGAAGGTCAGCTGGGCCACAGCAGCCCGGTGGCAAAATGTCCCAAACCAGTGCCAGTTCAGATAAAATTACCCTTCCAGATCCCAGTAGTGCAGGTGGCTTGTGGAGATTTCCATTCTTTGGCCCTAACCAAGGGAGGTGAAGTCTTTTCATGGGGTCAGAATAAATATGGGCAGCTGGGACTGGGGAAATCAGTGGACCTGCAGCCTGAACCTGCTCTGGTCCGATTTCTTGTCGGAGTTCCAGTCATTCAGATCTCTGCTGGTGGAGCTCACACCCTGGCCCTGGCTCTCTCAGCTCAAGTGTTCTGCTGTGGAGCTAACAGTGTTGGACAGCTGGGCCTTAAAAGGACTGATGTAAAAGGCCGATTTGCAGTATGTGCAGTTCCAGCTTTGAGGAACTTGGGGGTTTCTTCCATCAGCTGTGGAGCAGCTCACACTGCTGTCCTTACTAAGGCTGGAGAGGTGTACACATTCGGAGAGGGAGCTGATGGTCAACTTGGGCACAACTCCACCAATAACGAGCTTCTACCCCGGAAAGTTGAAGGCATTGATGGACCTGCTAAACAAGTAACCTGTGGCAGCCACCACACTCTGGTTCTGATGCCGTCTGGTGTCCTCTTCACATTTGGCCGTGACGTCCACGTTCAGGCGAGTGGTGGCACTGAGAACAGCCTGCAGCCGGTAAGACTGGAAGGAGACTGGAGCAACTCAGGAGCAGGGatacacacagAAATGAAGATATCATCTGGCTGGAGTTCcaactttcttttctttccaccTTCCAAGaCCAATATTCTTGGAGAGCCAATTGGAAAACTTAAAAAGGCCCAAGTGCAGAGATGGGTTACAATGTTGGAGAGTGATAAAAGCATCAAAGAAATCAAAAGGGAGATTTCCTTGACTTTTGCTACAAGTTCAAATCTCGTCGCCTGCTTCATTAAGGACAGTAGAAATACTCCAGGTACTATTCAGGTTGATTTGAATGCTGCTAGCCAGACCTTTGACCAGCTCCTGAAGATTGCTTGGATCAAGAATTCAATAAACATCACACATGTTGTGCACATTGTTTTTTATGCTGCTCCGGTGATGAGGTGTCCTGAAATCTTCCTGCTTCTGCCCACATGCTCCATTCTTCACGAACAACACAATGTCATTGAACTGGTGCTGCCGTTAGCTGTAGCCATCACAAAACTCCATGAGACTGCCATGAAAAGCTTGAAGGAGTACTTGTCCTCCATGGATGCCAGCATTATGACCAAGCACATCTGTATGTGGAAACAAGCACTTGCCTTCCTCTTGAAGTCCAATGTGTGGTTAAACTATAACCCTGGTGTGAAAGCAGTGCTGGAAGTCCTCAAGTTACTTTACAGGGGAAACAAAAGAGCTGAAAGATCGAGGCAGGTTGCGCTCACTGAGTTCTACATAGAGGAGATAGGCACCTCGCCTCAGTTACTTCAACGGGACGTCACGCTGTGGAGGCAGATTAAATGGGGAGAAGTTCTGGAAGTGGAACATACACCTGCTATCTTCTGTCGTTACCCATTTCTTTTGGATCTGAAGAGCAAAATCATCATTTTAAACTATGTTGCATCCATAACACAGATGGTTCATCAGTTCATCCACGATGATGTGGCAGCTGGAGGGATGTTTCAGGAGGCATATAAATGGGAGGTCCCGACACCCATTCTCCAGCTGAAACTGAGACGCACTGCCTTGCTCGAGGACACATTCAGACAACTTGACAATGCCGACCATGACAACTTCAAAAAAACATTAGTGGTGCAGTTTGTAGAAGACTCCAAACTGACTGAAGTGAACAAAAGGGATTTCTTCCTCCATGCTTTTGATGAGCTTTTGGCTCCTGAATCAAGGATGTTCATGAGAAATGACAGCAAAACAATGATCTGGTTCCCTGCCAAGCCAGCACATGACTCAAAGCGGTACTTCCTGTTTGGGATCCTCTGCGGCCTGGCCCTCTACAATAACAACATAGTGCATATGCCCTTTCCTCTGGCCTTGTTTAAGAAACTGGTCAGTGTAAAGCCCACTCTGGAGGATATGAATGAGTTCAGGCCACAAGTTGGCAAGAGTTTGCAATACCTTTTACATGACTACAAAGATGACGATGCTGAGAACATGGACATCACTTTCCGTGTGCACTGGGATGGTGCAGATGTGGAGCTGGATTCTCACGAAAGAGAAAAACCTGTGACAAGTGCTAACAAGAAGGAGTTTGTGGCGGCATATGTGGATTACGCACTGAACAAGTCAGTGGAGCAGGTGTTTAATGAGTTTAAGAGGGGATTCTACAAAGTGTGTGATGAAGATGTGGTGAACTTCTTCCAGCCGGAGGAGCTCAGAGGAGTGATGGTGGGCACAGAGGAATACGACTGGGACACTTTCAGACAGaatacagtatatactgggCAGTACCACGTGAGACACCCCTCTATCATTGCTTTCTGGGAGGTATTTGAGGAGCTGACGGAGAAGCAAAAGAAAGCCTTTCTCTtgtttctgacAGGCTGTGATCGTGTACCCATCCTTGGGATGGACCAGGTTAGGATGACTGTGTTGGACCGTCCTAACTTCACCCAGGACCACCTCCCGGAGTCCCTCACCTGCCACTCTTATTTCATGCTCCCTCCATATGAGAACAAGCAGCGTCTGGAGGCAAAGCTTATTGAAGCAATAGACCACAACCAAGGCTTTTGGATAGAAAATCCAACAAGTGAATCTTTGAATTGATCTTTGAATATTAAGGTCATGCATTGTTCTAAATCTTATGTACCGCTATAacatatatatcattttttgcTTAACAGTCTGCTTGTTATATTAGATTGCTAATCAGACCTGATTTACTAAAATTTCAAATAACGAGCACTAGTTTTCTTGTTGCGGGTGAATTACAAAGAATATTTGCGTGAATTATGTCATTTACAAAGTAGGGTCAGGAAACACTATGTCAGTTAGGTTCTTGCATGTACCATTTGTTCTTATTAGCAGCAGTGAATACAAAACTGAAATTGGCCACACAGGCATAATTGCTTGTCCATTATGACACTGATTAAAGACAATGATACGCATCGAAAAAGCTACAGAATACAACAGAACATAAAAGTATGTTCTGTTCATGAGGTAAAATGTGAATGGAAATCTTTTCACAGGCTTTATTCAAATGTTGTAAGCATCAGAAAGGaagctttctgattatttttggaTTCTAAGGCATAATCTTGAAAAACCTAGTAATTATAAAAACCTAGTGAATAGTATAATTTAACATTCAAATGCCAGAACCAGGCTTCCACAGATATAATACTAATTTGTACATGCAGTCACTATTTCTGAAGTCTGGCTTTCAGGCTGCATTACAGTAAATCAAATTGTGGGTGCAAAACTAATCTCTTTATATTAATATCGCCATGTATTATCCAAGTTTAGGTAGAATTGCACAACATAGCAATTTCATTAATATACATATTACTTATTAACTCCTTTCACTCTGAACAAATACTAACTGATCAAATTCTGTGTAACCAAAGGTTTATTATATCTATACTAAGGTTTACTTCTTGCAACAGCTACTGCAgctgaataaaaaagtaaacacactGTGTCACTAA

Function

GO: NA

KEGG:

id description
K22372 HERC5_6; E3 ISG15--protein ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49367 lncRNA downstream 105383 6535704 ~ 6538550 (-) True G41731
TU49177 lncRNA downstream 272067 6371655 ~ 6371866 (-) True G41563
TU49084 lncRNA downstream 341845 6295232 ~ 6302088 (-) True G41491
TU48873 lncRNA downstream 767542 5876101 ~ 5876391 (-) True G41300
TU48715 lncRNA downstream 1042790 5599984 ~ 5601143 (-) True G41174
TU49415 lncRNA upstream 17139 6677130 ~ 6680273 (-) True G41768
TU49467 lncRNA upstream 134588 6794579 ~ 6797620 (-) True G41809
TU49606 lncRNA upstream 281249 6941240 ~ 6941458 (-) True G41938
TU49614 lncRNA upstream 352102 7012093 ~ 7012306 (-) True G41944
TU49679 lncRNA upstream 356774 7016765 ~ 7017405 (-) True G42008
XM_034302956.1 mRNA downstream 2311 6623469 ~ 6641622 (-) True LOC113541261
XM_026939514.2 mRNA downstream 23051 6604574 ~ 6620882 (-) True herc5.1
XM_026939506.2 mRNA downstream 41789 6584785 ~ 6602144 (-) True LOC113542150
XM_026939495.2 mRNA downstream 60798 6566261 ~ 6583135 (-) False herc3
XM_026939478.2 mRNA downstream 60805 6550076 ~ 6583128 (-) True herc3
XM_026932741.2 mRNA upstream 40333 6700324 ~ 6716263 (-) True pkd2
XM_034302018.1 mRNA upstream 40333 6700324 ~ 6716262 (-) False pkd2
XM_026932732.2 mRNA upstream 40333 6700324 ~ 6715675 (-) False pkd2
XM_026938824.2 mRNA upstream 164918 6824909 ~ 6844491 (-) True aimp1a
XM_026938831.2 mRNA upstream 164918 6824909 ~ 6844103 (-) False aimp1a
XR_004577821.1 other downstream 824420 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 1416010 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 1416010 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 2034483 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 3609380 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577908.1 other upstream 501483 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 501483 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 1806993 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1808045 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1809080 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile